HEADER OXIDOREDUCTASE 28-FEB-10 3AFF TITLE CRYSTAL STRUCTURE OF THE HSAA MONOOXYGENASE FROM M. TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYDROXYLASE, PUTATIVE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HSAA, POSSIBLE OXIDOREDUCTASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS HSAA, CHOLESTEROL 3HSA MONOOXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR I.D'ANGELO,L.Y.LIN,C.DRESEN,E.I.TOCHEVA,N.STRYNADKA,L.D.ELTIS REVDAT 2 27-APR-11 3AFF 1 JRNL REVDAT 1 26-MAY-10 3AFF 0 JRNL AUTH C.DRESEN,L.Y.LIN,I.D'ANGELO,E.I.TOCHEVA,N.STRYNADKA, JRNL AUTH 2 L.D.ELTIS JRNL TITL A FLAVIN-DEPENDENT MONOOXYGENASE FROM MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS INVOLVED IN CHOLESTEROL CATABOLISM JRNL REF J.BIOL.CHEM. V. 285 22264 2010 JRNL REFN ISSN 0021-9258 JRNL PMID 20448045 JRNL DOI 10.1074/JBC.M109.099028 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.76 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 68987 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3631 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5086 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 267 REMARK 3 BIN FREE R VALUE : 0.2800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5643 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 622 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.64000 REMARK 3 B22 (A**2) : -0.08000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.122 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.548 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5859 ; 0.021 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7994 ; 1.853 ; 1.926 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 744 ; 5.927 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 286 ;33.094 ;22.832 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 867 ;17.101 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 55 ;22.172 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 852 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4639 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3002 ; 0.236 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3994 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 514 ; 0.216 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 79 ; 0.224 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.184 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3753 ; 1.176 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5837 ; 1.788 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2468 ; 2.999 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2148 ; 4.685 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3AFF COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-MAR-10. REMARK 100 THE RCSB ID CODE IS RCSB029185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : MONOCHROMATOR SI111 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72634 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 26.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2JBS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.57000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 87.88500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 89.74500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.57000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 87.88500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 89.74500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 34.57000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 87.88500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 89.74500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 34.57000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 87.88500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 89.74500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 20710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 97130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -122.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 69.14000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 69.14000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 ILE A 4 REMARK 465 GLN A 5 REMARK 465 GLN A 6 REMARK 465 GLY A 261 REMARK 465 LYS A 262 REMARK 465 ARG A 263 REMARK 465 VAL A 264 REMARK 465 ARG A 265 REMARK 465 ALA A 266 REMARK 465 ALA A 267 REMARK 465 PHE A 268 REMARK 465 ALA A 269 REMARK 465 GLY A 270 REMARK 465 GLU A 271 REMARK 465 LYS A 272 REMARK 465 ALA A 273 REMARK 465 LYS A 274 REMARK 465 ASP A 275 REMARK 465 ASP A 276 REMARK 465 PRO A 277 REMARK 465 PHE A 278 REMARK 465 ALA A 279 REMARK 465 LYS A 280 REMARK 465 VAL A 281 REMARK 465 ARG A 282 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 SER B 3 REMARK 465 ILE B 4 REMARK 465 GLN B 5 REMARK 465 GLN B 6 REMARK 465 GLN B 260 REMARK 465 GLY B 261 REMARK 465 LYS B 262 REMARK 465 ARG B 263 REMARK 465 VAL B 264 REMARK 465 ARG B 265 REMARK 465 ALA B 266 REMARK 465 ALA B 267 REMARK 465 PHE B 268 REMARK 465 ALA B 269 REMARK 465 GLY B 270 REMARK 465 GLU B 271 REMARK 465 LYS B 272 REMARK 465 ALA B 273 REMARK 465 LYS B 274 REMARK 465 ASP B 275 REMARK 465 ASP B 276 REMARK 465 PRO B 277 REMARK 465 PHE B 278 REMARK 465 ALA B 279 REMARK 465 LYS B 280 REMARK 465 VAL B 281 REMARK 465 ARG B 282 REMARK 465 ILE B 283 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB THR A 240 O HOH A 679 1.44 REMARK 500 CB THR A 330 O HOH A 593 1.62 REMARK 500 O HOH A 458 O HOH A 583 1.89 REMARK 500 NE ARG A 173 O HOH A 493 1.91 REMARK 500 OD2 ASP B 291 O HOH B 481 2.04 REMARK 500 NH2 ARG A 173 O HOH A 493 2.06 REMARK 500 O HOH B 457 O HOH B 687 2.08 REMARK 500 O HOH B 448 O HOH B 487 2.08 REMARK 500 CG2 THR A 330 O HOH A 593 2.08 REMARK 500 O HOH B 414 O HOH B 443 2.11 REMARK 500 OE1 GLU B 285 O HOH B 443 2.11 REMARK 500 O HOH B 464 O HOH B 636 2.11 REMARK 500 O HOH A 477 O HOH A 565 2.12 REMARK 500 O HOH A 545 O HOH A 661 2.13 REMARK 500 OE2 GLU B 317 O HOH B 527 2.15 REMARK 500 O HIS A 237 CG2 THR A 240 2.16 REMARK 500 O HOH A 505 O HOH A 623 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CG GLU B 317 O HOH A 650 3655 2.18 REMARK 500 O HOH B 553 O HOH B 553 2755 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 206 CZ ARG B 206 NH2 0.085 REMARK 500 GLU B 317 CG GLU B 317 CD 0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 215 CB - CG - OD1 ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 319 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 319 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 321 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 206 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP B 215 CB - CG - OD1 ANGL. DEV. = -7.7 DEGREES REMARK 500 MET B 236 CG - SD - CE ANGL. DEV. = -16.4 DEGREES REMARK 500 ARG B 319 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 319 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG B 321 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 62 50.91 29.00 REMARK 500 GLN B 62 51.11 32.78 REMARK 500 GLU B 258 83.16 -63.04 REMARK 500 ASN B 382 29.36 -140.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 40 24.8 L L OUTSIDE RANGE REMARK 500 VAL A 367 23.5 L L OUTSIDE RANGE REMARK 500 VAL B 367 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 619 DISTANCE = 5.37 ANGSTROMS REMARK 525 HOH A 666 DISTANCE = 5.24 ANGSTROMS REMARK 525 HOH A 670 DISTANCE = 5.72 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3AFE RELATED DB: PDB DBREF 3AFF A 1 394 UNP P96852 P96852_MYCTU 1 394 DBREF 3AFF B 1 394 UNP P96852 P96852_MYCTU 1 394 SEQRES 1 A 394 MET THR SER ILE GLN GLN ARG ASP ALA GLN SER VAL LEU SEQRES 2 A 394 ALA ALA ILE ASP ASN LEU LEU PRO GLU ILE ARG ASP ARG SEQRES 3 A 394 ALA GLN ALA THR GLU ASP LEU ARG ARG LEU PRO ASP GLU SEQRES 4 A 394 THR VAL LYS ALA LEU ASP ASP VAL GLY PHE PHE THR LEU SEQRES 5 A 394 LEU GLN PRO GLN GLN TRP GLY GLY LEU GLN CYS ASP PRO SEQRES 6 A 394 ALA LEU PHE PHE GLU ALA THR ARG ARG LEU ALA SER VAL SEQRES 7 A 394 CYS GLY SER THR GLY TRP VAL SER SER ILE VAL GLY VAL SEQRES 8 A 394 HIS ASN TRP HIS LEU ALA LEU PHE ASP GLN ARG ALA GLN SEQRES 9 A 394 GLU GLU VAL TRP GLY GLU ASP PRO SER THR ARG ILE SER SEQRES 10 A 394 SER SER TYR ALA PRO MET GLY ALA GLY VAL VAL VAL ASP SEQRES 11 A 394 GLY GLY TYR LEU VAL ASN GLY SER TRP ASN TRP SER SER SEQRES 12 A 394 GLY CYS ASP HIS ALA SER TRP THR PHE VAL GLY GLY PRO SEQRES 13 A 394 VAL ILE LYS ASP GLY ARG PRO VAL ASP PHE GLY SER PHE SEQRES 14 A 394 LEU ILE PRO ARG SER GLU TYR GLU ILE LYS ASP VAL TRP SEQRES 15 A 394 TYR VAL VAL GLY LEU ARG GLY THR GLY SER ASN THR LEU SEQRES 16 A 394 VAL VAL LYS ASP VAL PHE VAL PRO ARG HIS ARG PHE LEU SEQRES 17 A 394 SER TYR LYS ALA MET ASN ASP HIS THR ALA GLY GLY LEU SEQRES 18 A 394 ALA THR ASN SER ALA PRO VAL TYR LYS MET PRO TRP GLY SEQRES 19 A 394 THR MET HIS PRO THR THR ILE SER ALA PRO ILE VAL GLY SEQRES 20 A 394 MET ALA TYR GLY ALA TYR ALA ALA HIS VAL GLU HIS GLN SEQRES 21 A 394 GLY LYS ARG VAL ARG ALA ALA PHE ALA GLY GLU LYS ALA SEQRES 22 A 394 LYS ASP ASP PRO PHE ALA LYS VAL ARG ILE ALA GLU ALA SEQRES 23 A 394 ALA SER ASP ILE ASP ALA ALA TRP ARG GLN LEU ILE GLY SEQRES 24 A 394 ASN VAL SER ASP GLU TYR ALA LEU LEU ALA ALA GLY LYS SEQRES 25 A 394 GLU ILE PRO PHE GLU LEU ARG ALA ARG ALA ARG ARG ASP SEQRES 26 A 394 GLN VAL ARG ALA THR GLY ARG SER ILE ALA SER ILE ASP SEQRES 27 A 394 ARG LEU PHE GLU ALA SER GLY ALA THR ALA LEU SER ASN SEQRES 28 A 394 GLU ALA PRO ILE GLN ARG PHE TRP ARG ASP ALA HIS ALA SEQRES 29 A 394 GLY ARG VAL HIS ALA ALA ASN ASP PRO GLU ARG ALA TYR SEQRES 30 A 394 VAL ILE PHE GLY ASN HIS GLU PHE GLY LEU PRO PRO GLY SEQRES 31 A 394 ASP THR MET VAL SEQRES 1 B 394 MET THR SER ILE GLN GLN ARG ASP ALA GLN SER VAL LEU SEQRES 2 B 394 ALA ALA ILE ASP ASN LEU LEU PRO GLU ILE ARG ASP ARG SEQRES 3 B 394 ALA GLN ALA THR GLU ASP LEU ARG ARG LEU PRO ASP GLU SEQRES 4 B 394 THR VAL LYS ALA LEU ASP ASP VAL GLY PHE PHE THR LEU SEQRES 5 B 394 LEU GLN PRO GLN GLN TRP GLY GLY LEU GLN CYS ASP PRO SEQRES 6 B 394 ALA LEU PHE PHE GLU ALA THR ARG ARG LEU ALA SER VAL SEQRES 7 B 394 CYS GLY SER THR GLY TRP VAL SER SER ILE VAL GLY VAL SEQRES 8 B 394 HIS ASN TRP HIS LEU ALA LEU PHE ASP GLN ARG ALA GLN SEQRES 9 B 394 GLU GLU VAL TRP GLY GLU ASP PRO SER THR ARG ILE SER SEQRES 10 B 394 SER SER TYR ALA PRO MET GLY ALA GLY VAL VAL VAL ASP SEQRES 11 B 394 GLY GLY TYR LEU VAL ASN GLY SER TRP ASN TRP SER SER SEQRES 12 B 394 GLY CYS ASP HIS ALA SER TRP THR PHE VAL GLY GLY PRO SEQRES 13 B 394 VAL ILE LYS ASP GLY ARG PRO VAL ASP PHE GLY SER PHE SEQRES 14 B 394 LEU ILE PRO ARG SER GLU TYR GLU ILE LYS ASP VAL TRP SEQRES 15 B 394 TYR VAL VAL GLY LEU ARG GLY THR GLY SER ASN THR LEU SEQRES 16 B 394 VAL VAL LYS ASP VAL PHE VAL PRO ARG HIS ARG PHE LEU SEQRES 17 B 394 SER TYR LYS ALA MET ASN ASP HIS THR ALA GLY GLY LEU SEQRES 18 B 394 ALA THR ASN SER ALA PRO VAL TYR LYS MET PRO TRP GLY SEQRES 19 B 394 THR MET HIS PRO THR THR ILE SER ALA PRO ILE VAL GLY SEQRES 20 B 394 MET ALA TYR GLY ALA TYR ALA ALA HIS VAL GLU HIS GLN SEQRES 21 B 394 GLY LYS ARG VAL ARG ALA ALA PHE ALA GLY GLU LYS ALA SEQRES 22 B 394 LYS ASP ASP PRO PHE ALA LYS VAL ARG ILE ALA GLU ALA SEQRES 23 B 394 ALA SER ASP ILE ASP ALA ALA TRP ARG GLN LEU ILE GLY SEQRES 24 B 394 ASN VAL SER ASP GLU TYR ALA LEU LEU ALA ALA GLY LYS SEQRES 25 B 394 GLU ILE PRO PHE GLU LEU ARG ALA ARG ALA ARG ARG ASP SEQRES 26 B 394 GLN VAL ARG ALA THR GLY ARG SER ILE ALA SER ILE ASP SEQRES 27 B 394 ARG LEU PHE GLU ALA SER GLY ALA THR ALA LEU SER ASN SEQRES 28 B 394 GLU ALA PRO ILE GLN ARG PHE TRP ARG ASP ALA HIS ALA SEQRES 29 B 394 GLY ARG VAL HIS ALA ALA ASN ASP PRO GLU ARG ALA TYR SEQRES 30 B 394 VAL ILE PHE GLY ASN HIS GLU PHE GLY LEU PRO PRO GLY SEQRES 31 B 394 ASP THR MET VAL FORMUL 3 HOH *622(H2 O) HELIX 1 1 ASP A 8 ARG A 34 1 27 HELIX 2 2 PRO A 37 GLY A 48 1 12 HELIX 3 3 PHE A 49 LEU A 52 5 4 HELIX 4 4 PRO A 55 GLY A 59 5 5 HELIX 5 5 ASP A 64 SER A 77 1 14 HELIX 6 6 CYS A 79 ALA A 97 1 19 HELIX 7 7 ASP A 100 GLY A 109 1 10 HELIX 8 8 GLY A 144 ALA A 148 5 5 HELIX 9 9 SER A 174 TYR A 176 5 3 HELIX 10 10 LEU A 187 GLY A 191 5 5 HELIX 11 11 TYR A 210 ASP A 215 1 6 HELIX 12 12 ALA A 218 THR A 223 5 6 HELIX 13 13 ALA A 226 MET A 231 5 6 HELIX 14 14 PRO A 232 GLN A 260 1 29 HELIX 15 15 GLU A 285 ALA A 310 1 26 HELIX 16 16 PRO A 315 ALA A 343 1 29 HELIX 17 17 ALA A 353 ASN A 371 1 19 HELIX 18 18 PRO A 373 VAL A 378 1 6 HELIX 19 19 HIS A 383 LEU A 387 5 5 HELIX 20 20 PRO A 389 VAL A 394 1 6 HELIX 21 21 ASP B 8 ARG B 26 1 19 HELIX 22 22 ARG B 26 ARG B 34 1 9 HELIX 23 23 PRO B 37 VAL B 47 1 11 HELIX 24 24 GLY B 48 LEU B 52 5 5 HELIX 25 25 PRO B 55 GLY B 59 5 5 HELIX 26 26 ASP B 64 SER B 77 1 14 HELIX 27 27 CYS B 79 ALA B 97 1 19 HELIX 28 28 ASP B 100 GLY B 109 1 10 HELIX 29 29 GLY B 144 ALA B 148 5 5 HELIX 30 30 SER B 174 TYR B 176 5 3 HELIX 31 31 LEU B 187 GLY B 191 5 5 HELIX 32 32 TYR B 210 ASP B 215 1 6 HELIX 33 33 ALA B 218 THR B 223 5 6 HELIX 34 34 ALA B 226 MET B 231 5 6 HELIX 35 35 PRO B 232 GLU B 258 1 27 HELIX 36 36 GLU B 285 ALA B 310 1 26 HELIX 37 37 PRO B 315 GLU B 342 1 28 HELIX 38 38 ALA B 343 SER B 344 5 2 HELIX 39 39 GLY B 345 SER B 350 5 6 HELIX 40 40 ALA B 353 ASN B 371 1 19 HELIX 41 41 PRO B 373 VAL B 378 1 6 HELIX 42 42 HIS B 383 LEU B 387 5 5 HELIX 43 43 PRO B 389 VAL B 394 5 6 SHEET 1 A 6 ILE A 116 SER A 119 0 SHEET 2 A 6 TRP A 150 LYS A 159 1 O PHE A 152 N SER A 117 SHEET 3 A 6 GLY A 124 VAL A 129 1 N GLY A 126 O ILE A 158 SHEET 4 A 6 GLY A 132 SER A 142 -1 O LEU A 134 N VAL A 127 SHEET 5 A 6 ASN A 193 PRO A 203 -1 O LEU A 195 N TRP A 139 SHEET 6 A 6 GLU A 177 LYS A 179 -1 N LYS A 179 O THR A 194 SHEET 1 B 4 ILE A 116 SER A 119 0 SHEET 2 B 4 TRP A 150 LYS A 159 1 O PHE A 152 N SER A 117 SHEET 3 B 4 ARG A 162 PRO A 172 -1 O ARG A 162 N LYS A 159 SHEET 4 B 4 PHE A 207 SER A 209 -1 O LEU A 208 N SER A 168 SHEET 1 C 6 ILE B 116 PRO B 122 0 SHEET 2 C 6 TRP B 150 LYS B 159 1 O TRP B 150 N SER B 117 SHEET 3 C 6 GLY B 124 VAL B 129 1 N GLY B 126 O ILE B 158 SHEET 4 C 6 GLY B 132 SER B 142 -1 O LEU B 134 N VAL B 127 SHEET 5 C 6 ASN B 193 PRO B 203 -1 O VAL B 202 N TYR B 133 SHEET 6 C 6 GLU B 177 LYS B 179 -1 N LYS B 179 O THR B 194 SHEET 1 D 4 ILE B 116 PRO B 122 0 SHEET 2 D 4 TRP B 150 LYS B 159 1 O TRP B 150 N SER B 117 SHEET 3 D 4 ARG B 162 PRO B 172 -1 O ASP B 165 N VAL B 157 SHEET 4 D 4 PHE B 207 SER B 209 -1 O LEU B 208 N SER B 168 CRYST1 69.140 175.770 179.490 90.00 90.00 90.00 I 2 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014463 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005689 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005571 0.00000 MASTER 477 0 0 43 20 0 0 6 0 0 0 62 END