HEADER DNA 26-NOV-97 363D TITLE HIGH-RESOLUTION CRYSTAL STRUCTURE OF A FULLY MODIFIED N3'-> P5' TITLE 2 PHOSPHORAMIDATE DNA DODECAMER DUPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*(C42)P*(G38)P*(C42)P*(G38)P*(A43)P*(A43)P*(NYM) COMPND 3 P*(NYM)P*(C42)P*(G38)P*(C42)P*DG)-3'; COMPND 4 CHAIN: A, B, C, D, E, F; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS A-DNA, MODIFIED, DNA EXPDTA X-RAY DIFFRACTION AUTHOR V.TERESHKO,S.GRYAZNOV,M.EGLI REVDAT 5 16-NOV-11 363D 1 VERSN HETATM REVDAT 4 24-FEB-09 363D 1 VERSN REVDAT 3 28-JUN-02 363D 1 REMARK REVDAT 2 27-NOV-00 363D 5 REVDAT 1 15-DEC-97 363D 0 JRNL AUTH V.TERESHKO,S.GRYAZNOV,M.EGLI JRNL TITL CONSEQUENCES OF REPLACING THE DNA 3'-OXYGEN BY AN AMINO JRNL TITL 2 GROUP: HIGH-RESOLUTION CRYSTAL STRUCTURE OF A FULLY MODIFIED JRNL TITL 3 N3'--> P5' PHOSPHORAMIDATE DNA DODECAMER DUPLEX JRNL REF J.AM.CHEM.SOC. V. 120 269 1998 JRNL REFN ISSN 0002-7863 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 86.9 REMARK 3 NUMBER OF REFLECTIONS : 5854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 15.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1458 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE CRYSTAL IS A PRECISE MEROHEDRAL TWIN AND THE REMARK 3 COORDINATES REPRESENT ONE COLUMN CONSISTING OF THREE REMARK 3 DODECAMER DUPLEXES (ALL ATOMS WITH OCCUPANCY 0.5, HALF REMARK 3 THE WATERS HAVE OCCUPANCY 1.0, THE OTHER HALF ZERO). REMARK 3 TOTAL NUMBER OF SOLVENT ATOMS REFERS TO R3 ASYMMETRIC UNIT. REMARK 4 REMARK 4 363D COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-96 REMARK 200 TEMPERATURE (KELVIN) : 290.00 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6737 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 34.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 11.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: A-FORM DUPLEX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.00, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.00K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 20.07500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 11.59031 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 101.40333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 20.07500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 11.59031 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 101.40333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 20.07500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 11.59031 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 101.40333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 20.07500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 11.59031 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 101.40333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 20.07500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 11.59031 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 101.40333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 20.07500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 11.59031 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 101.40333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 23.18061 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 202.80667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 23.18061 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 202.80667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 23.18061 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 202.80667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 23.18061 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 202.80667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 23.18061 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 202.80667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 23.18061 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 202.80667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 N NH4 A 226 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 A 228 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A 250 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 B 225 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 B 227 LIES ON A SPECIAL POSITION. REMARK 375 CL CL B 249 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 C 244 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 C 248 LIES ON A SPECIAL POSITION. REMARK 375 CL CL C 260 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 D 241 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 D 247 LIES ON A SPECIAL POSITION. REMARK 375 CL CL D 257 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 E 230 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 E 234 LIES ON A SPECIAL POSITION. REMARK 375 CL CL E 252 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 F 231 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 F 233 LIES ON A SPECIAL POSITION. REMARK 375 CL CL F 253 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 E 229 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 E 235 LIES ON A SPECIAL POSITION. REMARK 375 CL CL E 251 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 F 232 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 F 236 LIES ON A SPECIAL POSITION. REMARK 375 CL CL F 254 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 A 237 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 A 239 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A 255 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 B 238 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 B 240 LIES ON A SPECIAL POSITION. REMARK 375 CL CL B 256 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 C 243 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 C 245 LIES ON A SPECIAL POSITION. REMARK 375 CL CL C 259 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 D 242 LIES ON A SPECIAL POSITION. REMARK 375 N NH4 D 246 LIES ON A SPECIAL POSITION. REMARK 375 CL CL D 258 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 381 LIES ON A SPECIAL POSITION. REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NH4 A 237 REMARK 615 NH4 A 239 REMARK 615 CL A 255 REMARK 615 NH4 B 238 REMARK 615 NH4 B 240 REMARK 615 CL B 256 REMARK 615 NH4 C 243 REMARK 615 NH4 C 245 REMARK 615 CL C 259 REMARK 615 NH4 C 244 REMARK 615 NH4 C 248 REMARK 615 CL C 260 REMARK 615 NH4 D 242 REMARK 615 NH4 D 246 REMARK 615 CL D 258 REMARK 615 NH4 D 241 REMARK 615 NH4 D 247 REMARK 615 CL D 257 REMARK 615 HOH A 403 REMARK 615 HOH A 404 REMARK 615 HOH A 405 REMARK 615 HOH A 406 REMARK 615 HOH A 410 REMARK 615 HOH A 411 REMARK 615 HOH A 414 REMARK 615 HOH A 415 REMARK 615 HOH A 417 REMARK 615 HOH A 419 REMARK 615 HOH A 423 REMARK 615 HOH A 425 REMARK 615 HOH A 426 REMARK 615 HOH A 428 REMARK 615 HOH A 431 REMARK 615 HOH A 492 REMARK 615 HOH A 499 REMARK 615 HOH B 407 REMARK 615 HOH B 408 REMARK 615 HOH B 409 REMARK 615 HOH B 412 REMARK 615 HOH B 413 REMARK 615 HOH B 416 REMARK 615 HOH B 420 REMARK 615 HOH B 421 REMARK 615 HOH B 422 REMARK 615 HOH B 424 REMARK 615 HOH B 427 REMARK 615 HOH B 429 REMARK 615 HOH B 430 REMARK 615 HOH B 493 REMARK 615 HOH B 495 REMARK 615 HOH B 498 REMARK 615 HOH C 418 REMARK 615 HOH C 440 REMARK 615 HOH C 441 REMARK 615 HOH C 442 REMARK 615 HOH C 443 REMARK 615 HOH C 444 REMARK 615 HOH C 445 REMARK 615 HOH C 446 REMARK 615 HOH C 448 REMARK 615 HOH C 449 REMARK 615 HOH C 450 REMARK 615 HOH C 452 REMARK 615 HOH C 454 REMARK 615 HOH C 456 REMARK 615 HOH C 457 REMARK 615 HOH C 459 REMARK 615 HOH C 462 REMARK 615 HOH C 463 REMARK 615 HOH C 465 REMARK 615 HOH C 466 REMARK 615 HOH C 467 REMARK 615 HOH C 470 REMARK 615 HOH C 483 REMARK 615 HOH C 484 REMARK 615 HOH C 486 REMARK 615 HOH D 432 REMARK 615 HOH D 433 REMARK 615 HOH D 434 REMARK 615 HOH D 435 REMARK 615 HOH D 436 REMARK 615 HOH D 437 REMARK 615 HOH D 438 REMARK 615 HOH D 439 REMARK 615 HOH D 447 REMARK 615 HOH D 451 REMARK 615 HOH D 453 REMARK 615 HOH D 455 REMARK 615 HOH D 458 REMARK 615 HOH D 460 REMARK 615 HOH D 461 REMARK 615 HOH D 464 REMARK 615 HOH D 468 REMARK 615 HOH D 469 REMARK 615 HOH D 471 REMARK 615 HOH D 472 REMARK 615 HOH D 473 REMARK 615 HOH D 474 REMARK 615 HOH D 475 REMARK 615 HOH D 476 REMARK 615 HOH D 477 REMARK 615 HOH D 478 REMARK 615 HOH D 479 REMARK 615 HOH D 480 REMARK 615 HOH D 481 REMARK 615 HOH D 482 REMARK 615 HOH D 485 REMARK 615 HOH D 487 REMARK 615 HOH D 488 REMARK 615 HOH D 497 REMARK 615 HOH D 500 REMARK 615 HOH E 491 REMARK 615 HOH F 489 REMARK 615 HOH F 490 REMARK 615 HOH F 494 REMARK 615 HOH F 496 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 A 226 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 A 228 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 B 225 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 B 227 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 249 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 E 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 E 235 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL E 251 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 E 230 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 E 234 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL E 252 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 F 232 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 F 231 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 F 236 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL F 254 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 F 233 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL F 253 DBREF 363D A 1 12 PDB 363D 363D 1 12 DBREF 363D B 13 24 PDB 363D 363D 13 24 DBREF 363D C 101 112 PDB 363D 363D 101 112 DBREF 363D D 113 124 PDB 363D 363D 113 124 DBREF 363D E 201 212 PDB 363D 363D 201 212 DBREF 363D F 213 224 PDB 363D 363D 213 224 SEQRES 1 A 12 C42 G38 C42 G38 A43 A43 NYM NYM C42 G38 C42 DG SEQRES 1 B 12 C42 G38 C42 G38 A43 A43 NYM NYM C42 G38 C42 DG SEQRES 1 C 12 C42 G38 C42 G38 A43 A43 NYM NYM C42 G38 C42 DG SEQRES 1 D 12 C42 G38 C42 G38 A43 A43 NYM NYM C42 G38 C42 DG SEQRES 1 E 12 C42 G38 C42 G38 A43 A43 NYM NYM C42 G38 C42 DG SEQRES 1 F 12 C42 G38 C42 G38 A43 A43 NYM NYM C42 G38 C42 DG MODRES 363D C42 A 1 DC MODRES 363D G38 A 2 DG MODRES 363D C42 A 3 DC MODRES 363D G38 A 4 DG MODRES 363D A43 A 5 DA MODRES 363D A43 A 6 DA MODRES 363D C42 A 9 DC MODRES 363D G38 A 10 DG MODRES 363D C42 A 11 DC MODRES 363D C42 B 13 DC MODRES 363D G38 B 14 DG MODRES 363D C42 B 15 DC MODRES 363D G38 B 16 DG MODRES 363D A43 B 17 DA MODRES 363D A43 B 18 DA MODRES 363D C42 B 21 DC MODRES 363D G38 B 22 DG MODRES 363D C42 B 23 DC MODRES 363D C42 C 101 DC MODRES 363D G38 C 102 DG MODRES 363D C42 C 103 DC MODRES 363D G38 C 104 DG MODRES 363D A43 C 105 DA MODRES 363D A43 C 106 DA MODRES 363D C42 C 109 DC MODRES 363D G38 C 110 DG MODRES 363D C42 C 111 DC MODRES 363D C42 D 113 DC MODRES 363D G38 D 114 DG MODRES 363D C42 D 115 DC MODRES 363D G38 D 116 DG MODRES 363D A43 D 117 DA MODRES 363D A43 D 118 DA MODRES 363D C42 D 121 DC MODRES 363D G38 D 122 DG MODRES 363D C42 D 123 DC MODRES 363D C42 E 201 DC MODRES 363D G38 E 202 DG MODRES 363D C42 E 203 DC MODRES 363D G38 E 204 DG MODRES 363D A43 E 205 DA MODRES 363D A43 E 206 DA MODRES 363D C42 E 209 DC MODRES 363D G38 E 210 DG MODRES 363D C42 E 211 DC MODRES 363D C42 F 213 DC MODRES 363D G38 F 214 DG MODRES 363D C42 F 215 DC MODRES 363D G38 F 216 DG MODRES 363D A43 F 217 DA MODRES 363D A43 F 218 DA MODRES 363D C42 F 221 DC MODRES 363D G38 F 222 DG MODRES 363D C42 F 223 DC HET C42 A 1 17 HET G38 A 2 23 HET C42 A 3 20 HET G38 A 4 23 HET A43 A 5 22 HET A43 A 6 22 HET NYM A 7 21 HET NYM A 8 21 HET C42 A 9 20 HET G38 A 10 23 HET C42 A 11 20 HET C42 B 13 17 HET G38 B 14 23 HET C42 B 15 20 HET G38 B 16 23 HET A43 B 17 22 HET A43 B 18 22 HET NYM B 19 21 HET NYM B 20 21 HET C42 B 21 20 HET G38 B 22 23 HET C42 B 23 20 HET C42 C 101 17 HET G38 C 102 23 HET C42 C 103 20 HET G38 C 104 23 HET A43 C 105 22 HET A43 C 106 22 HET NYM C 107 21 HET NYM C 108 21 HET C42 C 109 20 HET G38 C 110 23 HET C42 C 111 20 HET C42 D 113 17 HET G38 D 114 23 HET C42 D 115 20 HET G38 D 116 23 HET A43 D 117 22 HET A43 D 118 22 HET NYM D 119 21 HET NYM D 120 21 HET C42 D 121 20 HET G38 D 122 23 HET C42 D 123 20 HET C42 E 201 17 HET G38 E 202 23 HET C42 E 203 20 HET G38 E 204 23 HET A43 E 205 22 HET A43 E 206 22 HET NYM E 207 21 HET NYM E 208 21 HET C42 E 209 20 HET G38 E 210 23 HET C42 E 211 20 HET C42 F 213 17 HET G38 F 214 23 HET C42 F 215 20 HET G38 F 216 23 HET A43 F 217 22 HET A43 F 218 22 HET NYM F 219 21 HET NYM F 220 21 HET C42 F 221 20 HET G38 F 222 23 HET C42 F 223 20 HET NH4 A 237 1 HET NH4 A 239 1 HET CL A 255 1 HET NH4 A 226 1 HET NH4 A 228 1 HET CL A 250 1 HET NH4 B 238 1 HET NH4 B 240 1 HET CL B 256 1 HET NH4 B 225 1 HET NH4 B 227 1 HET CL B 249 1 HET NH4 C 243 1 HET NH4 C 245 1 HET CL C 259 1 HET NH4 C 244 1 HET NH4 C 248 1 HET CL C 260 1 HET NH4 D 242 1 HET NH4 D 246 1 HET CL D 258 1 HET NH4 D 241 1 HET NH4 D 247 1 HET CL D 257 1 HET NH4 E 229 1 HET NH4 E 235 1 HET CL E 251 1 HET NH4 E 230 1 HET NH4 E 234 1 HET CL E 252 1 HET NH4 F 232 1 HET NH4 F 231 1 HET NH4 F 236 1 HET CL F 254 1 HET NH4 F 233 1 HET CL F 253 1 HETNAM C42 3'-AMINO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM G38 3'-AMINO-2'-DEOXY-GUANOSINE-5'-MONOPHOSPHATE HETNAM A43 3'-AMINO DEOXYADENOSINE 5'-MONOPHOSPHATE HETNAM NYM 3'-DEOXY-3'-AMINOTHYMIDINE MONOPHOSPHATE HETNAM NH4 AMMONIUM ION HETNAM CL CHLORIDE ION HETSYN NYM PHOSPHORIC ACID MONO-[3-AMINO-5-(5-METHYL-2,4-DIOXO-3, HETSYN 2 NYM 4-DIHYDRO-2H-PYRIMIDIN-1-YL)-TETRAHYDRO-FURAN-2- HETSYN 3 NYM YLMETHYL] ESTER FORMUL 1 C42 24(C9 H15 N4 O6 P) FORMUL 1 G38 18(C10 H15 N6 O6 P) FORMUL 1 A43 12(C10 H15 N6 O5 P) FORMUL 1 NYM 12(C10 H16 N3 O7 P) FORMUL 7 NH4 24(H4 N 1+) FORMUL 9 CL 12(CL 1-) FORMUL 43 HOH *200(H2 O) LINK N C42 A 1 PA G38 A 2 1555 1555 1.62 LINK N G38 A 2 P C42 A 3 1555 1555 1.62 LINK N C42 A 3 PA G38 A 4 1555 1555 1.63 LINK N G38 A 4 P A43 A 5 1555 1555 1.62 LINK N A43 A 5 P A43 A 6 1555 1555 1.61 LINK N A43 A 6 P1 NYM A 7 1555 1555 1.62 LINK N3' NYM A 7 P1 NYM A 8 1555 1555 1.61 LINK N3' NYM A 8 P C42 A 9 1555 1555 1.64 LINK N C42 A 9 PA G38 A 10 1555 1555 1.60 LINK N G38 A 10 P C42 A 11 1555 1555 1.61 LINK N C42 A 11 P DG A 12 1555 1555 1.61 LINK N C42 B 13 PA G38 B 14 1555 1555 1.62 LINK N G38 B 14 P C42 B 15 1555 1555 1.62 LINK N C42 B 15 PA G38 B 16 1555 1555 1.62 LINK N G38 B 16 P A43 B 17 1555 1555 1.62 LINK N A43 B 17 P A43 B 18 1555 1555 1.62 LINK N A43 B 18 P1 NYM B 19 1555 1555 1.60 LINK N3' NYM B 19 P1 NYM B 20 1555 1555 1.63 LINK N3' NYM B 20 P C42 B 21 1555 1555 1.62 LINK N C42 B 21 PA G38 B 22 1555 1555 1.63 LINK N G38 B 22 P C42 B 23 1555 1555 1.61 LINK N C42 B 23 P DG B 24 1555 1555 1.61 LINK N C42 C 101 PA G38 C 102 1555 1555 1.61 LINK N G38 C 102 P C42 C 103 1555 1555 1.61 LINK N C42 C 103 PA G38 C 104 1555 1555 1.62 LINK N G38 C 104 P A43 C 105 1555 1555 1.63 LINK N A43 C 105 P A43 C 106 1555 1555 1.62 LINK N A43 C 106 P1 NYM C 107 1555 1555 1.61 LINK N3' NYM C 107 P1 NYM C 108 1555 1555 1.61 LINK N3' NYM C 108 P C42 C 109 1555 1555 1.62 LINK N C42 C 109 PA G38 C 110 1555 1555 1.62 LINK N G38 C 110 P C42 C 111 1555 1555 1.60 LINK N C42 C 111 P DG C 112 1555 1555 1.61 LINK N C42 D 113 PA G38 D 114 1555 1555 1.61 LINK N G38 D 114 P C42 D 115 1555 1555 1.61 LINK N C42 D 115 PA G38 D 116 1555 1555 1.62 LINK N G38 D 116 P A43 D 117 1555 1555 1.62 LINK N A43 D 117 P A43 D 118 1555 1555 1.62 LINK N A43 D 118 P1 NYM D 119 1555 1555 1.62 LINK N3' NYM D 119 P1 NYM D 120 1555 1555 1.62 LINK N3' NYM D 120 P C42 D 121 1555 1555 1.61 LINK N C42 D 121 PA G38 D 122 1555 1555 1.62 LINK N G38 D 122 P C42 D 123 1555 1555 1.63 LINK N C42 D 123 P DG D 124 1555 1555 1.61 LINK N C42 E 201 PA G38 E 202 1555 1555 1.62 LINK N G38 E 202 P C42 E 203 1555 1555 1.64 LINK N C42 E 203 PA G38 E 204 1555 1555 1.62 LINK N G38 E 204 P A43 E 205 1555 1555 1.62 LINK N A43 E 205 P A43 E 206 1555 1555 1.61 LINK N A43 E 206 P1 NYM E 207 1555 1555 1.62 LINK N3' NYM E 207 P1 NYM E 208 1555 1555 1.61 LINK N3' NYM E 208 P C42 E 209 1555 1555 1.61 LINK N C42 E 209 PA G38 E 210 1555 1555 1.62 LINK N G38 E 210 P C42 E 211 1555 1555 1.62 LINK N C42 E 211 P DG E 212 1555 1555 1.61 LINK N C42 F 213 PA G38 F 214 1555 1555 1.61 LINK N G38 F 214 P C42 F 215 1555 1555 1.61 LINK N C42 F 215 PA G38 F 216 1555 1555 1.61 LINK N G38 F 216 P A43 F 217 1555 1555 1.61 LINK N A43 F 217 P A43 F 218 1555 1555 1.63 LINK N A43 F 218 P1 NYM F 219 1555 1555 1.61 LINK N3' NYM F 219 P1 NYM F 220 1555 1555 1.61 LINK N3' NYM F 220 P C42 F 221 1555 1555 1.61 LINK N C42 F 221 PA G38 F 222 1555 1555 1.63 LINK N G38 F 222 P C42 F 223 1555 1555 1.62 LINK N C42 F 223 P DG F 224 1555 1555 1.62 SITE 1 AC1 2 G38 A 10 C42 B 23 SITE 1 AC2 2 CL A 250 HOH A 318 SITE 1 AC3 3 C42 A 9 NH4 A 228 G38 B 22 SITE 1 AC4 2 A43 A 6 NYM B 19 SITE 1 AC5 2 CL B 249 HOH B 317 SITE 1 AC6 3 A43 A 5 A43 B 18 NH4 B 227 SITE 1 AC7 2 A43 D 118 A43 E 205 SITE 1 AC8 2 CL E 251 HOH E 361 SITE 1 AC9 3 A43 D 117 G38 E 204 NH4 E 235 SITE 1 BC1 2 G38 D 122 C42 E 209 SITE 1 BC2 2 CL E 252 HOH E 360 SITE 1 BC3 3 C42 D 121 NYM E 208 NH4 E 234 SITE 1 BC4 2 C42 C 111 DG F 224 SITE 1 BC5 2 NYM C 107 NYM F 220 SITE 1 BC6 2 CL F 254 HOH F 362 SITE 1 BC7 3 G38 C 110 C42 F 223 NH4 F 236 SITE 1 BC8 2 CL F 253 HOH F 359 SITE 1 BC9 3 A43 C 106 NYM F 219 NH4 F 233 CRYST1 40.150 40.150 304.210 90.00 90.00 120.00 H 3 2 108 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024907 0.014380 0.000000 0.00000 SCALE2 0.000000 0.028760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003287 0.00000 MASTER 513 0 102 0 0 0 18 6 0 0 0 6 END