HEADER REPLICATION/DNA 21-SEP-07 2Z9O TITLE CRYSTAL STRUCTURE OF THE DIMERIC FORM OF REPE IN COMPLEX WITH THE REPE TITLE 2 OPERATOR DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICATION INITIATION PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEIN REP, PROTEIN E, PROTEIN F4; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (33-MER); COMPND 8 CHAIN: C; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (33-MER); COMPND 12 CHAIN: D; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: REPE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE-9; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES KEYWDS REPLICATION INITIATOR, AUTOGENOUS REPRESSOR, PROTEIN-DNA COMPLEX, KEYWDS 2 WINGED HELIX-TURN-HELIX, DNA REPLICATION, DNA-BINDING, REPLICATION- KEYWDS 3 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.NAKAMURA,C.WADA,K.MIKI REVDAT 4 13-JUL-11 2Z9O 1 VERSN REVDAT 3 24-FEB-09 2Z9O 1 VERSN REVDAT 2 11-DEC-07 2Z9O 1 JRNL REVDAT 1 27-NOV-07 2Z9O 0 JRNL AUTH A.NAKAMURA,C.WADA,K.MIKI JRNL TITL STRUCTURAL BASIS FOR REGULATION OF BIFUNCTIONAL ROLES IN JRNL TITL 2 REPLICATION INITIATOR PROTEIN JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 18484 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 18000058 JRNL DOI 10.1073/PNAS.0705623104 REMARK 2 REMARK 2 RESOLUTION. 3.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.03 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 276022.340 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 16519 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.266 REMARK 3 FREE R VALUE : 0.313 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 850 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.011 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.14 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.34 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 72.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2136 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE : 0.4000 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 119 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.037 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3579 REMARK 3 NUCLEIC ACID ATOMS : 1347 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 38.31000 REMARK 3 B22 (A**2) : -10.08000 REMARK 3 B33 (A**2) : -28.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -7.15000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.75 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.56 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.65 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.00 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.480 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.640 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.670 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.830 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.20 REMARK 3 BSOL : 10.41 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z9O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-SEP-07. REMARK 100 THE RCSB ID CODE IS RCSB027696. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUL-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16535 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.140 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.3 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.15000 REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1REP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 4000, 200MM SODIUM CHLORIDE, REMARK 280 5MM SAMARIUM CHLORIDE, 100MM HEPES-NAOH, PH 7.2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 49.65800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8670 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -14 REMARK 465 ARG A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 ILE A -2 REMARK 465 GLU A -1 REMARK 465 GLY A 0 REMARK 465 ARG A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 ILE A 7 REMARK 465 ASN A 8 REMARK 465 HIS A 9 REMARK 465 LYS A 10 REMARK 465 LYS A 11 REMARK 465 ARG A 12 REMARK 465 LYS A 13 REMARK 465 ASN A 14 REMARK 465 SER A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 ILE A 18 REMARK 465 VAL A 19 REMARK 465 GLN A 20 REMARK 465 LYS A 48 REMARK 465 SER A 49 REMARK 465 ASP A 50 REMARK 465 GLY A 51 REMARK 465 THR A 52 REMARK 465 LEU A 53 REMARK 465 GLN A 54 REMARK 465 GLU A 55 REMARK 465 HIS A 56 REMARK 465 MET B -14 REMARK 465 ARG B -13 REMARK 465 GLY B -12 REMARK 465 SER B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 GLY B -4 REMARK 465 SER B -3 REMARK 465 ILE B -2 REMARK 465 GLU B -1 REMARK 465 GLY B 0 REMARK 465 ARG B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 THR B 4 REMARK 465 ALA B 5 REMARK 465 VAL B 6 REMARK 465 ILE B 7 REMARK 465 ASN B 8 REMARK 465 HIS B 9 REMARK 465 LYS B 10 REMARK 465 LYS B 11 REMARK 465 ARG B 12 REMARK 465 LYS B 13 REMARK 465 ASN B 14 REMARK 465 SER B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 ILE B 18 REMARK 465 VAL B 19 REMARK 465 ARG B 47 REMARK 465 LYS B 48 REMARK 465 SER B 49 REMARK 465 ASP B 50 REMARK 465 GLY B 51 REMARK 465 THR B 52 REMARK 465 LEU B 53 REMARK 465 GLN B 54 REMARK 465 GLU B 55 REMARK 465 HIS B 56 REMARK 465 MET B 248 REMARK 465 THR B 249 REMARK 465 THR B 250 REMARK 465 GLY B 251 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 21 OG REMARK 470 ASP A 57 CG OD1 OD2 REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 ASP A 105 CG OD1 OD2 REMARK 470 ARG A 124 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 140 CG1 CG2 CD1 REMARK 470 ASN A 144 CG OD1 REMARK 470 LYS A 230 CG CD CE NZ REMARK 470 LYS A 231 CG CD CE NZ REMARK 470 ARG A 233 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 234 CG CD OE1 NE2 REMARK 470 THR A 250 OG1 CG2 REMARK 470 GLN B 20 CG CD OE1 NE2 REMARK 470 ILE B 46 CG1 CG2 CD1 REMARK 470 ASP B 57 CG OD1 OD2 REMARK 470 LYS B 107 CG CD CE NZ REMARK 470 SER B 123 OG REMARK 470 ARG B 124 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 140 CG1 CG2 CD1 REMARK 470 ASN B 144 CG OD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 26 -4.92 -58.40 REMARK 500 LEU A 39 -36.44 -33.07 REMARK 500 LEU A 41 -71.98 -39.45 REMARK 500 PHE A 42 -34.61 -39.90 REMARK 500 ILE A 46 39.68 -74.97 REMARK 500 SER A 79 -74.81 -51.92 REMARK 500 ASP A 81 -75.14 -46.74 REMARK 500 ILE A 82 -55.26 -27.05 REMARK 500 ALA A 90 177.70 -57.01 REMARK 500 GLU A 93 157.04 176.03 REMARK 500 PRO A 99 -72.99 -89.90 REMARK 500 GLU A 101 -17.00 -42.98 REMARK 500 ASP A 105 44.18 -69.72 REMARK 500 TYR A 109 -154.81 -138.87 REMARK 500 GLU A 110 113.11 -177.60 REMARK 500 SER A 123 -70.44 -38.18 REMARK 500 PRO A 137 -19.93 -44.33 REMARK 500 ILE A 140 -29.80 -36.56 REMARK 500 PHE A 146 -31.33 -39.73 REMARK 500 SER A 152 -13.90 -47.47 REMARK 500 LYS A 155 -177.56 -62.74 REMARK 500 PRO A 160 -18.13 -43.53 REMARK 500 GLN A 171 -33.29 -34.44 REMARK 500 PRO A 175 25.60 -53.70 REMARK 500 GLU A 190 -80.97 -83.94 REMARK 500 ARG A 191 9.32 -58.15 REMARK 500 GLN A 193 65.30 23.66 REMARK 500 MET A 201 -54.83 -14.26 REMARK 500 PHE A 208 -88.12 -104.01 REMARK 500 LEU A 209 -80.11 -29.19 REMARK 500 ARG A 219 -43.41 -140.45 REMARK 500 LYS A 231 77.55 -114.63 REMARK 500 ASN B 22 178.37 164.79 REMARK 500 ASP B 23 -73.05 -46.96 REMARK 500 THR B 25 -72.27 -71.40 REMARK 500 GLU B 26 4.93 -66.47 REMARK 500 LEU B 31 137.36 -23.49 REMARK 500 GLN B 45 -76.71 -56.84 REMARK 500 VAL B 64 -32.64 -34.23 REMARK 500 TYR B 67 -85.45 -64.20 REMARK 500 ALA B 68 -26.39 -25.48 REMARK 500 PRO B 122 -36.15 -30.52 REMARK 500 THR B 147 -89.15 -54.42 REMARK 500 SER B 152 -7.61 -52.71 REMARK 500 LYS B 155 -167.63 -73.66 REMARK 500 ARG B 164 -73.18 -67.81 REMARK 500 LEU B 165 -23.27 -38.61 REMARK 500 SER B 168 -77.87 -68.61 REMARK 500 TYR B 172 51.83 -95.81 REMARK 500 ARG B 173 -159.05 -63.27 REMARK 500 REMARK 500 THIS ENTRY HAS 62 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DT C 1 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR DETERMINED DBREF 2Z9O C 1 33 PDB 2Z9O 2Z9O 1 33 DBREF 2Z9O D 34 66 PDB 2Z9O 2Z9O 1 33 DBREF 2Z9O A 2 251 UNP P03856 REPE1_ECOLI 2 251 DBREF 2Z9O B 2 251 UNP P03856 REPE1_ECOLI 2 251 SEQADV 2Z9O MET A -14 UNP P03856 EXPRESSION TAG SEQADV 2Z9O ARG A -13 UNP P03856 EXPRESSION TAG SEQADV 2Z9O GLY A -12 UNP P03856 EXPRESSION TAG SEQADV 2Z9O SER A -11 UNP P03856 EXPRESSION TAG SEQADV 2Z9O HIS A -10 UNP P03856 EXPRESSION TAG SEQADV 2Z9O HIS A -9 UNP P03856 EXPRESSION TAG SEQADV 2Z9O HIS A -8 UNP P03856 EXPRESSION TAG SEQADV 2Z9O HIS A -7 UNP P03856 EXPRESSION TAG SEQADV 2Z9O HIS A -6 UNP P03856 EXPRESSION TAG SEQADV 2Z9O HIS A -5 UNP P03856 EXPRESSION TAG SEQADV 2Z9O GLY A -4 UNP P03856 EXPRESSION TAG SEQADV 2Z9O SER A -3 UNP P03856 EXPRESSION TAG SEQADV 2Z9O ILE A -2 UNP P03856 EXPRESSION TAG SEQADV 2Z9O GLU A -1 UNP P03856 EXPRESSION TAG SEQADV 2Z9O GLY A 0 UNP P03856 EXPRESSION TAG SEQADV 2Z9O ARG A 1 UNP P03856 EXPRESSION TAG SEQADV 2Z9O MET B -14 UNP P03856 EXPRESSION TAG SEQADV 2Z9O ARG B -13 UNP P03856 EXPRESSION TAG SEQADV 2Z9O GLY B -12 UNP P03856 EXPRESSION TAG SEQADV 2Z9O SER B -11 UNP P03856 EXPRESSION TAG SEQADV 2Z9O HIS B -10 UNP P03856 EXPRESSION TAG SEQADV 2Z9O HIS B -9 UNP P03856 EXPRESSION TAG SEQADV 2Z9O HIS B -8 UNP P03856 EXPRESSION TAG SEQADV 2Z9O HIS B -7 UNP P03856 EXPRESSION TAG SEQADV 2Z9O HIS B -6 UNP P03856 EXPRESSION TAG SEQADV 2Z9O HIS B -5 UNP P03856 EXPRESSION TAG SEQADV 2Z9O GLY B -4 UNP P03856 EXPRESSION TAG SEQADV 2Z9O SER B -3 UNP P03856 EXPRESSION TAG SEQADV 2Z9O ILE B -2 UNP P03856 EXPRESSION TAG SEQADV 2Z9O GLU B -1 UNP P03856 EXPRESSION TAG SEQADV 2Z9O GLY B 0 UNP P03856 EXPRESSION TAG SEQADV 2Z9O ARG B 1 UNP P03856 EXPRESSION TAG SEQRES 1 A 266 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ILE SEQRES 2 A 266 GLU GLY ARG ALA GLU THR ALA VAL ILE ASN HIS LYS LYS SEQRES 3 A 266 ARG LYS ASN SER PRO ARG ILE VAL GLN SER ASN ASP LEU SEQRES 4 A 266 THR GLU ALA ALA TYR SER LEU SER ARG ASP GLN LYS ARG SEQRES 5 A 266 MET LEU TYR LEU PHE VAL ASP GLN ILE ARG LYS SER ASP SEQRES 6 A 266 GLY THR LEU GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS SEQRES 7 A 266 VAL ALA LYS TYR ALA GLU ILE PHE GLY LEU THR SER ALA SEQRES 8 A 266 GLU ALA SER LYS ASP ILE ARG GLN ALA LEU LYS SER PHE SEQRES 9 A 266 ALA GLY LYS GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP SEQRES 10 A 266 ALA GLY ASP GLU LYS GLY TYR GLU SER PHE PRO TRP PHE SEQRES 11 A 266 ILE LYS ARG ALA HIS SER PRO SER ARG GLY LEU TYR SER SEQRES 12 A 266 VAL HIS ILE ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY SEQRES 13 A 266 LEU GLN ASN ARG PHE THR GLN PHE ARG LEU SER GLU THR SEQRES 14 A 266 LYS GLU ILE THR ASN PRO TYR ALA MET ARG LEU TYR GLU SEQRES 15 A 266 SER LEU CYS GLN TYR ARG LYS PRO ASP GLY SER GLY ILE SEQRES 16 A 266 VAL SER LEU LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN SEQRES 17 A 266 LEU PRO GLN SER TYR GLN ARG MET PRO ASP PHE ARG ARG SEQRES 18 A 266 ARG PHE LEU GLN VAL CYS VAL ASN GLU ILE ASN SER ARG SEQRES 19 A 266 THR PRO MET ARG LEU SER TYR ILE GLU LYS LYS LYS GLY SEQRES 20 A 266 ARG GLN THR THR HIS ILE VAL PHE SER PHE ARG ASP ILE SEQRES 21 A 266 THR SER MET THR THR GLY SEQRES 1 B 266 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ILE SEQRES 2 B 266 GLU GLY ARG ALA GLU THR ALA VAL ILE ASN HIS LYS LYS SEQRES 3 B 266 ARG LYS ASN SER PRO ARG ILE VAL GLN SER ASN ASP LEU SEQRES 4 B 266 THR GLU ALA ALA TYR SER LEU SER ARG ASP GLN LYS ARG SEQRES 5 B 266 MET LEU TYR LEU PHE VAL ASP GLN ILE ARG LYS SER ASP SEQRES 6 B 266 GLY THR LEU GLN GLU HIS ASP GLY ILE CYS GLU ILE HIS SEQRES 7 B 266 VAL ALA LYS TYR ALA GLU ILE PHE GLY LEU THR SER ALA SEQRES 8 B 266 GLU ALA SER LYS ASP ILE ARG GLN ALA LEU LYS SER PHE SEQRES 9 B 266 ALA GLY LYS GLU VAL VAL PHE TYR ARG PRO GLU GLU ASP SEQRES 10 B 266 ALA GLY ASP GLU LYS GLY TYR GLU SER PHE PRO TRP PHE SEQRES 11 B 266 ILE LYS ARG ALA HIS SER PRO SER ARG GLY LEU TYR SER SEQRES 12 B 266 VAL HIS ILE ASN PRO TYR LEU ILE PRO PHE PHE ILE GLY SEQRES 13 B 266 LEU GLN ASN ARG PHE THR GLN PHE ARG LEU SER GLU THR SEQRES 14 B 266 LYS GLU ILE THR ASN PRO TYR ALA MET ARG LEU TYR GLU SEQRES 15 B 266 SER LEU CYS GLN TYR ARG LYS PRO ASP GLY SER GLY ILE SEQRES 16 B 266 VAL SER LEU LYS ILE ASP TRP ILE ILE GLU ARG TYR GLN SEQRES 17 B 266 LEU PRO GLN SER TYR GLN ARG MET PRO ASP PHE ARG ARG SEQRES 18 B 266 ARG PHE LEU GLN VAL CYS VAL ASN GLU ILE ASN SER ARG SEQRES 19 B 266 THR PRO MET ARG LEU SER TYR ILE GLU LYS LYS LYS GLY SEQRES 20 B 266 ARG GLN THR THR HIS ILE VAL PHE SER PHE ARG ASP ILE SEQRES 21 B 266 THR SER MET THR THR GLY SEQRES 1 C 33 DT DT DA DG DT DG DT DG DA DC DA DA DT SEQRES 2 C 33 DC DT DA DA DA DA DA DC DT DT DG DT DC SEQRES 3 C 33 DA DC DA DC DT DT DC SEQRES 1 D 33 DG DA DA DG DT DG DT DG DA DC DA DA DG SEQRES 2 D 33 DT DT DT DT DT DA DG DA DT DT DG DT DC SEQRES 3 D 33 DA DC DA DC DT DA DA HELIX 1 1 ASP A 23 SER A 30 1 8 HELIX 2 2 ARG A 33 GLN A 45 1 13 HELIX 3 3 VAL A 64 PHE A 71 1 8 HELIX 4 4 SER A 75 PHE A 89 1 15 HELIX 5 5 PRO A 133 PRO A 137 5 5 HELIX 6 6 PHE A 138 PHE A 149 1 12 HELIX 7 7 LEU A 151 GLU A 153 5 3 HELIX 8 8 PRO A 160 TYR A 172 1 13 HELIX 9 9 ILE A 185 TYR A 192 1 8 HELIX 10 10 GLN A 196 GLN A 199 5 4 HELIX 11 11 MET A 201 PHE A 208 1 8 HELIX 12 12 PHE A 208 ASN A 217 1 10 HELIX 13 14 ASP B 23 SER B 30 1 8 HELIX 14 15 ARG B 33 GLN B 45 1 13 HELIX 15 16 VAL B 64 PHE B 71 1 8 HELIX 16 17 SER B 75 ALA B 90 1 16 HELIX 17 18 PRO B 133 TYR B 134 5 2 HELIX 18 19 LEU B 135 PHE B 149 1 15 HELIX 19 20 LEU B 151 THR B 154 5 4 HELIX 20 21 PRO B 160 CYS B 170 1 11 HELIX 21 23 ASP B 186 ARG B 191 1 6 HELIX 22 24 GLN B 196 GLN B 199 5 4 HELIX 23 25 MET B 201 PHE B 208 1 8 HELIX 24 26 PHE B 208 SER B 218 1 11 SHEET 1 A 5 ILE A 59 GLU A 61 0 SHEET 2 A 5 LEU A 126 ILE A 131 -1 O VAL A 129 N CYS A 60 SHEET 3 A 5 PHE A 115 SER A 121 -1 N LYS A 117 O HIS A 130 SHEET 4 A 5 GLY B 108 PHE B 112 -1 N TYR B 109 O HIS A 120 SHEET 5 A 5 VAL B 94 ARG B 98 -1 N VAL B 94 O PHE B 112 SHEET 1 B 5 VAL A 94 ARG A 98 0 SHEET 2 B 5 GLY A 108 PHE A 112 -1 O GLY A 108 N ARG A 98 SHEET 3 B 5 ILE B 116 HIS B 120 -1 N ARG B 118 O SER A 111 SHEET 4 B 5 LEU B 126 ILE B 131 -1 N SER B 128 O ALA B 119 SHEET 5 B 5 ILE B 59 HIS B 63 -1 N CYS B 60 O VAL B 129 SHEET 1 C 3 GLY A 177 LYS A 184 0 SHEET 2 C 3 THR A 235 ASP A 244 -1 O PHE A 242 N GLY A 179 SHEET 3 C 3 MET A 222 LYS A 230 -1 N LYS A 229 O HIS A 237 SHEET 1 D 3 GLY B 179 LYS B 184 0 SHEET 2 D 3 THR B 235 PHE B 242 -1 O PHE B 240 N VAL B 181 SHEET 3 D 3 SER B 225 LYS B 230 -1 N LYS B 229 O HIS B 237 CRYST1 60.729 99.316 95.003 90.00 108.55 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016467 0.000000 0.005526 0.00000 SCALE2 0.000000 0.010069 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011103 0.00000 MASTER 426 0 0 24 16 0 0 6 0 0 0 48 END