HEADER HYDROLASE 31-MAR-09 3A1E TITLE CRYSTAL STRUCTURE OF THE P- AND N-DOMAINS OF HIS462GLN MUTANT COPA, A TITLE 2 COPPER-TRANSPORTING P-TYPE ATPASE, BOUND WITH AMPPCP-MG COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE COPPER-EXPORTING P-TYPE ATPASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 387-673; COMPND 5 EC: 3.6.3.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: COPA, PACS, AF_0473; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS P-TYPE ATPASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR T.TSUDA,C.TOYOSHIMA REVDAT 2 13-JUL-11 3A1E 1 VERSN REVDAT 1 21-JUL-09 3A1E 0 JRNL AUTH T.TSUDA,C.TOYOSHIMA JRNL TITL NUCLEOTIDE RECOGNITION BY COPA, A CU+-TRANSPORTING P-TYPE JRNL TITL 2 ATPASE. JRNL REF EMBO J. V. 28 1782 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19478797 JRNL DOI 10.1038/EMBOJ.2009.143 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 55707 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.210 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2963 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4028 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 211 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4031 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 317 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 49.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.18000 REMARK 3 B22 (A**2) : 0.18000 REMARK 3 B33 (A**2) : -0.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.137 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.097 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.532 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4123 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5581 ; 1.311 ; 2.015 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 538 ; 5.187 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;40.024 ;25.854 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 775 ;13.875 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.181 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 682 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2952 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1901 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2850 ; 0.292 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 312 ; 0.181 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.164 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.130 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2772 ; 0.813 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4276 ; 1.357 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1500 ; 2.034 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1305 ; 3.333 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 399 A 430 REMARK 3 RESIDUE RANGE : A 548 A 666 REMARK 3 ORIGIN FOR THE GROUP (A): 65.8206 22.9135 51.5687 REMARK 3 T TENSOR REMARK 3 T11: 0.0391 T22: -0.0593 REMARK 3 T33: -0.0537 T12: 0.0475 REMARK 3 T13: 0.0653 T23: 0.0498 REMARK 3 L TENSOR REMARK 3 L11: 1.2851 L22: 0.5338 REMARK 3 L33: 1.4509 L12: 0.5660 REMARK 3 L13: -0.9393 L23: 0.0527 REMARK 3 S TENSOR REMARK 3 S11: 0.0539 S12: 0.1357 S13: 0.0671 REMARK 3 S21: -0.0084 S22: -0.0140 S23: -0.0276 REMARK 3 S31: -0.0441 S32: -0.1688 S33: -0.0399 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 400 B 430 REMARK 3 RESIDUE RANGE : B 548 B 671 REMARK 3 ORIGIN FOR THE GROUP (A): 74.3659 41.1823 26.0437 REMARK 3 T TENSOR REMARK 3 T11: 0.0358 T22: -0.0812 REMARK 3 T33: -0.0510 T12: -0.0181 REMARK 3 T13: 0.0107 T23: 0.0538 REMARK 3 L TENSOR REMARK 3 L11: 0.5196 L22: 2.5463 REMARK 3 L33: 1.4298 L12: -0.3810 REMARK 3 L13: 0.1835 L23: -1.8936 REMARK 3 S TENSOR REMARK 3 S11: -0.1258 S12: 0.0702 S13: 0.0319 REMARK 3 S21: -0.0180 S22: 0.0537 S23: -0.0103 REMARK 3 S31: 0.0650 S32: -0.0467 S33: 0.0721 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 432 A 546 REMARK 3 ORIGIN FOR THE GROUP (A): 80.6816 5.3863 33.9142 REMARK 3 T TENSOR REMARK 3 T11: 0.0984 T22: -0.1566 REMARK 3 T33: -0.0073 T12: -0.0065 REMARK 3 T13: 0.0680 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.5818 L22: 3.1478 REMARK 3 L33: 0.8110 L12: -0.1655 REMARK 3 L13: 0.4351 L23: -0.6601 REMARK 3 S TENSOR REMARK 3 S11: 0.0349 S12: 0.2082 S13: -0.1054 REMARK 3 S21: 0.0149 S22: -0.0241 S23: -0.1854 REMARK 3 S31: -0.0317 S32: 0.0640 S33: -0.0108 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 432 B 546 REMARK 3 ORIGIN FOR THE GROUP (A): 100.9565 32.5269 36.5314 REMARK 3 T TENSOR REMARK 3 T11: -0.2502 T22: 0.0014 REMARK 3 T33: 0.4455 T12: -0.0509 REMARK 3 T13: -0.0097 T23: 0.1402 REMARK 3 L TENSOR REMARK 3 L11: 4.9805 L22: 5.2050 REMARK 3 L33: 3.6048 L12: 1.1242 REMARK 3 L13: 0.4149 L23: 0.5872 REMARK 3 S TENSOR REMARK 3 S11: -0.3619 S12: 0.4871 S13: -0.2503 REMARK 3 S21: 0.2984 S22: 0.0905 S23: -1.5505 REMARK 3 S31: -0.0821 S32: 0.5844 S33: 0.2713 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3A1E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-APR-09. REMARK 100 THE RCSB ID CODE IS RCSB028689. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : ROTATED-INCLINED DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55707 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 32.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.23200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3A1C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 6000, 1.5M NACL, 0.1M MES, PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.60900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 143.41350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.80450 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 95.60900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.80450 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 143.41350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHOR STATES THAT A FUNCTINAL UNIT IS UNKNOWN ABOUT REMARK 300 THIS PROTEIN AND WOULD LIKE TO CHANGE DIMERIC TO UNKNOWN IN REMARK REMARK 300 350. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 387 REMARK 465 GLY A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 HIS A 394 REMARK 465 GLY A 395 REMARK 465 SER A 396 REMARK 465 ARG A 397 REMARK 465 LYS A 398 REMARK 465 GLY A 399 REMARK 465 THR A 668 REMARK 465 MET A 669 REMARK 465 SER A 670 REMARK 465 LYS A 671 REMARK 465 ILE A 672 REMARK 465 LYS A 673 REMARK 465 MET B 387 REMARK 465 GLY B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 465 HIS B 393 REMARK 465 HIS B 394 REMARK 465 GLY B 395 REMARK 465 SER B 396 REMARK 465 ARG B 397 REMARK 465 LYS B 398 REMARK 465 LYS B 671 REMARK 465 ILE B 672 REMARK 465 LYS B 673 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1161 O HOH B 1154 2.06 REMARK 500 O HOH A 1132 O HOH A 1144 2.19 REMARK 500 O HOH B 1345 O HOH B 1352 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG B 447 NE ARG B 447 CZ 0.081 REMARK 500 ARG B 447 CZ ARG B 447 NH1 0.127 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 447 NE - CZ - NH1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 447 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 491 -57.43 -130.40 REMARK 500 THR B 428 -51.92 178.96 REMARK 500 VAL B 487 104.67 62.61 REMARK 500 GLU B 491 -52.39 -136.84 REMARK 500 ASP B 496 80.81 12.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 998 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 426 OG1 REMARK 620 2 ACP A 997 O1G 70.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP B 997 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A1C RELATED DB: PDB REMARK 900 AMPPCP-MG BOUND FORM (WILD TYPE) REMARK 900 RELATED ID: 3A1D RELATED DB: PDB REMARK 900 ADP-MG BOUND FORM REMARK 900 RELATED ID: 2B8E RELATED DB: PDB REMARK 900 NUCLEOTIDE UNBOUND FORM REMARK 900 RELATED ID: 2IYE RELATED DB: PDB REMARK 900 SO4 BOUND FORM REMARK 900 RELATED ID: 2ARF RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE N-DOMAIN OF ATP7B DBREF 3A1E A 398 673 UNP O29777 COPA_ARCFU 398 673 DBREF 3A1E B 398 673 UNP O29777 COPA_ARCFU 398 673 SEQADV 3A1E MET A 387 UNP O29777 EXPRESSION TAG SEQADV 3A1E GLY A 388 UNP O29777 EXPRESSION TAG SEQADV 3A1E HIS A 389 UNP O29777 EXPRESSION TAG SEQADV 3A1E HIS A 390 UNP O29777 EXPRESSION TAG SEQADV 3A1E HIS A 391 UNP O29777 EXPRESSION TAG SEQADV 3A1E HIS A 392 UNP O29777 EXPRESSION TAG SEQADV 3A1E HIS A 393 UNP O29777 EXPRESSION TAG SEQADV 3A1E HIS A 394 UNP O29777 EXPRESSION TAG SEQADV 3A1E GLY A 395 UNP O29777 EXPRESSION TAG SEQADV 3A1E SER A 396 UNP O29777 EXPRESSION TAG SEQADV 3A1E ARG A 397 UNP O29777 EXPRESSION TAG SEQADV 3A1E GLN A 462 UNP O29777 HIS 462 ENGINEERED SEQADV 3A1E MET B 387 UNP O29777 EXPRESSION TAG SEQADV 3A1E GLY B 388 UNP O29777 EXPRESSION TAG SEQADV 3A1E HIS B 389 UNP O29777 EXPRESSION TAG SEQADV 3A1E HIS B 390 UNP O29777 EXPRESSION TAG SEQADV 3A1E HIS B 391 UNP O29777 EXPRESSION TAG SEQADV 3A1E HIS B 392 UNP O29777 EXPRESSION TAG SEQADV 3A1E HIS B 393 UNP O29777 EXPRESSION TAG SEQADV 3A1E HIS B 394 UNP O29777 EXPRESSION TAG SEQADV 3A1E GLY B 395 UNP O29777 EXPRESSION TAG SEQADV 3A1E SER B 396 UNP O29777 EXPRESSION TAG SEQADV 3A1E ARG B 397 UNP O29777 EXPRESSION TAG SEQADV 3A1E GLN B 462 UNP O29777 HIS 462 ENGINEERED SEQRES 1 A 287 MET GLY HIS HIS HIS HIS HIS HIS GLY SER ARG LYS GLY SEQRES 2 A 287 ALA GLU LEU GLY ILE LEU ILE LYS ASN ALA ASP ALA LEU SEQRES 3 A 287 GLU VAL ALA GLU LYS VAL THR ALA VAL ILE PHE ASP LYS SEQRES 4 A 287 THR GLY THR LEU THR LYS GLY LYS PRO GLU VAL THR ASP SEQRES 5 A 287 LEU VAL PRO LEU ASN GLY ASP GLU ARG GLU LEU LEU ARG SEQRES 6 A 287 LEU ALA ALA ILE ALA GLU ARG ARG SER GLU GLN PRO ILE SEQRES 7 A 287 ALA GLU ALA ILE VAL LYS LYS ALA LEU GLU HIS GLY ILE SEQRES 8 A 287 GLU LEU GLY GLU PRO GLU LYS VAL GLU VAL ILE ALA GLY SEQRES 9 A 287 GLU GLY VAL VAL ALA ASP GLY ILE LEU VAL GLY ASN LYS SEQRES 10 A 287 ARG LEU MET GLU ASP PHE GLY VAL ALA VAL SER ASN GLU SEQRES 11 A 287 VAL GLU LEU ALA LEU GLU LYS LEU GLU ARG GLU ALA LYS SEQRES 12 A 287 THR ALA VAL ILE VAL ALA ARG ASN GLY ARG VAL GLU GLY SEQRES 13 A 287 ILE ILE ALA VAL SER ASP THR LEU LYS GLU SER ALA LYS SEQRES 14 A 287 PRO ALA VAL GLN GLU LEU LYS ARG MET GLY ILE LYS VAL SEQRES 15 A 287 GLY MET ILE THR GLY ASP ASN TRP ARG SER ALA GLU ALA SEQRES 16 A 287 ILE SER ARG GLU LEU ASN LEU ASP LEU VAL ILE ALA GLU SEQRES 17 A 287 VAL LEU PRO HIS GLN LYS SER GLU GLU VAL LYS LYS LEU SEQRES 18 A 287 GLN ALA LYS GLU VAL VAL ALA PHE VAL GLY ASP GLY ILE SEQRES 19 A 287 ASN ASP ALA PRO ALA LEU ALA GLN ALA ASP LEU GLY ILE SEQRES 20 A 287 ALA VAL GLY SER GLY SER ASP VAL ALA VAL GLU SER GLY SEQRES 21 A 287 ASP ILE VAL LEU ILE ARG ASP ASP LEU ARG ASP VAL VAL SEQRES 22 A 287 ALA ALA ILE GLN LEU SER ARG LYS THR MET SER LYS ILE SEQRES 23 A 287 LYS SEQRES 1 B 287 MET GLY HIS HIS HIS HIS HIS HIS GLY SER ARG LYS GLY SEQRES 2 B 287 ALA GLU LEU GLY ILE LEU ILE LYS ASN ALA ASP ALA LEU SEQRES 3 B 287 GLU VAL ALA GLU LYS VAL THR ALA VAL ILE PHE ASP LYS SEQRES 4 B 287 THR GLY THR LEU THR LYS GLY LYS PRO GLU VAL THR ASP SEQRES 5 B 287 LEU VAL PRO LEU ASN GLY ASP GLU ARG GLU LEU LEU ARG SEQRES 6 B 287 LEU ALA ALA ILE ALA GLU ARG ARG SER GLU GLN PRO ILE SEQRES 7 B 287 ALA GLU ALA ILE VAL LYS LYS ALA LEU GLU HIS GLY ILE SEQRES 8 B 287 GLU LEU GLY GLU PRO GLU LYS VAL GLU VAL ILE ALA GLY SEQRES 9 B 287 GLU GLY VAL VAL ALA ASP GLY ILE LEU VAL GLY ASN LYS SEQRES 10 B 287 ARG LEU MET GLU ASP PHE GLY VAL ALA VAL SER ASN GLU SEQRES 11 B 287 VAL GLU LEU ALA LEU GLU LYS LEU GLU ARG GLU ALA LYS SEQRES 12 B 287 THR ALA VAL ILE VAL ALA ARG ASN GLY ARG VAL GLU GLY SEQRES 13 B 287 ILE ILE ALA VAL SER ASP THR LEU LYS GLU SER ALA LYS SEQRES 14 B 287 PRO ALA VAL GLN GLU LEU LYS ARG MET GLY ILE LYS VAL SEQRES 15 B 287 GLY MET ILE THR GLY ASP ASN TRP ARG SER ALA GLU ALA SEQRES 16 B 287 ILE SER ARG GLU LEU ASN LEU ASP LEU VAL ILE ALA GLU SEQRES 17 B 287 VAL LEU PRO HIS GLN LYS SER GLU GLU VAL LYS LYS LEU SEQRES 18 B 287 GLN ALA LYS GLU VAL VAL ALA PHE VAL GLY ASP GLY ILE SEQRES 19 B 287 ASN ASP ALA PRO ALA LEU ALA GLN ALA ASP LEU GLY ILE SEQRES 20 B 287 ALA VAL GLY SER GLY SER ASP VAL ALA VAL GLU SER GLY SEQRES 21 B 287 ASP ILE VAL LEU ILE ARG ASP ASP LEU ARG ASP VAL VAL SEQRES 22 B 287 ALA ALA ILE GLN LEU SER ARG LYS THR MET SER LYS ILE SEQRES 23 B 287 LYS HET ACP A 997 31 HET MG A 998 1 HET ACP B 997 31 HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 3 ACP 2(C11 H18 N5 O12 P3) FORMUL 4 MG MG 2+ FORMUL 6 HOH *317(H2 O) HELIX 1 1 ASP A 410 VAL A 418 1 9 HELIX 2 2 ASP A 445 GLU A 457 1 13 HELIX 3 3 GLN A 462 HIS A 475 1 14 HELIX 4 4 ASN A 502 PHE A 509 1 8 HELIX 5 5 SER A 514 GLU A 527 1 14 HELIX 6 6 SER A 553 MET A 564 1 12 HELIX 7 7 ASN A 575 ASN A 587 1 13 HELIX 8 8 LEU A 596 HIS A 598 5 3 HELIX 9 9 GLN A 599 GLN A 608 1 10 HELIX 10 10 ASP A 622 ALA A 629 1 8 HELIX 11 11 LEU A 655 LEU A 664 1 10 HELIX 12 12 ASP B 410 VAL B 418 1 9 HELIX 13 13 ASP B 445 GLU B 457 1 13 HELIX 14 14 GLN B 462 GLY B 476 1 15 HELIX 15 15 ASN B 502 PHE B 509 1 8 HELIX 16 16 SER B 514 ARG B 526 1 13 HELIX 17 17 SER B 553 MET B 564 1 12 HELIX 18 18 ASN B 575 ASN B 587 1 13 HELIX 19 19 GLN B 599 GLN B 608 1 10 HELIX 20 20 ASP B 622 ALA B 629 1 8 HELIX 21 21 LEU B 655 SER B 670 1 16 SHEET 1 A 7 ILE A 404 ILE A 406 0 SHEET 2 A 7 ILE A 648 LEU A 650 -1 O VAL A 649 N LEU A 405 SHEET 3 A 7 LEU A 631 VAL A 635 1 N ALA A 634 O LEU A 650 SHEET 4 A 7 VAL A 613 GLY A 617 1 N PHE A 615 O ILE A 633 SHEET 5 A 7 ALA A 420 ASP A 424 1 N ILE A 422 O ALA A 614 SHEET 6 A 7 LYS A 567 ILE A 571 1 O LYS A 567 N VAL A 421 SHEET 7 A 7 LEU A 590 ILE A 592 1 O ILE A 592 N MET A 570 SHEET 1 B 6 GLU A 435 PRO A 441 0 SHEET 2 B 6 ARG A 539 SER A 547 -1 O ILE A 543 N VAL A 440 SHEET 3 B 6 THR A 530 ARG A 536 -1 N THR A 530 O VAL A 546 SHEET 4 B 6 ILE A 498 GLY A 501 -1 N LEU A 499 O ALA A 535 SHEET 5 B 6 GLY A 492 ALA A 495 -1 N ALA A 495 O ILE A 498 SHEET 6 B 6 VAL A 485 ILE A 488 -1 N GLU A 486 O VAL A 494 SHEET 1 C 7 ILE B 404 ILE B 406 0 SHEET 2 C 7 ILE B 648 LEU B 650 -1 O VAL B 649 N LEU B 405 SHEET 3 C 7 LEU B 631 VAL B 635 1 N ALA B 634 O LEU B 650 SHEET 4 C 7 VAL B 613 GLY B 617 1 N PHE B 615 O ILE B 633 SHEET 5 C 7 ALA B 420 ASP B 424 1 N ASP B 424 O VAL B 616 SHEET 6 C 7 LYS B 567 ILE B 571 1 O LYS B 567 N VAL B 421 SHEET 7 C 7 LEU B 590 ILE B 592 1 O ILE B 592 N MET B 570 SHEET 1 D 5 GLU B 435 PRO B 441 0 SHEET 2 D 5 ARG B 539 SER B 547 -1 O ILE B 543 N VAL B 440 SHEET 3 D 5 THR B 530 ARG B 536 -1 N THR B 530 O VAL B 546 SHEET 4 D 5 ILE B 498 GLY B 501 -1 N LEU B 499 O ALA B 535 SHEET 5 D 5 GLY B 492 ALA B 495 -1 N ALA B 495 O ILE B 498 LINK OG1 THR A 426 MG MG A 998 1555 1555 2.30 LINK O1G ACP A 997 MG MG A 998 1555 1555 2.26 SITE 1 AC1 23 ASP A 424 LYS A 425 THR A 426 GLU A 457 SITE 2 AC1 23 GLN A 462 ILE A 464 GLY A 490 GLU A 491 SITE 3 AC1 23 GLY A 492 VAL A 500 GLY A 501 ASN A 502 SITE 4 AC1 23 VAL A 532 THR A 572 GLY A 573 ASP A 574 SITE 5 AC1 23 PRO A 597 LYS A 600 MG A 998 HOH A1121 SITE 6 AC1 23 HOH A1127 HOH A1141 HOH A1150 SITE 1 AC2 4 ASP A 424 THR A 426 ACP A 997 HOH A1001 SITE 1 AC3 16 ASP B 424 LYS B 425 THR B 426 GLU B 457 SITE 2 AC3 16 GLN B 462 GLY B 490 GLU B 491 VAL B 493 SITE 3 AC3 16 VAL B 500 GLY B 501 ASN B 502 THR B 572 SITE 4 AC3 16 GLY B 573 ASP B 574 LYS B 600 HOH B1391 CRYST1 90.526 90.526 191.218 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011047 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011047 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005230 0.00000 MASTER 473 0 3 21 25 0 11 6 0 0 0 46 END