HEADER STRUCTURAL PROTEIN 30-JAN-08 2ZGY TITLE PARM WITH GDP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMID SEGREGATION PROTEIN PARM; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN STBA, PARA LOCUS 36 KDA PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMD137 KEYWDS PARM, PLASMID, PLASMID PARTITION, STRUCTURAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.POPP,A.NARITA,T.ODA,T.FUJISAWA,H.MATSUO,Y.NITANAI,M.IWASA, AUTHOR 2 K.MAEDA,H.ONISHI,Y.MAEDA REVDAT 3 24-FEB-09 2ZGY 1 VERSN REVDAT 2 22-APR-08 2ZGY 1 JRNL REVDAT 1 12-FEB-08 2ZGY 0 JRNL AUTH D.POPP,A.NARITA,T.ODA,T.FUJISAWA,H.MATSUO, JRNL AUTH 2 Y.NITANAI,M.IWASA,K.MAEDA,H.ONISHI,Y.MAEDA JRNL TITL MOLECULAR STRUCTURE OF THE PARM POLYMER AND THE JRNL TITL 2 MECHANISM LEADING TO ITS NUCLEOTIDE-DRIVEN DYNAMIC JRNL TITL 3 INSTABILITY JRNL REF EMBO J. V. 27 570 2008 JRNL REFN ISSN 0261-4189 JRNL PMID 18188150 JRNL DOI 10.1038/SJ.EMBOJ.7601978 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1665720.980 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 62559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3153 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 9171 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 486 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5034 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 522 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.27000 REMARK 3 B22 (A**2) : 3.27000 REMARK 3 B33 (A**2) : -6.54000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 1.80 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.98 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.230 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.240 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.080 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.360 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 64.18 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : GDP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : GDP.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ZGY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-JAN-08. REMARK 100 THE RCSB ID CODE IS RCSB027958. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62671 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 65.5200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.32600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB CODE 1MWM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.92 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% (W/W) PEG 8000, 0.4M SODIUM REMARK 280 CHLORID, 0.4M MAGNESIUM ACETATE, 0.1M SODIUM CACODYLATE, PH REMARK 280 6.2, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 100.51050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 50.25525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 150.76575 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE MOLECULE HAS MONOMERIC STATE AND FILAMENTOUS REMARK 300 OLIGOMELIC STATE. PRECIOUS COORDINATES FOR A COMPLETE MULTIMER REMARK 300 REPRESENTING THE KNOWN BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION REMARK 300 STATE OF THE MOLECULE HAS NOT YET BEEN KNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE B 239 N ASP B 241 2.14 REMARK 500 O ILE A 239 N ASP A 241 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 18 -159.46 -82.30 REMARK 500 ARG A 34 45.83 -88.22 REMARK 500 ALA A 64 -165.48 -49.01 REMARK 500 VAL A 65 57.65 35.81 REMARK 500 THR A 67 -129.13 -118.63 REMARK 500 LYS A 141 -103.86 -93.93 REMARK 500 SER A 149 -67.04 71.93 REMARK 500 ASN A 240 61.15 -24.93 REMARK 500 ASP A 241 -48.70 61.23 REMARK 500 GLU A 242 -171.53 -64.76 REMARK 500 GLN A 295 64.72 -104.36 REMARK 500 ASN A 306 35.03 -145.54 REMARK 500 GLU B 18 -134.86 -90.76 REMARK 500 ARG B 34 40.92 -83.59 REMARK 500 VAL B 65 56.69 78.60 REMARK 500 VAL B 66 58.26 -92.79 REMARK 500 THR B 67 -100.01 -110.23 REMARK 500 LYS B 141 -99.18 -99.97 REMARK 500 SER B 149 -64.39 69.55 REMARK 500 ASN B 240 62.12 -26.98 REMARK 500 ASP B 241 -18.69 52.04 REMARK 500 GLU B 242 -142.78 -79.78 REMARK 500 ASN B 243 54.24 -154.85 REMARK 500 GLN B 295 64.80 -102.58 REMARK 500 ASN B 306 37.78 -147.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 220 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 322 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 GLN A 73 OE1 113.3 REMARK 620 3 THR A 101 O 93.1 88.6 REMARK 620 4 HOH A 329 O 152.4 87.4 106.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 322 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 7 OD1 REMARK 620 2 GLN B 73 OE1 113.6 REMARK 620 3 THR B 101 O 91.9 89.1 REMARK 620 4 HOH B 329 O 154.4 85.3 106.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 321 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP A 323 O1B REMARK 620 2 HOH A 326 O 81.0 REMARK 620 3 HOH A 325 O 88.8 91.5 REMARK 620 4 HOH A 327 O 93.8 91.6 176.2 REMARK 620 5 HOH A 324 O 164.7 83.7 92.1 86.1 REMARK 620 6 HOH A 328 O 101.5 174.0 93.9 82.9 93.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 321 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GDP B 323 O1B REMARK 620 2 HOH B 326 O 81.1 REMARK 620 3 HOH B 327 O 91.3 90.0 REMARK 620 4 HOH B 325 O 91.9 93.3 175.7 REMARK 620 5 HOH B 324 O 165.5 84.9 84.7 92.9 REMARK 620 6 HOH B 328 O 100.6 169.6 79.7 96.9 92.4 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 321 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 322 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 321 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 322 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 323 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 323 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZGZ RELATED DB: PDB DBREF 2ZGY A 1 320 UNP P11904 PARM_ECOLX 1 320 DBREF 2ZGY B 1 320 UNP P11904 PARM_ECOLX 1 320 SEQRES 1 A 320 MET LEU VAL PHE ILE ASP ASP GLY SER THR ASN ILE LYS SEQRES 2 A 320 LEU GLN TRP GLN GLU SER ASP GLY THR ILE LYS GLN HIS SEQRES 3 A 320 ILE SER PRO ASN SER PHE LYS ARG GLU TRP ALA VAL SER SEQRES 4 A 320 PHE GLY ASP LYS LYS VAL PHE ASN TYR THR LEU ASN GLY SEQRES 5 A 320 GLU GLN TYR SER PHE ASP PRO ILE SER PRO ASP ALA VAL SEQRES 6 A 320 VAL THR THR ASN ILE ALA TRP GLN TYR SER ASP VAL ASN SEQRES 7 A 320 VAL VAL ALA VAL HIS HIS ALA LEU LEU THR SER GLY LEU SEQRES 8 A 320 PRO VAL SER GLU VAL ASP ILE VAL CYS THR LEU PRO LEU SEQRES 9 A 320 THR GLU TYR TYR ASP ARG ASN ASN GLN PRO ASN THR GLU SEQRES 10 A 320 ASN ILE GLU ARG LYS LYS ALA ASN PHE ARG LYS LYS ILE SEQRES 11 A 320 THR LEU ASN GLY GLY ASP THR PHE THR ILE LYS ASP VAL SEQRES 12 A 320 LYS VAL MET PRO GLU SER ILE PRO ALA GLY TYR GLU VAL SEQRES 13 A 320 LEU GLN GLU LEU ASP GLU LEU ASP SER LEU LEU ILE ILE SEQRES 14 A 320 ASP LEU GLY GLY THR THR LEU ASP ILE SER GLN VAL MET SEQRES 15 A 320 GLY LYS LEU SER GLY ILE SER LYS ILE TYR GLY ASP SER SEQRES 16 A 320 SER LEU GLY VAL SER LEU VAL THR SER ALA VAL LYS ASP SEQRES 17 A 320 ALA LEU SER LEU ALA ARG THR LYS GLY SER SER TYR LEU SEQRES 18 A 320 ALA ASP ASP ILE ILE ILE HIS ARG LYS ASP ASN ASN TYR SEQRES 19 A 320 LEU LYS GLN ARG ILE ASN ASP GLU ASN LYS ILE SER ILE SEQRES 20 A 320 VAL THR GLU ALA MET ASN GLU ALA LEU ARG LYS LEU GLU SEQRES 21 A 320 GLN ARG VAL LEU ASN THR LEU ASN GLU PHE SER GLY TYR SEQRES 22 A 320 THR HIS VAL MET VAL ILE GLY GLY GLY ALA GLU LEU ILE SEQRES 23 A 320 CYS ASP ALA VAL LYS LYS HIS THR GLN ILE ARG ASP GLU SEQRES 24 A 320 ARG PHE PHE LYS THR ASN ASN SER GLN TYR ASP LEU VAL SEQRES 25 A 320 ASN GLY MET TYR LEU ILE GLY ASN SEQRES 1 B 320 MET LEU VAL PHE ILE ASP ASP GLY SER THR ASN ILE LYS SEQRES 2 B 320 LEU GLN TRP GLN GLU SER ASP GLY THR ILE LYS GLN HIS SEQRES 3 B 320 ILE SER PRO ASN SER PHE LYS ARG GLU TRP ALA VAL SER SEQRES 4 B 320 PHE GLY ASP LYS LYS VAL PHE ASN TYR THR LEU ASN GLY SEQRES 5 B 320 GLU GLN TYR SER PHE ASP PRO ILE SER PRO ASP ALA VAL SEQRES 6 B 320 VAL THR THR ASN ILE ALA TRP GLN TYR SER ASP VAL ASN SEQRES 7 B 320 VAL VAL ALA VAL HIS HIS ALA LEU LEU THR SER GLY LEU SEQRES 8 B 320 PRO VAL SER GLU VAL ASP ILE VAL CYS THR LEU PRO LEU SEQRES 9 B 320 THR GLU TYR TYR ASP ARG ASN ASN GLN PRO ASN THR GLU SEQRES 10 B 320 ASN ILE GLU ARG LYS LYS ALA ASN PHE ARG LYS LYS ILE SEQRES 11 B 320 THR LEU ASN GLY GLY ASP THR PHE THR ILE LYS ASP VAL SEQRES 12 B 320 LYS VAL MET PRO GLU SER ILE PRO ALA GLY TYR GLU VAL SEQRES 13 B 320 LEU GLN GLU LEU ASP GLU LEU ASP SER LEU LEU ILE ILE SEQRES 14 B 320 ASP LEU GLY GLY THR THR LEU ASP ILE SER GLN VAL MET SEQRES 15 B 320 GLY LYS LEU SER GLY ILE SER LYS ILE TYR GLY ASP SER SEQRES 16 B 320 SER LEU GLY VAL SER LEU VAL THR SER ALA VAL LYS ASP SEQRES 17 B 320 ALA LEU SER LEU ALA ARG THR LYS GLY SER SER TYR LEU SEQRES 18 B 320 ALA ASP ASP ILE ILE ILE HIS ARG LYS ASP ASN ASN TYR SEQRES 19 B 320 LEU LYS GLN ARG ILE ASN ASP GLU ASN LYS ILE SER ILE SEQRES 20 B 320 VAL THR GLU ALA MET ASN GLU ALA LEU ARG LYS LEU GLU SEQRES 21 B 320 GLN ARG VAL LEU ASN THR LEU ASN GLU PHE SER GLY TYR SEQRES 22 B 320 THR HIS VAL MET VAL ILE GLY GLY GLY ALA GLU LEU ILE SEQRES 23 B 320 CYS ASP ALA VAL LYS LYS HIS THR GLN ILE ARG ASP GLU SEQRES 24 B 320 ARG PHE PHE LYS THR ASN ASN SER GLN TYR ASP LEU VAL SEQRES 25 B 320 ASN GLY MET TYR LEU ILE GLY ASN HET MG A 321 1 HET MG A 322 1 HET MG B 321 1 HET MG B 322 1 HET GDP A 323 28 HET GDP B 323 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 3 MG 4(MG 2+) FORMUL 7 GDP 2(C10 H15 N5 O11 P2) FORMUL 9 HOH *522(H2 O) HELIX 1 1 ILE A 70 TYR A 74 5 5 HELIX 2 2 SER A 75 GLY A 90 1 16 HELIX 3 3 PRO A 103 TYR A 108 1 6 HELIX 4 4 ASN A 115 PHE A 126 1 12 HELIX 5 5 SER A 149 LEU A 160 1 12 HELIX 6 6 LYS A 184 SER A 186 5 3 HELIX 7 7 VAL A 199 LEU A 210 1 12 HELIX 8 8 THR A 215 GLY A 217 5 3 HELIX 9 9 SER A 218 HIS A 228 1 11 HELIX 10 10 ASP A 231 ILE A 239 1 9 HELIX 11 11 LYS A 244 ASN A 268 1 25 HELIX 12 12 GLY A 282 HIS A 293 1 12 HELIX 13 13 ARG A 297 GLU A 299 5 3 HELIX 14 14 ASN A 306 GLN A 308 5 3 HELIX 15 15 TYR A 309 ASN A 320 1 12 HELIX 16 16 ILE B 70 TYR B 74 5 5 HELIX 17 17 SER B 75 GLY B 90 1 16 HELIX 18 18 PRO B 103 TYR B 108 1 6 HELIX 19 19 ASN B 115 PHE B 126 1 12 HELIX 20 20 SER B 149 LEU B 160 1 12 HELIX 21 21 LYS B 184 SER B 186 5 3 HELIX 22 22 VAL B 199 LEU B 210 1 12 HELIX 23 23 THR B 215 GLY B 217 5 3 HELIX 24 24 SER B 218 HIS B 228 1 11 HELIX 25 25 ASP B 231 ILE B 239 1 9 HELIX 26 26 LYS B 244 ASN B 268 1 25 HELIX 27 27 GLY B 282 HIS B 293 1 12 HELIX 28 28 ARG B 297 GLU B 299 5 3 HELIX 29 29 ASN B 306 GLN B 308 5 3 HELIX 30 30 TYR B 309 ASN B 320 1 12 SHEET 1 A 5 ILE A 23 PRO A 29 0 SHEET 2 A 5 ASN A 11 GLN A 17 -1 N LEU A 14 O HIS A 26 SHEET 3 A 5 LEU A 2 ASP A 7 -1 N PHE A 4 O GLN A 15 SHEET 4 A 5 GLU A 95 LEU A 102 1 O VAL A 99 N ILE A 5 SHEET 5 A 5 THR A 139 PRO A 147 1 O ASP A 142 N ILE A 98 SHEET 1 B 4 PHE A 32 LYS A 33 0 SHEET 2 B 4 GLU A 53 PHE A 57 -1 O SER A 56 N LYS A 33 SHEET 3 B 4 ASN A 47 LEU A 50 -1 N TYR A 48 O TYR A 55 SHEET 4 B 4 ILE A 130 LEU A 132 -1 O THR A 131 N THR A 49 SHEET 1 C 5 ILE A 188 ASP A 194 0 SHEET 2 C 5 LEU A 176 MET A 182 -1 N ILE A 178 O TYR A 192 SHEET 3 C 5 SER A 165 LEU A 171 -1 N ILE A 168 O SER A 179 SHEET 4 C 5 HIS A 275 ILE A 279 1 O ILE A 279 N ILE A 169 SHEET 5 C 5 PHE A 301 PHE A 302 1 O PHE A 302 N VAL A 276 SHEET 1 D 5 ILE B 23 PRO B 29 0 SHEET 2 D 5 ASN B 11 GLN B 17 -1 N LEU B 14 O HIS B 26 SHEET 3 D 5 LEU B 2 ASP B 7 -1 N PHE B 4 O GLN B 15 SHEET 4 D 5 GLU B 95 LEU B 102 1 O VAL B 99 N ILE B 5 SHEET 5 D 5 THR B 139 PRO B 147 1 O ASP B 142 N ILE B 98 SHEET 1 E 4 PHE B 32 LYS B 33 0 SHEET 2 E 4 GLU B 53 PHE B 57 -1 O SER B 56 N LYS B 33 SHEET 3 E 4 ASN B 47 LEU B 50 -1 N TYR B 48 O TYR B 55 SHEET 4 E 4 ILE B 130 LEU B 132 -1 O THR B 131 N THR B 49 SHEET 1 F 5 ILE B 188 ASP B 194 0 SHEET 2 F 5 LEU B 176 MET B 182 -1 N ILE B 178 O TYR B 192 SHEET 3 F 5 SER B 165 LEU B 171 -1 N ILE B 168 O SER B 179 SHEET 4 F 5 HIS B 275 ILE B 279 1 O ILE B 279 N ILE B 169 SHEET 5 F 5 PHE B 301 PHE B 302 1 O PHE B 302 N VAL B 276 LINK OD1 ASP A 7 MG MG A 322 1555 1555 2.38 LINK OE1 GLN A 73 MG MG A 322 1555 1555 2.38 LINK O THR A 101 MG MG A 322 1555 1555 2.37 LINK OD1 ASP B 7 MG MG B 322 1555 1555 2.41 LINK OE1 GLN B 73 MG MG B 322 1555 1555 2.44 LINK O THR B 101 MG MG B 322 1555 1555 2.39 LINK MG MG A 321 O1B GDP A 323 1555 1555 2.12 LINK MG MG B 321 O1B GDP B 323 1555 1555 2.12 LINK MG MG A 321 O HOH A 326 1555 1555 2.18 LINK MG MG A 321 O HOH A 325 1555 1555 2.11 LINK MG MG A 321 O HOH A 327 1555 1555 2.16 LINK MG MG A 321 O HOH A 324 1555 1555 2.17 LINK MG MG A 321 O HOH A 328 1555 1555 2.16 LINK MG MG A 322 O HOH A 329 1555 1555 2.32 LINK MG MG B 321 O HOH B 326 1555 1555 2.22 LINK MG MG B 321 O HOH B 327 1555 1555 2.18 LINK MG MG B 321 O HOH B 325 1555 1555 2.14 LINK MG MG B 321 O HOH B 324 1555 1555 2.18 LINK MG MG B 321 O HOH B 328 1555 1555 2.19 LINK MG MG B 322 O HOH B 329 1555 1555 2.40 SITE 1 AC3 6 GDP A 323 HOH A 324 HOH A 325 HOH A 326 SITE 2 AC3 6 HOH A 327 HOH A 328 SITE 1 AC4 4 ASP A 7 GLN A 73 THR A 101 HOH A 329 SITE 1 AC5 6 GDP B 323 HOH B 324 HOH B 325 HOH B 326 SITE 2 AC5 6 HOH B 327 HOH B 328 SITE 1 AC6 4 ASP B 7 GLN B 73 THR B 101 HOH B 329 SITE 1 AC7 23 GLY A 8 SER A 9 THR A 10 ASN A 11 SITE 2 AC7 23 LYS A 13 GLY A 172 GLY A 173 ILE A 226 SITE 3 AC7 23 GLY A 281 GLU A 284 LEU A 285 GLN A 308 SITE 4 AC7 23 MG A 321 HOH A 325 HOH A 326 HOH A 327 SITE 5 AC7 23 HOH A 335 HOH A 339 HOH A 343 HOH A 350 SITE 6 AC7 23 HOH A 355 HOH A 396 HOH A 398 SITE 1 AC8 24 GLY B 8 SER B 9 THR B 10 ASN B 11 SITE 2 AC8 24 LYS B 13 GLY B 172 GLY B 173 ASP B 223 SITE 3 AC8 24 ILE B 226 ILE B 227 GLY B 281 GLU B 284 SITE 4 AC8 24 LEU B 285 GLN B 308 MG B 321 HOH B 325 SITE 5 AC8 24 HOH B 326 HOH B 327 HOH B 335 HOH B 339 SITE 6 AC8 24 HOH B 347 HOH B 349 HOH B 363 HOH B 422 CRYST1 64.437 64.437 201.021 90.00 90.00 90.00 P 41 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015520 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015520 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004975 0.00000 MASTER 374 0 6 30 28 0 18 6 0 0 0 50 END