HEADER OXIDOREDUCTASE 22-AUG-08 2ZQX TITLE CYTOCHROME P450BSBETA COCRYSTALLIZED WITH HEPTANOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 152A1; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: P450BSBETA, FATTY ACID BETA-HYDROXYLASE; COMPND 5 EC: 1.14.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: CYPC, CYP152A1, BSU02100; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS PEROXIGENESE, OXIDOREDUCTASE, HEME PROTEIN, HEPTANOIC ACID, HEME, KEYWDS 2 IRON, METAL-BINDING, MONOOXYGENASE EXPDTA X-RAY DIFFRACTION AUTHOR O.SHOJI,T.FUJISHIRO,S.NAGANO,T.HIROSE,Y.SHIRO,Y.WATANABE REVDAT 2 01-SEP-10 2ZQX 1 JRNL REVDAT 1 25-AUG-09 2ZQX 0 JRNL AUTH O.SHOJI,T.FUJISHIRO,S.NAGANO,S.TANAKA,T.HIROSE,Y.SHIRO, JRNL AUTH 2 Y.WATANABE JRNL TITL UNDERSTANDING SUBSTRATE MISRECOGNITION OF HYDROGEN PEROXIDE JRNL TITL 2 DEPENDENT CYTOCHROME P450 FROM BACILLUS SUBTILIS. JRNL REF J.BIOL.INORG.CHEM. 2010 JRNL REFN ESSN 1432-1327 JRNL PMID 20697922 JRNL DOI 10.1007/S00775-010-0692-4 REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.57 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 60161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 3013 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.37 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.52 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 527 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.013 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 10017 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 129 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.35000 REMARK 3 B22 (A**2) : -2.35000 REMARK 3 B33 (A**2) : 4.70000 REMARK 3 B12 (A**2) : 2.69000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.00 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZQX COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 25-AUG-08. REMARK 100 THE RCSB ID CODE IS RCSB028313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61629 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.7 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZQJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5%(W/V) PEG3350, 50MM TRIS-HCL, REMARK 280 0.1M MGCL2, 20% GLYCEROL, 20MM HEPTANOIC ACID, PH8.1, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 86.11500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.71852 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 92.63967 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 86.11500 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 49.71852 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 92.63967 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 86.11500 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 49.71852 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 92.63967 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 86.11500 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 49.71852 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 92.63967 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 86.11500 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 49.71852 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 92.63967 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 86.11500 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 49.71852 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 92.63967 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 99.43704 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 185.27933 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 99.43704 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 185.27933 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 99.43704 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 185.27933 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 99.43704 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 185.27933 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 99.43704 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 185.27933 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 99.43704 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 185.27933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 ILE A 5 REMARK 465 SER A 417 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 ILE B 5 REMARK 465 SER B 417 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 GLU C 3 REMARK 465 GLN C 4 REMARK 465 ILE C 5 REMARK 465 SER C 417 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 77 -72.84 -128.02 REMARK 500 ALA A 83 -169.75 -79.28 REMARK 500 ASN A 272 -152.03 -133.73 REMARK 500 PHE A 289 -77.33 -151.38 REMARK 500 PRO A 291 -80.34 -63.12 REMARK 500 ASN A 305 8.77 55.16 REMARK 500 GLU A 341 73.18 57.24 REMARK 500 PHE A 347 -15.74 -140.24 REMARK 500 ILE A 350 53.30 -143.16 REMARK 500 PHE A 408 97.98 67.02 REMARK 500 PRO B 71 157.60 -46.30 REMARK 500 ASP B 171 8.29 -68.57 REMARK 500 ASN B 272 -153.56 -122.71 REMARK 500 PHE B 289 -78.97 -155.39 REMARK 500 PRO B 291 -75.40 -82.35 REMARK 500 LEU B 403 139.66 -170.04 REMARK 500 PHE B 408 93.25 75.67 REMARK 500 LYS C 9 44.93 -102.44 REMARK 500 TYR C 59 36.10 -92.04 REMARK 500 LYS C 76 11.06 -67.05 REMARK 500 SER C 77 -66.34 -138.91 REMARK 500 ASP C 171 4.10 -67.24 REMARK 500 GLN C 222 -164.41 -72.01 REMARK 500 PHE C 289 -86.69 -145.50 REMARK 500 PRO C 291 -75.77 -69.77 REMARK 500 ALA C 340 78.65 -45.67 REMARK 500 PHE C 347 -7.64 -143.13 REMARK 500 PRO C 389 173.46 -55.13 REMARK 500 LEU C 393 34.06 -92.27 REMARK 500 LEU C 403 145.40 -178.48 REMARK 500 PHE C 408 84.88 76.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 363 SG REMARK 620 2 HEM A 501 NA 104.8 REMARK 620 3 HEM A 501 NB 100.4 92.9 REMARK 620 4 HEM A 501 NC 83.3 171.5 88.3 REMARK 620 5 HEM A 501 ND 101.9 92.8 154.7 82.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 363 SG REMARK 620 2 HEM B 501 NA 105.3 REMARK 620 3 HEM B 501 NB 96.1 93.4 REMARK 620 4 HEM B 501 NC 79.1 175.6 85.3 REMARK 620 5 HEM B 501 ND 100.7 93.4 159.5 86.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM C 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 363 SG REMARK 620 2 HEM C 501 NA 108.6 REMARK 620 3 HEM C 501 NB 102.1 95.0 REMARK 620 4 HEM C 501 NC 81.6 169.8 82.6 REMARK 620 5 HEM C 501 ND 99.5 95.6 151.4 82.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM C 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZQJ RELATED DB: PDB REMARK 900 THE SUBSTRATE-FREE FORM OF THE SAME PROTEIN DBREF 2ZQX A 1 417 UNP O31440 CYPC_BACSU 1 417 DBREF 2ZQX B 1 417 UNP O31440 CYPC_BACSU 1 417 DBREF 2ZQX C 1 417 UNP O31440 CYPC_BACSU 1 417 SEQRES 1 A 417 MET ASN GLU GLN ILE PRO HIS ASP LYS SER LEU ASP ASN SEQRES 2 A 417 SER LEU THR LEU LEU LYS GLU GLY TYR LEU PHE ILE LYS SEQRES 3 A 417 ASN ARG THR GLU ARG TYR ASN SER ASP LEU PHE GLN ALA SEQRES 4 A 417 ARG LEU LEU GLY LYS ASN PHE ILE CYS MET THR GLY ALA SEQRES 5 A 417 GLU ALA ALA LYS VAL PHE TYR ASP THR ASP ARG PHE GLN SEQRES 6 A 417 ARG GLN ASN ALA LEU PRO LYS ARG VAL GLN LYS SER LEU SEQRES 7 A 417 PHE GLY VAL ASN ALA ILE GLN GLY MET ASP GLY SER ALA SEQRES 8 A 417 HIS ILE HIS ARG LYS MET LEU PHE LEU SER LEU MET THR SEQRES 9 A 417 PRO PRO HIS GLN LYS ARG LEU ALA GLU LEU MET THR GLU SEQRES 10 A 417 GLU TRP LYS ALA ALA VAL THR ARG TRP GLU LYS ALA ASP SEQRES 11 A 417 GLU VAL VAL LEU PHE GLU GLU ALA LYS GLU ILE LEU CYS SEQRES 12 A 417 ARG VAL ALA CYS TYR TRP ALA GLY VAL PRO LEU LYS GLU SEQRES 13 A 417 THR GLU VAL LYS GLU ARG ALA ASP ASP PHE ILE ASP MET SEQRES 14 A 417 VAL ASP ALA PHE GLY ALA VAL GLY PRO ARG HIS TRP LYS SEQRES 15 A 417 GLY ARG ARG ALA ARG PRO ARG ALA GLU GLU TRP ILE GLU SEQRES 16 A 417 VAL MET ILE GLU ASP ALA ARG ALA GLY LEU LEU LYS THR SEQRES 17 A 417 THR SER GLY THR ALA LEU HIS GLU MET ALA PHE HIS THR SEQRES 18 A 417 GLN GLU ASP GLY SER GLN LEU ASP SER ARG MET ALA ALA SEQRES 19 A 417 ILE GLU LEU ILE ASN VAL LEU ARG PRO ILE VAL ALA ILE SEQRES 20 A 417 SER TYR PHE LEU VAL PHE SER ALA LEU ALA LEU HIS GLU SEQRES 21 A 417 HIS PRO LYS TYR LYS GLU TRP LEU ARG SER GLY ASN SER SEQRES 22 A 417 ARG GLU ARG GLU MET PHE VAL GLN GLU VAL ARG ARG TYR SEQRES 23 A 417 TYR PRO PHE GLY PRO PHE LEU GLY ALA LEU VAL LYS LYS SEQRES 24 A 417 ASP PHE VAL TRP ASN ASN CYS GLU PHE LYS LYS GLY THR SEQRES 25 A 417 SER VAL LEU LEU ASP LEU TYR GLY THR ASN HIS ASP PRO SEQRES 26 A 417 ARG LEU TRP ASP HIS PRO ASP GLU PHE ARG PRO GLU ARG SEQRES 27 A 417 PHE ALA GLU ARG GLU GLU ASN LEU PHE ASP MET ILE PRO SEQRES 28 A 417 GLN GLY GLY GLY HIS ALA GLU LYS GLY HIS ARG CYS PRO SEQRES 29 A 417 GLY GLU GLY ILE THR ILE GLU VAL MET LYS ALA SER LEU SEQRES 30 A 417 ASP PHE LEU VAL HIS GLN ILE GLU TYR ASP VAL PRO GLU SEQRES 31 A 417 GLN SER LEU HIS TYR SER LEU ALA ARG MET PRO SER LEU SEQRES 32 A 417 PRO GLU SER GLY PHE VAL MET SER GLY ILE ARG ARG LYS SEQRES 33 A 417 SER SEQRES 1 B 417 MET ASN GLU GLN ILE PRO HIS ASP LYS SER LEU ASP ASN SEQRES 2 B 417 SER LEU THR LEU LEU LYS GLU GLY TYR LEU PHE ILE LYS SEQRES 3 B 417 ASN ARG THR GLU ARG TYR ASN SER ASP LEU PHE GLN ALA SEQRES 4 B 417 ARG LEU LEU GLY LYS ASN PHE ILE CYS MET THR GLY ALA SEQRES 5 B 417 GLU ALA ALA LYS VAL PHE TYR ASP THR ASP ARG PHE GLN SEQRES 6 B 417 ARG GLN ASN ALA LEU PRO LYS ARG VAL GLN LYS SER LEU SEQRES 7 B 417 PHE GLY VAL ASN ALA ILE GLN GLY MET ASP GLY SER ALA SEQRES 8 B 417 HIS ILE HIS ARG LYS MET LEU PHE LEU SER LEU MET THR SEQRES 9 B 417 PRO PRO HIS GLN LYS ARG LEU ALA GLU LEU MET THR GLU SEQRES 10 B 417 GLU TRP LYS ALA ALA VAL THR ARG TRP GLU LYS ALA ASP SEQRES 11 B 417 GLU VAL VAL LEU PHE GLU GLU ALA LYS GLU ILE LEU CYS SEQRES 12 B 417 ARG VAL ALA CYS TYR TRP ALA GLY VAL PRO LEU LYS GLU SEQRES 13 B 417 THR GLU VAL LYS GLU ARG ALA ASP ASP PHE ILE ASP MET SEQRES 14 B 417 VAL ASP ALA PHE GLY ALA VAL GLY PRO ARG HIS TRP LYS SEQRES 15 B 417 GLY ARG ARG ALA ARG PRO ARG ALA GLU GLU TRP ILE GLU SEQRES 16 B 417 VAL MET ILE GLU ASP ALA ARG ALA GLY LEU LEU LYS THR SEQRES 17 B 417 THR SER GLY THR ALA LEU HIS GLU MET ALA PHE HIS THR SEQRES 18 B 417 GLN GLU ASP GLY SER GLN LEU ASP SER ARG MET ALA ALA SEQRES 19 B 417 ILE GLU LEU ILE ASN VAL LEU ARG PRO ILE VAL ALA ILE SEQRES 20 B 417 SER TYR PHE LEU VAL PHE SER ALA LEU ALA LEU HIS GLU SEQRES 21 B 417 HIS PRO LYS TYR LYS GLU TRP LEU ARG SER GLY ASN SER SEQRES 22 B 417 ARG GLU ARG GLU MET PHE VAL GLN GLU VAL ARG ARG TYR SEQRES 23 B 417 TYR PRO PHE GLY PRO PHE LEU GLY ALA LEU VAL LYS LYS SEQRES 24 B 417 ASP PHE VAL TRP ASN ASN CYS GLU PHE LYS LYS GLY THR SEQRES 25 B 417 SER VAL LEU LEU ASP LEU TYR GLY THR ASN HIS ASP PRO SEQRES 26 B 417 ARG LEU TRP ASP HIS PRO ASP GLU PHE ARG PRO GLU ARG SEQRES 27 B 417 PHE ALA GLU ARG GLU GLU ASN LEU PHE ASP MET ILE PRO SEQRES 28 B 417 GLN GLY GLY GLY HIS ALA GLU LYS GLY HIS ARG CYS PRO SEQRES 29 B 417 GLY GLU GLY ILE THR ILE GLU VAL MET LYS ALA SER LEU SEQRES 30 B 417 ASP PHE LEU VAL HIS GLN ILE GLU TYR ASP VAL PRO GLU SEQRES 31 B 417 GLN SER LEU HIS TYR SER LEU ALA ARG MET PRO SER LEU SEQRES 32 B 417 PRO GLU SER GLY PHE VAL MET SER GLY ILE ARG ARG LYS SEQRES 33 B 417 SER SEQRES 1 C 417 MET ASN GLU GLN ILE PRO HIS ASP LYS SER LEU ASP ASN SEQRES 2 C 417 SER LEU THR LEU LEU LYS GLU GLY TYR LEU PHE ILE LYS SEQRES 3 C 417 ASN ARG THR GLU ARG TYR ASN SER ASP LEU PHE GLN ALA SEQRES 4 C 417 ARG LEU LEU GLY LYS ASN PHE ILE CYS MET THR GLY ALA SEQRES 5 C 417 GLU ALA ALA LYS VAL PHE TYR ASP THR ASP ARG PHE GLN SEQRES 6 C 417 ARG GLN ASN ALA LEU PRO LYS ARG VAL GLN LYS SER LEU SEQRES 7 C 417 PHE GLY VAL ASN ALA ILE GLN GLY MET ASP GLY SER ALA SEQRES 8 C 417 HIS ILE HIS ARG LYS MET LEU PHE LEU SER LEU MET THR SEQRES 9 C 417 PRO PRO HIS GLN LYS ARG LEU ALA GLU LEU MET THR GLU SEQRES 10 C 417 GLU TRP LYS ALA ALA VAL THR ARG TRP GLU LYS ALA ASP SEQRES 11 C 417 GLU VAL VAL LEU PHE GLU GLU ALA LYS GLU ILE LEU CYS SEQRES 12 C 417 ARG VAL ALA CYS TYR TRP ALA GLY VAL PRO LEU LYS GLU SEQRES 13 C 417 THR GLU VAL LYS GLU ARG ALA ASP ASP PHE ILE ASP MET SEQRES 14 C 417 VAL ASP ALA PHE GLY ALA VAL GLY PRO ARG HIS TRP LYS SEQRES 15 C 417 GLY ARG ARG ALA ARG PRO ARG ALA GLU GLU TRP ILE GLU SEQRES 16 C 417 VAL MET ILE GLU ASP ALA ARG ALA GLY LEU LEU LYS THR SEQRES 17 C 417 THR SER GLY THR ALA LEU HIS GLU MET ALA PHE HIS THR SEQRES 18 C 417 GLN GLU ASP GLY SER GLN LEU ASP SER ARG MET ALA ALA SEQRES 19 C 417 ILE GLU LEU ILE ASN VAL LEU ARG PRO ILE VAL ALA ILE SEQRES 20 C 417 SER TYR PHE LEU VAL PHE SER ALA LEU ALA LEU HIS GLU SEQRES 21 C 417 HIS PRO LYS TYR LYS GLU TRP LEU ARG SER GLY ASN SER SEQRES 22 C 417 ARG GLU ARG GLU MET PHE VAL GLN GLU VAL ARG ARG TYR SEQRES 23 C 417 TYR PRO PHE GLY PRO PHE LEU GLY ALA LEU VAL LYS LYS SEQRES 24 C 417 ASP PHE VAL TRP ASN ASN CYS GLU PHE LYS LYS GLY THR SEQRES 25 C 417 SER VAL LEU LEU ASP LEU TYR GLY THR ASN HIS ASP PRO SEQRES 26 C 417 ARG LEU TRP ASP HIS PRO ASP GLU PHE ARG PRO GLU ARG SEQRES 27 C 417 PHE ALA GLU ARG GLU GLU ASN LEU PHE ASP MET ILE PRO SEQRES 28 C 417 GLN GLY GLY GLY HIS ALA GLU LYS GLY HIS ARG CYS PRO SEQRES 29 C 417 GLY GLU GLY ILE THR ILE GLU VAL MET LYS ALA SER LEU SEQRES 30 C 417 ASP PHE LEU VAL HIS GLN ILE GLU TYR ASP VAL PRO GLU SEQRES 31 C 417 GLN SER LEU HIS TYR SER LEU ALA ARG MET PRO SER LEU SEQRES 32 C 417 PRO GLU SER GLY PHE VAL MET SER GLY ILE ARG ARG LYS SEQRES 33 C 417 SER HET HEM A 501 43 HET HEM B 501 43 HET HEM C 501 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 4 HEM 3(C34 H32 FE N4 O4) FORMUL 7 HOH *181(H2 O) HELIX 1 1 ASP A 12 GLY A 21 1 10 HELIX 2 2 LEU A 23 TYR A 32 1 10 HELIX 3 3 GLY A 51 TYR A 59 1 9 HELIX 4 4 PRO A 71 LYS A 76 1 6 HELIX 5 5 ALA A 83 MET A 87 5 5 HELIX 6 6 ASP A 88 LEU A 102 1 15 HELIX 7 7 THR A 104 ALA A 129 1 26 HELIX 8 8 LEU A 134 GLY A 151 1 18 HELIX 9 9 LYS A 155 THR A 157 5 3 HELIX 10 10 GLU A 158 ASP A 171 1 14 HELIX 11 11 GLY A 177 ALA A 203 1 27 HELIX 12 12 THR A 212 HIS A 220 1 9 HELIX 13 13 ASP A 229 ILE A 247 1 19 HELIX 14 14 ILE A 247 HIS A 261 1 15 HELIX 15 15 PRO A 262 SER A 270 1 9 HELIX 16 16 ASN A 272 TYR A 287 1 16 HELIX 17 17 LEU A 318 HIS A 323 1 6 HELIX 18 18 ARG A 335 ALA A 340 5 6 HELIX 19 19 GLY A 365 GLN A 383 1 19 HELIX 20 20 ASP B 12 GLY B 21 1 10 HELIX 21 21 LEU B 23 ASN B 33 1 11 HELIX 22 22 GLY B 51 TYR B 59 1 9 HELIX 23 23 PRO B 71 LYS B 76 1 6 HELIX 24 24 ALA B 83 MET B 87 5 5 HELIX 25 25 ASP B 88 LEU B 102 1 15 HELIX 26 26 THR B 104 GLU B 127 1 24 HELIX 27 27 LEU B 134 GLY B 151 1 18 HELIX 28 28 GLU B 158 ASP B 171 1 14 HELIX 29 29 GLY B 177 ALA B 203 1 27 HELIX 30 30 THR B 212 PHE B 219 1 8 HELIX 31 31 ASP B 229 ILE B 247 1 19 HELIX 32 32 ILE B 247 HIS B 261 1 15 HELIX 33 33 PRO B 262 GLY B 271 1 10 HELIX 34 34 ASN B 272 TYR B 287 1 16 HELIX 35 35 LEU B 318 ASN B 322 1 5 HELIX 36 36 ARG B 335 ALA B 340 5 6 HELIX 37 37 GLY B 365 GLN B 383 1 19 HELIX 38 38 ASP C 12 GLY C 21 1 10 HELIX 39 39 TYR C 22 GLU C 30 1 9 HELIX 40 40 THR C 50 TYR C 59 1 10 HELIX 41 41 PRO C 71 LYS C 76 1 6 HELIX 42 42 ALA C 83 MET C 87 5 5 HELIX 43 43 ASP C 88 SER C 101 1 14 HELIX 44 44 THR C 104 GLU C 127 1 24 HELIX 45 45 LEU C 134 GLY C 151 1 18 HELIX 46 46 GLU C 158 ASP C 171 1 14 HELIX 47 47 GLY C 177 ALA C 203 1 27 HELIX 48 48 THR C 212 HIS C 220 1 9 HELIX 49 49 ASP C 229 ALA C 246 1 18 HELIX 50 50 ALA C 246 HIS C 261 1 16 HELIX 51 51 PRO C 262 SER C 270 1 9 HELIX 52 52 ASN C 272 TYR C 287 1 16 HELIX 53 53 LEU C 318 HIS C 323 1 6 HELIX 54 54 ARG C 335 ALA C 340 5 6 HELIX 55 55 GLY C 365 HIS C 382 1 18 SHEET 1 A 5 LEU A 36 LEU A 41 0 SHEET 2 A 5 LYS A 44 THR A 50 -1 O PHE A 46 N ALA A 39 SHEET 3 A 5 SER A 313 ASP A 317 1 O ASP A 317 N MET A 49 SHEET 4 A 5 PHE A 292 VAL A 297 -1 N ALA A 295 O VAL A 314 SHEET 5 A 5 PHE A 64 GLN A 65 -1 N GLN A 65 O LEU A 296 SHEET 1 B 3 GLU A 131 VAL A 133 0 SHEET 2 B 3 VAL A 409 ARG A 415 -1 O MET A 410 N VAL A 132 SHEET 3 B 3 ILE A 384 ASP A 387 -1 N ASP A 387 O SER A 411 SHEET 1 C 2 PHE A 301 TRP A 303 0 SHEET 2 C 2 CYS A 306 PHE A 308 -1 O PHE A 308 N PHE A 301 SHEET 1 D 5 LEU B 36 LEU B 41 0 SHEET 2 D 5 LYS B 44 THR B 50 -1 O PHE B 46 N ALA B 39 SHEET 3 D 5 SER B 313 ASP B 317 1 O ASP B 317 N MET B 49 SHEET 4 D 5 PHE B 292 VAL B 297 -1 N ALA B 295 O VAL B 314 SHEET 5 D 5 PHE B 64 GLN B 65 -1 N GLN B 65 O LEU B 296 SHEET 1 E 3 GLU B 131 VAL B 133 0 SHEET 2 E 3 VAL B 409 ARG B 415 -1 O MET B 410 N VAL B 132 SHEET 3 E 3 ILE B 384 ASP B 387 -1 N ASP B 387 O SER B 411 SHEET 1 F 2 PHE B 301 TRP B 303 0 SHEET 2 F 2 CYS B 306 PHE B 308 -1 O PHE B 308 N PHE B 301 SHEET 1 G 5 LEU C 36 LEU C 41 0 SHEET 2 G 5 LYS C 44 MET C 49 -1 O CYS C 48 N PHE C 37 SHEET 3 G 5 SER C 313 ASP C 317 1 O ASP C 317 N MET C 49 SHEET 4 G 5 PHE C 292 VAL C 297 -1 N LEU C 293 O LEU C 316 SHEET 5 G 5 PHE C 64 GLN C 65 -1 N GLN C 65 O LEU C 296 SHEET 1 H 3 GLU C 131 VAL C 133 0 SHEET 2 H 3 VAL C 409 ARG C 415 -1 O MET C 410 N VAL C 132 SHEET 3 H 3 ILE C 384 ASP C 387 -1 N ASP C 387 O SER C 411 SHEET 1 I 2 PHE C 301 TRP C 303 0 SHEET 2 I 2 CYS C 306 PHE C 308 -1 O CYS C 306 N TRP C 303 LINK SG CYS A 363 FE HEM A 501 1555 1555 2.22 LINK SG CYS B 363 FE HEM B 501 1555 1555 2.25 LINK SG CYS C 363 FE HEM C 501 1555 1555 2.25 CISPEP 1 MET A 400 PRO A 401 0 -0.21 CISPEP 2 MET B 400 PRO B 401 0 -0.23 CISPEP 3 MET C 400 PRO C 401 0 0.25 SITE 1 AC1 20 TYR A 59 ARG A 66 HIS A 92 LYS A 96 SITE 2 AC1 20 PHE A 99 MET A 103 PRO A 243 ILE A 244 SITE 3 AC1 20 ALA A 246 ILE A 247 PHE A 289 LEU A 293 SITE 4 AC1 20 LEU A 318 GLN A 352 HIS A 361 CYS A 363 SITE 5 AC1 20 PRO A 364 GLY A 365 ILE A 368 THR A 369 SITE 1 AC2 22 TYR B 59 ARG B 66 GLN B 85 HIS B 92 SITE 2 AC2 22 LYS B 96 PHE B 99 MET B 103 PRO B 243 SITE 3 AC2 22 ILE B 244 ALA B 246 ILE B 247 PHE B 289 SITE 4 AC2 22 LEU B 293 LEU B 318 GLN B 352 HIS B 361 SITE 5 AC2 22 ARG B 362 CYS B 363 PRO B 364 GLY B 365 SITE 6 AC2 22 ILE B 368 THR B 369 SITE 1 AC3 19 TYR C 59 ARG C 66 ILE C 84 HIS C 92 SITE 2 AC3 19 LYS C 96 PHE C 99 MET C 103 PRO C 243 SITE 3 AC3 19 ILE C 244 ALA C 246 ILE C 247 PHE C 289 SITE 4 AC3 19 LEU C 293 GLN C 352 HIS C 361 ARG C 362 SITE 5 AC3 19 CYS C 363 PRO C 364 THR C 369 CRYST1 172.230 172.230 277.919 90.00 90.00 120.00 H 3 2 54 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005806 0.003352 0.000000 0.00000 SCALE2 0.000000 0.006704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003598 0.00000 MASTER 403 0 3 55 30 0 16 6 0 0 0 99 END