HEADER HYDROLASE 31-MAR-09 3A1C TITLE CRYSTAL STRUCTURE OF THE P- AND N-DOMAINS OF COPA, A COPPER- TITLE 2 TRANSPORTING P-TYPE ATPASE, BOUND WITH AMPPCP-MG COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE COPPER-EXPORTING P-TYPE ATPASE A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 387-673; COMPND 5 EC: 3.6.3.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: COPA, PACS, AF_0473; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS P-TYPE ATPASE, ATP-BINDING, CELL MEMBRANE, COPPER TRANSPORT, KEYWDS 2 HYDROLASE, ION TRANSPORT, MAGNESIUM, MEMBRANE, METAL-BINDING, KEYWDS 3 NUCLEOTIDE-BINDING, PHOSPHOPROTEIN, TRANSMEMBRANE, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR T.TSUDA,C.TOYOSHIMA REVDAT 2 13-JUL-11 3A1C 1 VERSN REVDAT 1 21-JUL-09 3A1C 0 JRNL AUTH T.TSUDA,C.TOYOSHIMA JRNL TITL NUCLEOTIDE RECOGNITION BY COPA, A CU+-TRANSPORTING P-TYPE JRNL TITL 2 ATPASE. JRNL REF EMBO J. V. 28 1782 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19478797 JRNL DOI 10.1038/EMBOJ.2009.143 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 65461 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3500 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4675 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2760 REMARK 3 BIN FREE R VALUE SET COUNT : 256 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4037 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 63 REMARK 3 SOLVENT ATOMS : 473 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 44.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.17000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.115 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.112 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.990 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4131 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5593 ; 1.341 ; 2.013 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 538 ; 5.305 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;36.223 ;25.732 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 775 ;13.589 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.170 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 684 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2956 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1952 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2841 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 428 ; 0.195 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 1 ; 0.020 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.170 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.111 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2765 ; 0.849 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4280 ; 1.388 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1505 ; 2.256 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1313 ; 3.739 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 399 A 430 REMARK 3 RESIDUE RANGE : A 548 A 666 REMARK 3 ORIGIN FOR THE GROUP (A): 65.8702 23.0280 51.7836 REMARK 3 T TENSOR REMARK 3 T11: 0.0368 T22: -0.0449 REMARK 3 T33: -0.0507 T12: 0.0418 REMARK 3 T13: 0.0660 T23: 0.0302 REMARK 3 L TENSOR REMARK 3 L11: 0.9109 L22: 0.4523 REMARK 3 L33: 1.1229 L12: 0.4464 REMARK 3 L13: -0.6786 L23: 0.0472 REMARK 3 S TENSOR REMARK 3 S11: 0.0673 S12: 0.1178 S13: 0.0398 REMARK 3 S21: 0.0323 S22: -0.0579 S23: -0.0303 REMARK 3 S31: -0.0349 S32: -0.1215 S33: -0.0095 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 400 B 430 REMARK 3 RESIDUE RANGE : B 548 B 671 REMARK 3 ORIGIN FOR THE GROUP (A): 74.2489 41.3352 26.1712 REMARK 3 T TENSOR REMARK 3 T11: 0.0277 T22: -0.0592 REMARK 3 T33: -0.0513 T12: -0.0127 REMARK 3 T13: 0.0184 T23: 0.0495 REMARK 3 L TENSOR REMARK 3 L11: 0.4519 L22: 1.9543 REMARK 3 L33: 1.2537 L12: -0.2005 REMARK 3 L13: 0.0714 L23: -1.5540 REMARK 3 S TENSOR REMARK 3 S11: -0.1316 S12: 0.0809 S13: 0.0366 REMARK 3 S21: 0.0229 S22: 0.0868 S23: -0.0079 REMARK 3 S31: 0.0433 S32: -0.0422 S33: 0.0448 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 432 A 546 REMARK 3 ORIGIN FOR THE GROUP (A): 80.7587 5.4150 34.1167 REMARK 3 T TENSOR REMARK 3 T11: 0.0570 T22: -0.1203 REMARK 3 T33: -0.0081 T12: 0.0158 REMARK 3 T13: 0.0790 T23: -0.0146 REMARK 3 L TENSOR REMARK 3 L11: 0.6082 L22: 2.3493 REMARK 3 L33: 0.8945 L12: -0.3416 REMARK 3 L13: 0.5299 L23: -0.4480 REMARK 3 S TENSOR REMARK 3 S11: 0.0837 S12: 0.1992 S13: -0.0843 REMARK 3 S21: -0.0023 S22: -0.0392 S23: -0.1118 REMARK 3 S31: -0.0320 S32: 0.0863 S33: -0.0445 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 432 B 546 REMARK 3 ORIGIN FOR THE GROUP (A): 100.9534 32.6206 36.8823 REMARK 3 T TENSOR REMARK 3 T11: -0.2245 T22: -0.0093 REMARK 3 T33: 0.3421 T12: -0.0277 REMARK 3 T13: -0.0053 T23: 0.1546 REMARK 3 L TENSOR REMARK 3 L11: 3.4774 L22: 3.3736 REMARK 3 L33: 3.3315 L12: 0.6662 REMARK 3 L13: -0.2129 L23: 0.0844 REMARK 3 S TENSOR REMARK 3 S11: -0.2310 S12: 0.2118 S13: -0.2046 REMARK 3 S21: 0.2598 S22: -0.0986 S23: -1.1856 REMARK 3 S31: -0.0649 S32: 0.4431 S33: 0.3296 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 3A1C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-APR-09. REMARK 100 THE RCSB ID CODE IS RCSB028687. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-SEP-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : ROTATED-INCLINED DOUBLE-CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65461 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.29100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2B8E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5% PEG 6000, 1.5M NACL, 0.1M MES, PH REMARK 280 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.89400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 143.84100 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.94700 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 95.89400 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 47.94700 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 143.84100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE AUTHOR STATES THAT A FUNCTINAL UNIT IS UNKNOWN ABOUT REMARK 300 THIS PROTEIN AND WOULD LIKE TO CHANGE DIMERIC TO UNKNOWN IN REMARK REMARK 300 350. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 387 REMARK 465 GLY A 388 REMARK 465 HIS A 389 REMARK 465 HIS A 390 REMARK 465 HIS A 391 REMARK 465 HIS A 392 REMARK 465 HIS A 393 REMARK 465 HIS A 394 REMARK 465 GLY A 395 REMARK 465 SER A 396 REMARK 465 ARG A 397 REMARK 465 LYS A 398 REMARK 465 GLY A 399 REMARK 465 LYS A 667 REMARK 465 THR A 668 REMARK 465 MET A 669 REMARK 465 SER A 670 REMARK 465 LYS A 671 REMARK 465 ILE A 672 REMARK 465 LYS A 673 REMARK 465 MET B 387 REMARK 465 GLY B 388 REMARK 465 HIS B 389 REMARK 465 HIS B 390 REMARK 465 HIS B 391 REMARK 465 HIS B 392 REMARK 465 HIS B 393 REMARK 465 HIS B 394 REMARK 465 GLY B 395 REMARK 465 SER B 396 REMARK 465 ARG B 397 REMARK 465 LYS B 398 REMARK 465 GLY B 399 REMARK 465 LYS B 673 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1428 O HOH B 1435 1.94 REMARK 500 O HOH B 1211 O HOH B 1419 2.10 REMARK 500 O HOH A 1216 O HOH B 1211 2.12 REMARK 500 O HOH A 1133 O HOH A 1153 2.17 REMARK 500 OE1 GLU A 474 O HOH A 1091 2.17 REMARK 500 O HOH A 1194 O HOH A 1205 2.17 REMARK 500 O HOH B 1360 O HOH B 1368 2.18 REMARK 500 O HOH B 1326 O HOH B 1328 2.18 REMARK 500 O HOH B 1304 O HOH B 1305 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 526 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 526 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 491 -57.91 -128.21 REMARK 500 HIS A 598 22.79 49.04 REMARK 500 THR B 428 -44.59 -159.79 REMARK 500 GLU B 481 136.96 -35.52 REMARK 500 PRO B 482 111.78 -37.42 REMARK 500 GLU B 491 -59.11 -132.97 REMARK 500 ASP B 496 93.09 -64.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 998 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACP A 997 O1G REMARK 620 2 ACP A 997 O2B 82.6 REMARK 620 3 HOH A1003 O 147.8 97.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 997 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP B 997 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3A1D RELATED DB: PDB REMARK 900 ADP-MG BOUND FORM REMARK 900 RELATED ID: 3A1E RELATED DB: PDB REMARK 900 HIS462GLN MUTANT REMARK 900 RELATED ID: 2B8E RELATED DB: PDB REMARK 900 NUCLEOTIDE UNBOUND FORM REMARK 900 RELATED ID: 2IYE RELATED DB: PDB REMARK 900 SO4 BOUND FORM REMARK 900 RELATED ID: 2ARF RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE N-DOMAIN OF ATP7B DBREF 3A1C A 398 673 UNP O29777 COPA_ARCFU 398 673 DBREF 3A1C B 398 673 UNP O29777 COPA_ARCFU 398 673 SEQADV 3A1C MET A 387 UNP O29777 EXPRESSION TAG SEQADV 3A1C GLY A 388 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS A 389 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS A 390 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS A 391 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS A 392 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS A 393 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS A 394 UNP O29777 EXPRESSION TAG SEQADV 3A1C GLY A 395 UNP O29777 EXPRESSION TAG SEQADV 3A1C SER A 396 UNP O29777 EXPRESSION TAG SEQADV 3A1C ARG A 397 UNP O29777 EXPRESSION TAG SEQADV 3A1C MET B 387 UNP O29777 EXPRESSION TAG SEQADV 3A1C GLY B 388 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS B 389 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS B 390 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS B 391 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS B 392 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS B 393 UNP O29777 EXPRESSION TAG SEQADV 3A1C HIS B 394 UNP O29777 EXPRESSION TAG SEQADV 3A1C GLY B 395 UNP O29777 EXPRESSION TAG SEQADV 3A1C SER B 396 UNP O29777 EXPRESSION TAG SEQADV 3A1C ARG B 397 UNP O29777 EXPRESSION TAG SEQRES 1 A 287 MET GLY HIS HIS HIS HIS HIS HIS GLY SER ARG LYS GLY SEQRES 2 A 287 ALA GLU LEU GLY ILE LEU ILE LYS ASN ALA ASP ALA LEU SEQRES 3 A 287 GLU VAL ALA GLU LYS VAL THR ALA VAL ILE PHE ASP LYS SEQRES 4 A 287 THR GLY THR LEU THR LYS GLY LYS PRO GLU VAL THR ASP SEQRES 5 A 287 LEU VAL PRO LEU ASN GLY ASP GLU ARG GLU LEU LEU ARG SEQRES 6 A 287 LEU ALA ALA ILE ALA GLU ARG ARG SER GLU HIS PRO ILE SEQRES 7 A 287 ALA GLU ALA ILE VAL LYS LYS ALA LEU GLU HIS GLY ILE SEQRES 8 A 287 GLU LEU GLY GLU PRO GLU LYS VAL GLU VAL ILE ALA GLY SEQRES 9 A 287 GLU GLY VAL VAL ALA ASP GLY ILE LEU VAL GLY ASN LYS SEQRES 10 A 287 ARG LEU MET GLU ASP PHE GLY VAL ALA VAL SER ASN GLU SEQRES 11 A 287 VAL GLU LEU ALA LEU GLU LYS LEU GLU ARG GLU ALA LYS SEQRES 12 A 287 THR ALA VAL ILE VAL ALA ARG ASN GLY ARG VAL GLU GLY SEQRES 13 A 287 ILE ILE ALA VAL SER ASP THR LEU LYS GLU SER ALA LYS SEQRES 14 A 287 PRO ALA VAL GLN GLU LEU LYS ARG MET GLY ILE LYS VAL SEQRES 15 A 287 GLY MET ILE THR GLY ASP ASN TRP ARG SER ALA GLU ALA SEQRES 16 A 287 ILE SER ARG GLU LEU ASN LEU ASP LEU VAL ILE ALA GLU SEQRES 17 A 287 VAL LEU PRO HIS GLN LYS SER GLU GLU VAL LYS LYS LEU SEQRES 18 A 287 GLN ALA LYS GLU VAL VAL ALA PHE VAL GLY ASP GLY ILE SEQRES 19 A 287 ASN ASP ALA PRO ALA LEU ALA GLN ALA ASP LEU GLY ILE SEQRES 20 A 287 ALA VAL GLY SER GLY SER ASP VAL ALA VAL GLU SER GLY SEQRES 21 A 287 ASP ILE VAL LEU ILE ARG ASP ASP LEU ARG ASP VAL VAL SEQRES 22 A 287 ALA ALA ILE GLN LEU SER ARG LYS THR MET SER LYS ILE SEQRES 23 A 287 LYS SEQRES 1 B 287 MET GLY HIS HIS HIS HIS HIS HIS GLY SER ARG LYS GLY SEQRES 2 B 287 ALA GLU LEU GLY ILE LEU ILE LYS ASN ALA ASP ALA LEU SEQRES 3 B 287 GLU VAL ALA GLU LYS VAL THR ALA VAL ILE PHE ASP LYS SEQRES 4 B 287 THR GLY THR LEU THR LYS GLY LYS PRO GLU VAL THR ASP SEQRES 5 B 287 LEU VAL PRO LEU ASN GLY ASP GLU ARG GLU LEU LEU ARG SEQRES 6 B 287 LEU ALA ALA ILE ALA GLU ARG ARG SER GLU HIS PRO ILE SEQRES 7 B 287 ALA GLU ALA ILE VAL LYS LYS ALA LEU GLU HIS GLY ILE SEQRES 8 B 287 GLU LEU GLY GLU PRO GLU LYS VAL GLU VAL ILE ALA GLY SEQRES 9 B 287 GLU GLY VAL VAL ALA ASP GLY ILE LEU VAL GLY ASN LYS SEQRES 10 B 287 ARG LEU MET GLU ASP PHE GLY VAL ALA VAL SER ASN GLU SEQRES 11 B 287 VAL GLU LEU ALA LEU GLU LYS LEU GLU ARG GLU ALA LYS SEQRES 12 B 287 THR ALA VAL ILE VAL ALA ARG ASN GLY ARG VAL GLU GLY SEQRES 13 B 287 ILE ILE ALA VAL SER ASP THR LEU LYS GLU SER ALA LYS SEQRES 14 B 287 PRO ALA VAL GLN GLU LEU LYS ARG MET GLY ILE LYS VAL SEQRES 15 B 287 GLY MET ILE THR GLY ASP ASN TRP ARG SER ALA GLU ALA SEQRES 16 B 287 ILE SER ARG GLU LEU ASN LEU ASP LEU VAL ILE ALA GLU SEQRES 17 B 287 VAL LEU PRO HIS GLN LYS SER GLU GLU VAL LYS LYS LEU SEQRES 18 B 287 GLN ALA LYS GLU VAL VAL ALA PHE VAL GLY ASP GLY ILE SEQRES 19 B 287 ASN ASP ALA PRO ALA LEU ALA GLN ALA ASP LEU GLY ILE SEQRES 20 B 287 ALA VAL GLY SER GLY SER ASP VAL ALA VAL GLU SER GLY SEQRES 21 B 287 ASP ILE VAL LEU ILE ARG ASP ASP LEU ARG ASP VAL VAL SEQRES 22 B 287 ALA ALA ILE GLN LEU SER ARG LYS THR MET SER LYS ILE SEQRES 23 B 287 LYS HET ACP A 997 31 HET MG A 998 1 HET ACP B 997 31 HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 3 ACP 2(C11 H18 N5 O12 P3) FORMUL 4 MG MG 2+ FORMUL 6 HOH *473(H2 O) HELIX 1 1 ASP A 410 VAL A 418 1 9 HELIX 2 2 ASP A 445 GLU A 457 1 13 HELIX 3 3 HIS A 462 HIS A 475 1 14 HELIX 4 4 ASN A 502 PHE A 509 1 8 HELIX 5 5 SER A 514 GLU A 527 1 14 HELIX 6 6 SER A 553 MET A 564 1 12 HELIX 7 7 ASN A 575 ASN A 587 1 13 HELIX 8 8 GLN A 599 GLN A 608 1 10 HELIX 9 9 ASP A 622 ALA A 629 1 8 HELIX 10 10 LEU A 655 LEU A 664 1 10 HELIX 11 11 ASP B 410 VAL B 418 1 9 HELIX 12 12 LYS B 425 LEU B 429 1 5 HELIX 13 13 ASP B 445 ARG B 458 1 14 HELIX 14 14 HIS B 462 HIS B 475 1 14 HELIX 15 15 ASN B 502 PHE B 509 1 8 HELIX 16 16 SER B 514 ARG B 526 1 13 HELIX 17 17 SER B 553 MET B 564 1 12 HELIX 18 18 ASN B 575 ASN B 587 1 13 HELIX 19 19 GLN B 599 GLN B 608 1 10 HELIX 20 20 ASP B 622 ALA B 629 1 8 HELIX 21 21 LEU B 655 SER B 670 1 16 SHEET 1 A 7 ILE A 404 ILE A 406 0 SHEET 2 A 7 ILE A 648 LEU A 650 -1 O VAL A 649 N LEU A 405 SHEET 3 A 7 LEU A 631 VAL A 635 1 N ALA A 634 O LEU A 650 SHEET 4 A 7 VAL A 613 GLY A 617 1 N PHE A 615 O ILE A 633 SHEET 5 A 7 ALA A 420 ASP A 424 1 N ASP A 424 O VAL A 616 SHEET 6 A 7 LYS A 567 ILE A 571 1 O LYS A 567 N VAL A 421 SHEET 7 A 7 LEU A 590 ILE A 592 1 O ILE A 592 N MET A 570 SHEET 1 B 6 GLU A 435 PRO A 441 0 SHEET 2 B 6 ARG A 539 SER A 547 -1 O ILE A 543 N VAL A 440 SHEET 3 B 6 THR A 530 ARG A 536 -1 N VAL A 534 O GLU A 541 SHEET 4 B 6 ILE A 498 GLY A 501 -1 N GLY A 501 O ILE A 533 SHEET 5 B 6 GLY A 492 ALA A 495 -1 N ALA A 495 O ILE A 498 SHEET 6 B 6 VAL A 485 ILE A 488 -1 N ILE A 488 O GLY A 492 SHEET 1 C 7 ILE B 404 ILE B 406 0 SHEET 2 C 7 ILE B 648 LEU B 650 -1 O VAL B 649 N LEU B 405 SHEET 3 C 7 LEU B 631 VAL B 635 1 N ALA B 634 O LEU B 650 SHEET 4 C 7 VAL B 613 GLY B 617 1 N PHE B 615 O ILE B 633 SHEET 5 C 7 ALA B 420 ASP B 424 1 N ILE B 422 O VAL B 616 SHEET 6 C 7 LYS B 567 ILE B 571 1 O LYS B 567 N VAL B 421 SHEET 7 C 7 LEU B 590 ILE B 592 1 O ILE B 592 N MET B 570 SHEET 1 D 6 GLU B 435 PRO B 441 0 SHEET 2 D 6 ARG B 539 SER B 547 -1 O ILE B 543 N VAL B 440 SHEET 3 D 6 THR B 530 ARG B 536 -1 N VAL B 534 O GLU B 541 SHEET 4 D 6 ILE B 498 GLY B 501 -1 N GLY B 501 O ILE B 533 SHEET 5 D 6 GLY B 492 ALA B 495 -1 N ALA B 495 O ILE B 498 SHEET 6 D 6 GLU B 486 ILE B 488 -1 N ILE B 488 O GLY B 492 LINK O1G ACP A 997 MG MG A 998 1555 1555 1.97 LINK O2B ACP A 997 MG MG A 998 1555 1555 2.49 LINK MG MG A 998 O HOH A1003 1555 1555 2.42 SITE 1 AC1 24 ASP A 424 LYS A 425 THR A 426 GLU A 457 SITE 2 AC1 24 HIS A 462 ILE A 464 GLY A 490 GLU A 491 SITE 3 AC1 24 GLY A 492 VAL A 500 GLY A 501 ASN A 502 SITE 4 AC1 24 VAL A 532 THR A 572 GLY A 573 ASP A 574 SITE 5 AC1 24 LYS A 600 MG A 998 HOH A1001 HOH A1156 SITE 6 AC1 24 HOH A1173 HOH A1190 HOH A1196 HOH A1199 SITE 1 AC2 6 ASP A 424 LYS A 600 ACP A 997 HOH A1001 SITE 2 AC2 6 HOH A1002 HOH A1003 SITE 1 AC3 23 ASP B 424 LYS B 425 THR B 426 GLU B 457 SITE 2 AC3 23 SER B 460 HIS B 462 ILE B 464 GLY B 490 SITE 3 AC3 23 GLU B 491 VAL B 493 VAL B 500 GLY B 501 SITE 4 AC3 23 ASN B 502 THR B 572 GLY B 573 ASP B 574 SITE 5 AC3 23 LYS B 600 HOH B1454 HOH B1471 HOH B1480 SITE 6 AC3 23 HOH B1483 HOH B1486 HOH B1504 CRYST1 90.787 90.787 191.788 90.00 90.00 90.00 P 43 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011015 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011015 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005214 0.00000 MASTER 462 0 3 21 26 0 14 6 0 0 0 46 END