HEADER IMMUNE SYSTEM 22-JUL-07 2Z63 TITLE CRYSTAL STRUCTURE OF THE TV8 HYBRID OF HUMAN TLR4 AND HAGFISH VLRB.61 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 4, VARIABLE LYMPHOCYTE RECEPTOR B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TLR4, UNP RESIDUES 27-527(HUMAN), VLRB.61, UNP RESIDUES COMPND 5 133-199(INSHORE HAGFISH); COMPND 6 SYNONYM: HTOLL, CD284 ANTIGEN, TV8; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, EPTATRETUS BURGERI; SOURCE 3 ORGANISM_COMMON: HUMAN, INSHORE HAGFISH; SOURCE 4 ORGANISM_TAXID: 9606, 7764; SOURCE 5 GENE: TLR4, VLRB.61; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HI-5; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVL1393 KEYWDS TLR4, TOLL-LIKE RECEPTOR, MD-2, LPS, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.M.KIM,B.S.PARK,J.-O.LEE REVDAT 6 29-JUL-20 2Z63 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 09-AUG-17 2Z63 1 SOURCE REMARK REVDAT 4 13-JUL-11 2Z63 1 VERSN REVDAT 3 21-JUL-10 2Z63 1 REMARK REVDAT 2 24-FEB-09 2Z63 1 VERSN REVDAT 1 18-SEP-07 2Z63 0 JRNL AUTH H.M.KIM,B.S.PARK,J.-I.KIM,S.E.KIM,J.LEE,S.C.OH,P.ENKHBAYAR, JRNL AUTH 2 N.MATSUSHIMA,H.LEE,O.J.YOO,J.-O.LEE JRNL TITL CRYSTAL STRUCTURE OF THE TLR4-MD-2 COMPLEX WITH BOUND JRNL TITL 2 ENDOTOXIN ANTAGONIST ERITORAN JRNL REF CELL(CAMBRIDGE,MASS.) V. 130 906 2007 JRNL REFN ISSN 0092-8674 JRNL PMID 17803912 JRNL DOI 10.1016/J.CELL.2007.08.002 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 48960 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.250 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2622 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2528 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.37 REMARK 3 BIN R VALUE (WORKING SET) : 0.2870 REMARK 3 BIN FREE R VALUE SET COUNT : 136 REMARK 3 BIN FREE R VALUE : 0.3540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4536 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 292 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : -0.49000 REMARK 3 B33 (A**2) : 0.73000 REMARK 3 B12 (A**2) : -0.24000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.213 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.195 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.892 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.893 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.855 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4707 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6384 ; 1.380 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 569 ; 4.994 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;40.341 ;25.046 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 822 ;16.458 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;13.751 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 740 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3486 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2049 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3082 ; 0.319 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 301 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.211 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 23 ; 0.233 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2940 ; 1.535 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4600 ; 2.161 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1978 ; 3.818 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1784 ; 5.344 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 198 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6788 -23.7399 4.2832 REMARK 3 T TENSOR REMARK 3 T11: -0.0624 T22: -0.0333 REMARK 3 T33: -0.1074 T12: 0.0338 REMARK 3 T13: 0.0127 T23: 0.0268 REMARK 3 L TENSOR REMARK 3 L11: 2.1206 L22: 1.9992 REMARK 3 L33: 1.1697 L12: 0.5256 REMARK 3 L13: 0.5187 L23: 0.3776 REMARK 3 S TENSOR REMARK 3 S11: 0.0002 S12: 0.0013 S13: 0.1023 REMARK 3 S21: 0.0802 S22: -0.0138 S23: -0.1733 REMARK 3 S31: -0.1081 S32: 0.1737 S33: 0.0136 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 199 A 348 REMARK 3 ORIGIN FOR THE GROUP (A): 5.9241 -36.6346 0.3541 REMARK 3 T TENSOR REMARK 3 T11: -0.0505 T22: -0.1041 REMARK 3 T33: -0.0629 T12: -0.0138 REMARK 3 T13: 0.0292 T23: -0.0384 REMARK 3 L TENSOR REMARK 3 L11: 1.3441 L22: 1.9743 REMARK 3 L33: 1.3236 L12: -0.5943 REMARK 3 L13: -0.4742 L23: -0.2298 REMARK 3 S TENSOR REMARK 3 S11: -0.0124 S12: 0.0811 S13: -0.2778 REMARK 3 S21: -0.0580 S22: -0.0280 S23: 0.2066 REMARK 3 S31: 0.2333 S32: -0.0790 S33: 0.0404 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 349 A 596 REMARK 3 ORIGIN FOR THE GROUP (A): -4.7521 -2.0889 19.4915 REMARK 3 T TENSOR REMARK 3 T11: -0.1251 T22: -0.1204 REMARK 3 T33: -0.1624 T12: 0.0072 REMARK 3 T13: 0.0132 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.8080 L22: 2.1941 REMARK 3 L33: 0.7391 L12: 0.4185 REMARK 3 L13: 0.0830 L23: 0.3655 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: -0.0700 S13: 0.0813 REMARK 3 S21: 0.0807 S22: -0.0967 S23: 0.2155 REMARK 3 S31: -0.0109 S32: -0.0939 S33: 0.0964 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z63 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000027567. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-07 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48960 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2Z62 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CITRATE, 0.1M BIS-TRIS REMARK 280 PROPANE, 27% PEG 1000, PH 6.50, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.73500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.47000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR DETERMINED BIOLOGICAL UNIT: UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 16.75 44.98 REMARK 500 ILE A 36 -55.07 -132.82 REMARK 500 CYS A 40 39.13 -82.31 REMARK 500 GLU A 42 77.80 27.61 REMARK 500 PRO A 65 65.35 -57.27 REMARK 500 ARG A 67 -61.82 68.54 REMARK 500 GLU A 89 48.70 25.88 REMARK 500 THR A 110 126.28 -27.67 REMARK 500 ASN A 137 28.08 42.08 REMARK 500 ASN A 160 -161.17 -115.19 REMARK 500 ASN A 185 -148.37 -111.05 REMARK 500 PRO A 214 71.70 -69.43 REMARK 500 GLU A 225 16.28 59.51 REMARK 500 GLU A 266 -71.15 -106.86 REMARK 500 ALA A 276 -13.64 -43.79 REMARK 500 ILE A 300 -54.50 -133.53 REMARK 500 GLU A 321 -68.59 -108.74 REMARK 500 LYS A 324 18.06 -154.41 REMARK 500 SER A 327 77.67 -65.43 REMARK 500 TYR A 328 -141.10 -122.57 REMARK 500 PHE A 330 136.58 -39.03 REMARK 500 ASN A 365 40.96 -77.51 REMARK 500 ASN A 409 -166.92 -122.53 REMARK 500 SER A 415 -33.33 -143.57 REMARK 500 SER A 441 78.84 -112.75 REMARK 500 ALA A 462 -68.73 -142.16 REMARK 500 LEU A 470 51.63 -92.31 REMARK 500 MET A 478 30.26 -142.02 REMARK 500 ASN A 481 -157.87 -93.17 REMARK 500 LEU A 495 54.96 -95.64 REMARK 500 ASN A 530 -161.67 -114.68 REMARK 500 ASP A 541 -39.91 -39.78 REMARK 500 CYS A 558 42.96 -96.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 POLYSACCHARIDES WERE ORIGINALLY ASSIGNED TO CHAINS M(1411-1412) AND REMARK 600 N(1401-1403), RESPECTIVELY. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z62 RELATED DB: PDB REMARK 900 THE TV3 HYBRID OF HUMAN TLR4 AND HAGFISH VLRB.61 REMARK 900 RELATED ID: 2Z64 RELATED DB: PDB REMARK 900 THE MOUSE TLR4 AND MOUSE MD-2 COMPLEX REMARK 900 RELATED ID: 2Z65 RELATED DB: PDB REMARK 900 THE HUMAN TLR4 TV3 HYBRID-MD-2-ERITORAN COMPLEX REMARK 900 RELATED ID: 2Z66 RELATED DB: PDB REMARK 900 THE VT3 HYBRID OF HUMAN TLR4 AND HAGFISH VLRB.61 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT INCLUDES A LINKER THAT CONSIST OF 528TH ALA AND REMARK 999 529TH SER. DBREF 2Z63 A 27 527 UNP O00206 TLR4_HUMAN 27 527 DBREF 2Z63 A 530 596 UNP Q4G1L2 Q4G1L2_EPTBU 133 199 SEQADV 2Z63 ALA A 528 UNP O00206 SEE REMARK 999 SEQADV 2Z63 SER A 529 UNP O00206 SEE REMARK 999 SEQRES 1 A 570 GLU PRO CYS VAL GLU VAL VAL PRO ASN ILE THR TYR GLN SEQRES 2 A 570 CYS MET GLU LEU ASN PHE TYR LYS ILE PRO ASP ASN LEU SEQRES 3 A 570 PRO PHE SER THR LYS ASN LEU ASP LEU SER PHE ASN PRO SEQRES 4 A 570 LEU ARG HIS LEU GLY SER TYR SER PHE PHE SER PHE PRO SEQRES 5 A 570 GLU LEU GLN VAL LEU ASP LEU SER ARG CYS GLU ILE GLN SEQRES 6 A 570 THR ILE GLU ASP GLY ALA TYR GLN SER LEU SER HIS LEU SEQRES 7 A 570 SER THR LEU ILE LEU THR GLY ASN PRO ILE GLN SER LEU SEQRES 8 A 570 ALA LEU GLY ALA PHE SER GLY LEU SER SER LEU GLN LYS SEQRES 9 A 570 LEU VAL ALA VAL GLU THR ASN LEU ALA SER LEU GLU ASN SEQRES 10 A 570 PHE PRO ILE GLY HIS LEU LYS THR LEU LYS GLU LEU ASN SEQRES 11 A 570 VAL ALA HIS ASN LEU ILE GLN SER PHE LYS LEU PRO GLU SEQRES 12 A 570 TYR PHE SER ASN LEU THR ASN LEU GLU HIS LEU ASP LEU SEQRES 13 A 570 SER SER ASN LYS ILE GLN SER ILE TYR CYS THR ASP LEU SEQRES 14 A 570 ARG VAL LEU HIS GLN MET PRO LEU LEU ASN LEU SER LEU SEQRES 15 A 570 ASP LEU SER LEU ASN PRO MET ASN PHE ILE GLN PRO GLY SEQRES 16 A 570 ALA PHE LYS GLU ILE ARG LEU HIS LYS LEU THR LEU ARG SEQRES 17 A 570 ASN ASN PHE ASP SER LEU ASN VAL MET LYS THR CYS ILE SEQRES 18 A 570 GLN GLY LEU ALA GLY LEU GLU VAL HIS ARG LEU VAL LEU SEQRES 19 A 570 GLY GLU PHE ARG ASN GLU GLY ASN LEU GLU LYS PHE ASP SEQRES 20 A 570 LYS SER ALA LEU GLU GLY LEU CYS ASN LEU THR ILE GLU SEQRES 21 A 570 GLU PHE ARG LEU ALA TYR LEU ASP TYR TYR LEU ASP ASP SEQRES 22 A 570 ILE ILE ASP LEU PHE ASN CYS LEU THR ASN VAL SER SER SEQRES 23 A 570 PHE SER LEU VAL SER VAL THR ILE GLU ARG VAL LYS ASP SEQRES 24 A 570 PHE SER TYR ASN PHE GLY TRP GLN HIS LEU GLU LEU VAL SEQRES 25 A 570 ASN CYS LYS PHE GLY GLN PHE PRO THR LEU LYS LEU LYS SEQRES 26 A 570 SER LEU LYS ARG LEU THR PHE THR SER ASN LYS GLY GLY SEQRES 27 A 570 ASN ALA PHE SER GLU VAL ASP LEU PRO SER LEU GLU PHE SEQRES 28 A 570 LEU ASP LEU SER ARG ASN GLY LEU SER PHE LYS GLY CYS SEQRES 29 A 570 CYS SER GLN SER ASP PHE GLY THR THR SER LEU LYS TYR SEQRES 30 A 570 LEU ASP LEU SER PHE ASN GLY VAL ILE THR MET SER SER SEQRES 31 A 570 ASN PHE LEU GLY LEU GLU GLN LEU GLU HIS LEU ASP PHE SEQRES 32 A 570 GLN HIS SER ASN LEU LYS GLN MET SER GLU PHE SER VAL SEQRES 33 A 570 PHE LEU SER LEU ARG ASN LEU ILE TYR LEU ASP ILE SER SEQRES 34 A 570 HIS THR HIS THR ARG VAL ALA PHE ASN GLY ILE PHE ASN SEQRES 35 A 570 GLY LEU SER SER LEU GLU VAL LEU LYS MET ALA GLY ASN SEQRES 36 A 570 SER PHE GLN GLU ASN PHE LEU PRO ASP ILE PHE THR GLU SEQRES 37 A 570 LEU ARG ASN LEU THR PHE LEU ASP LEU SER GLN CYS GLN SEQRES 38 A 570 LEU GLU GLN LEU SER PRO THR ALA PHE ASN SER LEU SER SEQRES 39 A 570 SER LEU GLN VAL LEU ASN MET ALA SER ASN GLN LEU LYS SEQRES 40 A 570 SER VAL PRO ASP GLY ILE PHE ASP ARG LEU THR SER LEU SEQRES 41 A 570 GLN LYS ILE TRP LEU HIS THR ASN PRO TRP ASP CYS SER SEQRES 42 A 570 CYS PRO ARG ILE ASP TYR LEU SER ARG TRP LEU ASN LYS SEQRES 43 A 570 ASN SER GLN LYS GLU GLN GLY SER ALA LYS CYS SER GLY SEQRES 44 A 570 SER GLY LYS PRO VAL ARG SER ILE ILE CYS PRO MODRES 2Z63 ASN A 497 ASN GLYCOSYLATION SITE MODRES 2Z63 ASN A 309 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET FUL B 3 10 HET NAG C 1 14 HET NAG C 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETSYN FUL 6-DEOXY-BETA-L-GALACTOSE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 2 FUL C6 H12 O5 FORMUL 4 HOH *292(H2 O) HELIX 1 1 PRO A 168 LEU A 174 5 7 HELIX 2 2 TYR A 191 ASP A 194 5 4 HELIX 3 3 LEU A 195 GLN A 200 1 6 HELIX 4 4 ASN A 241 GLY A 249 1 9 HELIX 5 5 LEU A 277 LEU A 283 5 7 HELIX 6 6 PHE A 304 THR A 308 5 5 HELIX 7 7 GLN A 393 GLY A 397 1 5 HELIX 8 8 ILE A 563 ASN A 573 1 11 HELIX 9 9 PRO A 589 ILE A 593 5 5 SHEET 1 A24 VAL A 30 VAL A 33 0 SHEET 2 A24 THR A 37 GLN A 39 -1 O THR A 37 N VAL A 33 SHEET 3 A24 ASN A 58 ASP A 60 1 O ASP A 60 N TYR A 38 SHEET 4 A24 VAL A 82 ASP A 84 1 O VAL A 82 N LEU A 59 SHEET 5 A24 THR A 106 ILE A 108 1 O ILE A 108 N LEU A 83 SHEET 6 A24 LYS A 130 VAL A 132 1 O VAL A 132 N LEU A 107 SHEET 7 A24 GLU A 154 ASN A 156 1 O GLU A 154 N LEU A 131 SHEET 8 A24 HIS A 179 ASP A 181 1 O ASP A 181 N LEU A 155 SHEET 9 A24 SER A 207 ASP A 209 1 O SER A 207 N LEU A 180 SHEET 10 A24 ARG A 227 ARG A 234 1 O LYS A 230 N LEU A 208 SHEET 11 A24 GLU A 254 GLU A 262 1 O VAL A 259 N LEU A 231 SHEET 12 A24 THR A 284 TYR A 292 1 O THR A 284 N VAL A 255 SHEET 13 A24 SER A 312 VAL A 316 1 O SER A 312 N PHE A 288 SHEET 14 A24 HIS A 334 VAL A 338 1 O GLU A 336 N LEU A 315 SHEET 15 A24 ARG A 355 THR A 359 1 O THR A 357 N LEU A 337 SHEET 16 A24 PHE A 377 ASP A 379 1 O ASP A 379 N PHE A 358 SHEET 17 A24 TYR A 403 ASP A 405 1 O ASP A 405 N LEU A 378 SHEET 18 A24 HIS A 426 ASP A 428 1 O ASP A 428 N LEU A 404 SHEET 19 A24 TYR A 451 ASP A 453 1 O TYR A 451 N LEU A 427 SHEET 20 A24 VAL A 475 LYS A 477 1 O VAL A 475 N LEU A 452 SHEET 21 A24 PHE A 500 ASP A 502 1 O PHE A 500 N LEU A 476 SHEET 22 A24 VAL A 524 ASN A 526 1 O ASN A 526 N LEU A 501 SHEET 23 A24 LYS A 548 TRP A 550 1 O TRP A 550 N LEU A 525 SHEET 24 A24 GLU A 577 GLN A 578 1 O GLN A 578 N ILE A 549 SHEET 1 B 3 HIS A 68 LEU A 69 0 SHEET 2 B 3 THR A 92 ILE A 93 1 O THR A 92 N LEU A 69 SHEET 3 B 3 SER A 116 LEU A 117 1 O SER A 116 N ILE A 93 SHEET 1 C 2 SER A 189 ILE A 190 0 SHEET 2 C 2 PHE A 217 ILE A 218 1 O PHE A 217 N ILE A 190 SHEET 1 D 3 GLU A 270 LYS A 271 0 SHEET 2 D 3 TYR A 295 LEU A 297 1 O TYR A 296 N GLU A 270 SHEET 3 D 3 THR A 319 ILE A 320 1 O THR A 319 N TYR A 295 SHEET 1 E 3 PHE A 387 SER A 392 0 SHEET 2 E 3 VAL A 411 LEU A 419 1 O THR A 413 N PHE A 387 SHEET 3 E 3 ASN A 433 LYS A 435 1 O ASN A 433 N ILE A 412 SHEET 1 F 2 ARG A 460 VAL A 461 0 SHEET 2 F 2 SER A 482 PHE A 483 1 O SER A 482 N VAL A 461 SHEET 1 G 2 PHE A 487 LEU A 488 0 SHEET 2 G 2 GLN A 510 LEU A 511 1 O GLN A 510 N LEU A 488 SSBOND 1 CYS A 29 CYS A 40 1555 1555 2.06 SSBOND 2 CYS A 281 CYS A 306 1555 1555 2.04 SSBOND 3 CYS A 390 CYS A 391 1555 1555 2.04 SSBOND 4 CYS A 558 CYS A 583 1555 1555 2.00 SSBOND 5 CYS A 560 CYS A 595 1555 1555 2.04 LINK ND2 ASN A 309 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 497 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O6 NAG B 1 C1 FUL B 3 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 CISPEP 1 CYS A 390 CYS A 391 0 -4.27 CISPEP 2 CYS A 560 PRO A 561 0 1.78 CRYST1 88.136 88.136 92.205 90.00 90.00 120.00 P 31 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011346 0.006551 0.000000 0.00000 SCALE2 0.000000 0.013101 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010845 0.00000 MASTER 355 0 5 9 39 0 0 6 0 0 0 44 END