HEADER TRANSFERASE/TRANSFERASE INHIBITOR 14-OCT-10 3APD TITLE CRYSTAL STRUCTURE OF HUMAN PI3K-GAMMA IN COMPLEX WITH CH5108134 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE CATALYTIC COMPND 3 SUBUNIT GAMMA ISOFORM; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 144-1102; COMPND 6 SYNONYM: PI3-KINASE SUBUNIT GAMMA, PI3K-GAMMA, PTDINS-3-KINASE COMPND 7 SUBUNIT GAMMA, PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE 110 KDA COMPND 8 CATALYTIC SUBUNIT GAMMA, PTDINS-3-KINASE SUBUNIT P110-GAMMA, P120- COMPND 9 PI3K; COMPND 10 EC: 2.7.1.153; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIK3CG; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS PHOSPHOINOSITIDE 3-KINASE GAMMA, KINASE, TRANSFERASE, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.NAKAMURA,T.A.FUKAMI,T.MIYAZAKI,M.YOSHIDA REVDAT 1 13-APR-11 3APD 0 JRNL AUTH J.OHWADA,H.EBIIKE,H.KAWADA,M.TSUKAZAKI,M.NAKAMURA, JRNL AUTH 2 T.MIYAZAKI,K.MORIKAMI,K.YOSHINARI,M.YOSHIDA,O.KONDOH, JRNL AUTH 3 S.KURAMOTO,K.OGAWA,Y.AOKI,N.SHIMMA JRNL TITL DISCOVERY AND BIOLOGICAL ACTIVITY OF A NOVEL CLASS I PI3K JRNL TITL 2 INHIBITOR, CH5132799 JRNL REF BIOORG.MED.CHEM.LETT. V. 21 1767 2011 JRNL REFN ISSN 0960-894X JRNL PMID 21316229 JRNL DOI 10.1016/J.BMCL.2011.01.065 REMARK 2 REMARK 2 RESOLUTION. 2.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 60.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33084 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.253 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.316 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1675 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2308 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.3850 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.4930 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6562 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.88000 REMARK 3 B22 (A**2) : 2.60000 REMARK 3 B33 (A**2) : -1.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.20000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.376 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.327 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.822 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6743 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4449 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9163 ; 1.080 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10837 ; 0.801 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 830 ; 6.210 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 298 ;36.638 ;24.262 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1113 ;16.247 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;13.451 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1048 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7452 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1349 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4182 ; 1.740 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1681 ; 0.355 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6729 ; 3.074 ; 3.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2561 ; 4.191 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2434 ; 6.181 ; 6.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 3APD COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-10. REMARK 100 THE RCSB ID CODE IS RCSB029532. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33084 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.548 REMARK 200 RESOLUTION RANGE LOW (A) : 60.953 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : 0.04600 REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.76 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1E8Y REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M (NH4)2SO4, 0.1M TRIS REMARK 280 -HCL, STREAK SEEDING, PH 7.2, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.47500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.73000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.47500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 33.73000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 137 REMARK 465 PRO A 138 REMARK 465 LEU A 139 REMARK 465 HIS A 140 REMARK 465 MET A 141 REMARK 465 GLY A 142 REMARK 465 SER A 143 REMARK 465 LYS A 254 REMARK 465 LYS A 255 REMARK 465 LYS A 256 REMARK 465 SER A 257 REMARK 465 LEU A 258 REMARK 465 MET A 259 REMARK 465 ASP A 260 REMARK 465 ILE A 261 REMARK 465 PRO A 262 REMARK 465 GLU A 263 REMARK 465 SER A 264 REMARK 465 GLN A 265 REMARK 465 GLU A 322 REMARK 465 TRP A 323 REMARK 465 PRO A 324 REMARK 465 LEU A 325 REMARK 465 VAL A 326 REMARK 465 ASP A 327 REMARK 465 ASP A 328 REMARK 465 CYS A 329 REMARK 465 THR A 330 REMARK 465 GLY A 331 REMARK 465 VAL A 332 REMARK 465 THR A 333 REMARK 465 GLY A 334 REMARK 465 TYR A 335 REMARK 465 HIS A 336 REMARK 465 GLU A 337 REMARK 465 GLN A 338 REMARK 465 LEU A 339 REMARK 465 THR A 340 REMARK 465 ILE A 341 REMARK 465 HIS A 342 REMARK 465 GLY A 343 REMARK 465 LYS A 344 REMARK 465 ASP A 345 REMARK 465 HIS A 346 REMARK 465 GLU A 347 REMARK 465 SER A 348 REMARK 465 VAL A 349 REMARK 465 PHE A 350 REMARK 465 THR A 351 REMARK 465 VAL A 352 REMARK 465 SER A 353 REMARK 465 LEU A 354 REMARK 465 TRP A 355 REMARK 465 ASP A 356 REMARK 465 ARG A 375 REMARK 465 ASN A 376 REMARK 465 GLY A 436 REMARK 465 LYS A 437 REMARK 465 ALA A 438 REMARK 465 PRO A 439 REMARK 465 ALA A 440 REMARK 465 LEU A 441 REMARK 465 SER A 442 REMARK 465 SER A 443 REMARK 465 LYS A 444 REMARK 465 ALA A 445 REMARK 465 SER A 446 REMARK 465 ALA A 447 REMARK 465 GLU A 448 REMARK 465 SER A 449 REMARK 465 PRO A 450 REMARK 465 SER A 451 REMARK 465 SER A 452 REMARK 465 GLU A 453 REMARK 465 SER A 454 REMARK 465 LYS A 455 REMARK 465 GLY A 456 REMARK 465 LYS A 457 REMARK 465 LYS A 490 REMARK 465 GLY A 491 REMARK 465 GLU A 492 REMARK 465 ASP A 493 REMARK 465 GLN A 494 REMARK 465 GLY A 495 REMARK 465 SER A 496 REMARK 465 TYR A 523 REMARK 465 CYS A 524 REMARK 465 HIS A 525 REMARK 465 PRO A 526 REMARK 465 ILE A 527 REMARK 465 ALA A 528 REMARK 465 LEU A 529 REMARK 465 PRO A 530 REMARK 465 LYS A 531 REMARK 465 HIS A 532 REMARK 465 GLN A 533 REMARK 465 PRO A 534 REMARK 465 THR A 535 REMARK 465 PRO A 536 REMARK 465 ASP A 537 REMARK 465 PRO A 538 REMARK 465 GLU A 539 REMARK 465 GLY A 540 REMARK 465 ASP A 541 REMARK 465 ARG A 542 REMARK 465 VAL A 543 REMARK 465 ARG A 544 REMARK 465 ALA A 545 REMARK 465 GLU A 755 REMARK 465 LYS A 756 REMARK 465 TYR A 757 REMARK 465 TYR A 972 REMARK 465 LYS A 973 REMARK 465 SER A 974 REMARK 465 PHE A 975 REMARK 465 LEU A 976 REMARK 465 GLY A 977 REMARK 465 ILE A 978 REMARK 465 ILE A 1094 REMARK 465 LYS A 1095 REMARK 465 GLN A 1096 REMARK 465 GLY A 1097 REMARK 465 GLU A 1098 REMARK 465 LYS A 1099 REMARK 465 HIS A 1100 REMARK 465 SER A 1101 REMARK 465 ALA A 1102 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 145 CG CD OE1 OE2 REMARK 470 GLN A 148 CG CD OE1 NE2 REMARK 470 ARG A 152 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 153 CG CD OE1 NE2 REMARK 470 LYS A 194 CG CD CE NZ REMARK 470 LYS A 205 CD CE NZ REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 LYS A 213 CD CE NZ REMARK 470 GLN A 231 CG CD OE1 NE2 REMARK 470 PHE A 249 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 250 OG1 CG2 REMARK 470 LYS A 251 CG CD CE NZ REMARK 470 MET A 252 CG SD CE REMARK 470 GLU A 267 CG CD OE1 OE2 REMARK 470 LYS A 298 CD CE NZ REMARK 470 LEU A 307 CG CD1 CD2 REMARK 470 LYS A 320 CG CD CE NZ REMARK 470 ARG A 359 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 362 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 364 CG CD CE NZ REMARK 470 LEU A 373 CG CD1 CD2 REMARK 470 THR A 377 OG1 CG2 REMARK 470 ASP A 378 CG OD1 OD2 REMARK 470 LEU A 379 CG CD1 CD2 REMARK 470 GLN A 392 CG CD OE1 NE2 REMARK 470 ARG A 398 CD NE CZ NH1 NH2 REMARK 470 GLU A 406 CG CD OE1 OE2 REMARK 470 LYS A 421 CG CD CE NZ REMARK 470 ARG A 477 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 550 CG CD OE1 NE2 REMARK 470 GLU A 570 CG CD OE1 OE2 REMARK 470 GLU A 638 CG CD OE1 OE2 REMARK 470 LYS A 744 CG CD CE NZ REMARK 470 GLN A 762 CG CD OE1 NE2 REMARK 470 GLN A 766 CG CD OE1 NE2 REMARK 470 LYS A 768 CG CD CE NZ REMARK 470 LYS A 770 CG CD CE NZ REMARK 470 LEU A 771 CG CD1 CD2 REMARK 470 LEU A 774 CG CD1 CD2 REMARK 470 LYS A 792 CD CE NZ REMARK 470 LYS A 807 CD CE NZ REMARK 470 LYS A 816 CG CD CE NZ REMARK 470 LYS A 875 CE NZ REMARK 470 LYS A 883 CD CE NZ REMARK 470 LYS A 912 CG CD CE NZ REMARK 470 GLU A 913 CG CD OE1 OE2 REMARK 470 GLU A 918 CG CD OE1 OE2 REMARK 470 GLU A 919 CG CD OE1 OE2 REMARK 470 ASN A 979 CG OD1 REMARK 470 LYS A1000 CD CE NZ REMARK 470 LYS A1001 CE NZ REMARK 470 GLN A1010 CG CD OE1 NE2 REMARK 470 GLN A1041 CG CD OE1 NE2 REMARK 470 LEU A1042 CG CD1 CD2 REMARK 470 THR A1043 OG1 CG2 REMARK 470 LYS A1045 CG CD CE NZ REMARK 470 GLU A1046 CG CD OE1 OE2 REMARK 470 LYS A1059 CD CE NZ REMARK 470 LYS A1066 CG CD CE NZ REMARK 470 VAL A1082 CG1 CG2 REMARK 470 LEU A1090 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 430 OD1 ASN A 465 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 164 91.82 -60.47 REMARK 500 ASN A 218 46.62 35.28 REMARK 500 ARG A 226 -71.63 -163.98 REMARK 500 THR A 228 -32.48 89.50 REMARK 500 THR A 229 84.37 -61.10 REMARK 500 PHE A 249 -71.19 -73.65 REMARK 500 LYS A 251 -77.58 -104.48 REMARK 500 MET A 252 81.98 -68.22 REMARK 500 LEU A 281 75.15 -100.71 REMARK 500 ILE A 287 -34.27 -36.57 REMARK 500 ASP A 378 -175.83 -66.15 REMARK 500 ASN A 411 8.45 54.67 REMARK 500 HIS A 471 -4.31 -57.81 REMARK 500 ASN A 498 126.84 167.51 REMARK 500 ASP A 509 87.45 -66.90 REMARK 500 PHE A 578 54.55 -94.31 REMARK 500 LYS A 587 -16.27 -41.09 REMARK 500 ARG A 613 55.02 -114.97 REMARK 500 SER A 620 150.87 -49.46 REMARK 500 ASP A 788 74.15 -154.04 REMARK 500 ALA A 805 54.48 -94.27 REMARK 500 LEU A 823 45.39 -77.71 REMARK 500 LEU A 865 75.50 -114.56 REMARK 500 ASP A 884 72.41 51.59 REMARK 500 ASP A 964 85.72 57.77 REMARK 500 LYS A1001 -163.78 -69.69 REMARK 500 GLN A1041 36.98 96.60 REMARK 500 LEU A1042 36.85 -99.31 REMARK 500 THR A1056 66.18 36.21 REMARK 500 VAL A1091 -44.23 -131.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 521 ASN A 522 149.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MMY A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3APC RELATED DB: PDB REMARK 900 RELATED ID: 3APF RELATED DB: PDB DBREF 3APD A 144 1102 UNP P48736 PK3CG_HUMAN 144 1102 SEQADV 3APD GLY A 137 UNP P48736 EXPRESSION TAG SEQADV 3APD PRO A 138 UNP P48736 EXPRESSION TAG SEQADV 3APD LEU A 139 UNP P48736 EXPRESSION TAG SEQADV 3APD HIS A 140 UNP P48736 EXPRESSION TAG SEQADV 3APD MET A 141 UNP P48736 EXPRESSION TAG SEQADV 3APD GLY A 142 UNP P48736 EXPRESSION TAG SEQADV 3APD SER A 143 UNP P48736 EXPRESSION TAG SEQRES 1 A 966 GLY PRO LEU HIS MET GLY SER SER GLU GLU SER GLN ALA SEQRES 2 A 966 PHE GLN ARG GLN LEU THR ALA LEU ILE GLY TYR ASP VAL SEQRES 3 A 966 THR ASP VAL SER ASN VAL HIS ASP ASP GLU LEU GLU PHE SEQRES 4 A 966 THR ARG ARG GLY LEU VAL THR PRO ARG MET ALA GLU VAL SEQRES 5 A 966 ALA SER ARG ASP PRO LYS LEU TYR ALA MET HIS PRO TRP SEQRES 6 A 966 VAL THR SER LYS PRO LEU PRO GLU TYR LEU TRP LYS LYS SEQRES 7 A 966 ILE ALA ASN ASN CYS ILE PHE ILE VAL ILE HIS ARG SER SEQRES 8 A 966 THR THR SER GLN THR ILE LYS VAL SER PRO ASP ASP THR SEQRES 9 A 966 PRO GLY ALA ILE LEU GLN SER PHE PHE THR LYS MET ALA SEQRES 10 A 966 LYS LYS LYS SER LEU MET ASP ILE PRO GLU SER GLN SER SEQRES 11 A 966 GLU GLN ASP PHE VAL LEU ARG VAL CYS GLY ARG ASP GLU SEQRES 12 A 966 TYR LEU VAL GLY GLU THR PRO ILE LYS ASN PHE GLN TRP SEQRES 13 A 966 VAL ARG HIS CYS LEU LYS ASN GLY GLU GLU ILE HIS VAL SEQRES 14 A 966 VAL LEU ASP THR PRO PRO ASP PRO ALA LEU ASP GLU VAL SEQRES 15 A 966 ARG LYS GLU GLU TRP PRO LEU VAL ASP ASP CYS THR GLY SEQRES 16 A 966 VAL THR GLY TYR HIS GLU GLN LEU THR ILE HIS GLY LYS SEQRES 17 A 966 ASP HIS GLU SER VAL PHE THR VAL SER LEU TRP ASP CYS SEQRES 18 A 966 ASP ARG LYS PHE ARG VAL LYS ILE ARG GLY ILE ASP ILE SEQRES 19 A 966 PRO VAL LEU PRO ARG ASN THR ASP LEU THR VAL PHE VAL SEQRES 20 A 966 GLU ALA ASN ILE GLN HIS GLY GLN GLN VAL LEU CYS GLN SEQRES 21 A 966 ARG ARG THR SER PRO LYS PRO PHE THR GLU GLU VAL LEU SEQRES 22 A 966 TRP ASN VAL TRP LEU GLU PHE SER ILE LYS ILE LYS ASP SEQRES 23 A 966 LEU PRO LYS GLY ALA LEU LEU ASN LEU GLN ILE TYR CYS SEQRES 24 A 966 GLY LYS ALA PRO ALA LEU SER SER LYS ALA SER ALA GLU SEQRES 25 A 966 SER PRO SER SER GLU SER LYS GLY LYS VAL GLN LEU LEU SEQRES 26 A 966 TYR TYR VAL ASN LEU LEU LEU ILE ASP HIS ARG PHE LEU SEQRES 27 A 966 LEU ARG ARG GLY GLU TYR VAL LEU HIS MET TRP GLN ILE SEQRES 28 A 966 SER GLY LYS GLY GLU ASP GLN GLY SER PHE ASN ALA ASP SEQRES 29 A 966 LYS LEU THR SER ALA THR ASN PRO ASP LYS GLU ASN SER SEQRES 30 A 966 MET SER ILE SER ILE LEU LEU ASP ASN TYR CYS HIS PRO SEQRES 31 A 966 ILE ALA LEU PRO LYS HIS GLN PRO THR PRO ASP PRO GLU SEQRES 32 A 966 GLY ASP ARG VAL ARG ALA GLU MET PRO ASN GLN LEU ARG SEQRES 33 A 966 LYS GLN LEU GLU ALA ILE ILE ALA THR ASP PRO LEU ASN SEQRES 34 A 966 PRO LEU THR ALA GLU ASP LYS GLU LEU LEU TRP HIS PHE SEQRES 35 A 966 ARG TYR GLU SER LEU LYS HIS PRO LYS ALA TYR PRO LYS SEQRES 36 A 966 LEU PHE SER SER VAL LYS TRP GLY GLN GLN GLU ILE VAL SEQRES 37 A 966 ALA LYS THR TYR GLN LEU LEU ALA ARG ARG GLU VAL TRP SEQRES 38 A 966 ASP GLN SER ALA LEU ASP VAL GLY LEU THR MET GLN LEU SEQRES 39 A 966 LEU ASP CYS ASN PHE SER ASP GLU ASN VAL ARG ALA ILE SEQRES 40 A 966 ALA VAL GLN LYS LEU GLU SER LEU GLU ASP ASP ASP VAL SEQRES 41 A 966 LEU HIS TYR LEU LEU GLN LEU VAL GLN ALA VAL LYS PHE SEQRES 42 A 966 GLU PRO TYR HIS ASP SER ALA LEU ALA ARG PHE LEU LEU SEQRES 43 A 966 LYS ARG GLY LEU ARG ASN LYS ARG ILE GLY HIS PHE LEU SEQRES 44 A 966 PHE TRP PHE LEU ARG SER GLU ILE ALA GLN SER ARG HIS SEQRES 45 A 966 TYR GLN GLN ARG PHE ALA VAL ILE LEU GLU ALA TYR LEU SEQRES 46 A 966 ARG GLY CYS GLY THR ALA MET LEU HIS ASP PHE THR GLN SEQRES 47 A 966 GLN VAL GLN VAL ILE GLU MET LEU GLN LYS VAL THR LEU SEQRES 48 A 966 ASP ILE LYS SER LEU SER ALA GLU LYS TYR ASP VAL SER SEQRES 49 A 966 SER GLN VAL ILE SER GLN LEU LYS GLN LYS LEU GLU ASN SEQRES 50 A 966 LEU GLN ASN SER GLN LEU PRO GLU SER PHE ARG VAL PRO SEQRES 51 A 966 TYR ASP PRO GLY LEU LYS ALA GLY ALA LEU ALA ILE GLU SEQRES 52 A 966 LYS CYS LYS VAL MET ALA SER LYS LYS LYS PRO LEU TRP SEQRES 53 A 966 LEU GLU PHE LYS CYS ALA ASP PRO THR ALA LEU SER ASN SEQRES 54 A 966 GLU THR ILE GLY ILE ILE PHE LYS HIS GLY ASP ASP LEU SEQRES 55 A 966 ARG GLN ASP MET LEU ILE LEU GLN ILE LEU ARG ILE MET SEQRES 56 A 966 GLU SER ILE TRP GLU THR GLU SER LEU ASP LEU CYS LEU SEQRES 57 A 966 LEU PRO TYR GLY CYS ILE SER THR GLY ASP LYS ILE GLY SEQRES 58 A 966 MET ILE GLU ILE VAL LYS ASP ALA THR THR ILE ALA LYS SEQRES 59 A 966 ILE GLN GLN SER THR VAL GLY ASN THR GLY ALA PHE LYS SEQRES 60 A 966 ASP GLU VAL LEU ASN HIS TRP LEU LYS GLU LYS SER PRO SEQRES 61 A 966 THR GLU GLU LYS PHE GLN ALA ALA VAL GLU ARG PHE VAL SEQRES 62 A 966 TYR SER CYS ALA GLY TYR CYS VAL ALA THR PHE VAL LEU SEQRES 63 A 966 GLY ILE GLY ASP ARG HIS ASN ASP ASN ILE MET ILE THR SEQRES 64 A 966 GLU THR GLY ASN LEU PHE HIS ILE ASP PHE GLY HIS ILE SEQRES 65 A 966 LEU GLY ASN TYR LYS SER PHE LEU GLY ILE ASN LYS GLU SEQRES 66 A 966 ARG VAL PRO PHE VAL LEU THR PRO ASP PHE LEU PHE VAL SEQRES 67 A 966 MET GLY THR SER GLY LYS LYS THR SER PRO HIS PHE GLN SEQRES 68 A 966 LYS PHE GLN ASP ILE CYS VAL LYS ALA TYR LEU ALA LEU SEQRES 69 A 966 ARG HIS HIS THR ASN LEU LEU ILE ILE LEU PHE SER MET SEQRES 70 A 966 MET LEU MET THR GLY MET PRO GLN LEU THR SER LYS GLU SEQRES 71 A 966 ASP ILE GLU TYR ILE ARG ASP ALA LEU THR VAL GLY LYS SEQRES 72 A 966 ASN GLU GLU ASP ALA LYS LYS TYR PHE LEU ASP GLN ILE SEQRES 73 A 966 GLU VAL CYS ARG ASP LYS GLY TRP THR VAL GLN PHE ASN SEQRES 74 A 966 TRP PHE LEU HIS LEU VAL LEU GLY ILE LYS GLN GLY GLU SEQRES 75 A 966 LYS HIS SER ALA HET MMY A 1 28 HET SO4 A1103 5 HET SO4 A 2 5 HETNAM MMY 5-(2-MORPHOLIN-4-YL-7-PYRIDIN-3-YL-6,7-DIHYDRO-5H- HETNAM 2 MMY PYRROLO[2,3-D]PYRIMIDIN-4-YL)-PYRIMIDIN-2-YLAMINE HETNAM SO4 SULFATE ION FORMUL 2 MMY C19 H20 N8 O FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 HOH *15(H2 O) HELIX 1 1 SER A 144 GLY A 159 1 16 HELIX 2 2 ASP A 171 LEU A 180 1 10 HELIX 3 3 LEU A 180 ARG A 191 1 12 HELIX 4 4 ASP A 192 HIS A 199 1 8 HELIX 5 5 PRO A 208 LYS A 213 1 6 HELIX 6 6 PRO A 241 PHE A 249 1 9 HELIX 7 7 PRO A 286 ASN A 289 5 4 HELIX 8 8 PHE A 290 ASN A 299 1 10 HELIX 9 9 LYS A 421 LEU A 423 5 3 HELIX 10 10 ASN A 498 THR A 503 5 6 HELIX 11 11 PRO A 548 THR A 561 1 14 HELIX 12 12 THR A 568 PHE A 578 1 11 HELIX 13 13 PHE A 578 LEU A 583 1 6 HELIX 14 14 LYS A 584 LYS A 587 5 4 HELIX 15 15 ALA A 588 SER A 594 1 7 HELIX 16 16 GLN A 600 ARG A 613 1 14 HELIX 17 17 ARG A 614 SER A 620 1 7 HELIX 18 18 ASP A 623 LEU A 630 1 8 HELIX 19 19 ASP A 637 SER A 650 1 14 HELIX 20 20 GLU A 652 VAL A 667 1 16 HELIX 21 21 LYS A 668 GLU A 670 5 3 HELIX 22 22 SER A 675 ASN A 688 1 14 HELIX 23 23 ASN A 688 ALA A 704 1 17 HELIX 24 24 TYR A 709 ARG A 722 1 14 HELIX 25 25 GLY A 725 LEU A 752 1 28 HELIX 26 26 SER A 760 SER A 777 1 18 HELIX 27 27 ASP A 837 THR A 857 1 21 HELIX 28 28 ILE A 888 VAL A 896 1 9 HELIX 29 29 GLU A 905 SER A 915 1 11 HELIX 30 30 LYS A 920 GLY A 943 1 24 HELIX 31 31 THR A 988 GLY A 996 1 9 HELIX 32 32 SER A 1003 HIS A 1023 1 21 HELIX 33 33 HIS A 1023 MET A 1039 1 17 HELIX 34 34 LYS A 1045 LEU A 1055 1 11 HELIX 35 35 ASN A 1060 GLY A 1079 1 20 HELIX 36 36 TRP A 1080 LEU A 1090 1 11 SHEET 1 A 4 GLN A 231 VAL A 235 0 SHEET 2 A 4 ILE A 220 HIS A 225 -1 N ILE A 220 O VAL A 235 SHEET 3 A 4 HIS A 304 ASP A 308 1 O VAL A 305 N VAL A 223 SHEET 4 A 4 VAL A 271 VAL A 274 -1 N ARG A 273 O VAL A 306 SHEET 1 B 4 GLU A 407 LYS A 419 0 SHEET 2 B 4 LYS A 360 ASP A 369 -1 N PHE A 361 O PHE A 416 SHEET 3 B 4 SER A 515 LEU A 520 -1 O SER A 517 N GLY A 367 SHEET 4 B 4 GLY A 478 HIS A 483 -1 N LEU A 482 O ILE A 516 SHEET 1 C 3 GLN A 392 ARG A 398 0 SHEET 2 C 3 THR A 380 HIS A 389 -1 N ILE A 387 O CYS A 395 SHEET 3 C 3 LYS A 402 PRO A 403 -1 O LYS A 402 N VAL A 381 SHEET 1 D 4 GLN A 392 ARG A 398 0 SHEET 2 D 4 THR A 380 HIS A 389 -1 N ILE A 387 O CYS A 395 SHEET 3 D 4 LEU A 428 TYR A 434 -1 O GLN A 432 N GLU A 384 SHEET 4 D 4 LEU A 460 LEU A 467 -1 O LEU A 461 N ILE A 433 SHEET 1 E 4 PHE A 783 VAL A 785 0 SHEET 2 E 4 ASP A 788 LEU A 796 -1 O ALA A 793 N PHE A 783 SHEET 3 E 4 LEU A 811 CYS A 817 -1 O LYS A 816 N GLY A 794 SHEET 4 E 4 LYS A 802 VAL A 803 -1 N LYS A 802 O TRP A 812 SHEET 1 F 6 PHE A 783 VAL A 785 0 SHEET 2 F 6 ASP A 788 LEU A 796 -1 O ALA A 793 N PHE A 783 SHEET 3 F 6 LEU A 811 CYS A 817 -1 O LYS A 816 N GLY A 794 SHEET 4 F 6 ILE A 828 HIS A 834 -1 O ILE A 828 N PHE A 815 SHEET 5 F 6 ILE A 876 GLU A 880 -1 O ILE A 879 N ILE A 831 SHEET 6 F 6 CYS A 869 GLY A 873 -1 N ILE A 870 O MET A 878 SHEET 1 G 3 ALA A 885 THR A 887 0 SHEET 2 G 3 ILE A 952 THR A 955 -1 O ILE A 954 N THR A 886 SHEET 3 G 3 LEU A 960 HIS A 962 -1 O PHE A 961 N MET A 953 SITE 1 AC1 11 ILE A 831 LYS A 833 ASP A 836 ILE A 879 SITE 2 AC1 11 GLU A 880 ILE A 881 VAL A 882 THR A 887 SITE 3 AC1 11 MET A 953 ILE A 963 ASP A 964 SITE 1 AC2 4 PRO A 206 LEU A 207 TRP A 212 LYS A 288 SITE 1 AC3 6 ASP A 946 ARG A 947 HIS A 948 ASN A 951 SITE 2 AC3 6 ILE A 968 TRP A1086 CRYST1 142.950 67.460 106.280 90.00 95.68 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006995 0.000000 0.000696 0.00000 SCALE2 0.000000 0.014824 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009456 0.00000 MASTER 518 0 3 36 28 0 6 6 0 0 0 75 END