HEADER IMMUNE SYSTEM 22-JUL-07 2Z62 TITLE CRYSTAL STRUCTURE OF THE TV3 HYBRID OF HUMAN TLR4 AND HAGFISH VLRB.61 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TOLL-LIKE RECEPTOR 4, VARIABLE LYMPHOCYTE RECEPTOR B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TLR4, UNP RESIDUES 27-228(HUMAN), VLRB.61, UNP RESIDUES COMPND 5 128-199(INSHORE HAGFISH); COMPND 6 SYNONYM: HTOLL, CD284 ANTIGEN, TV3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, EPTATRETUS BURGERI; SOURCE 3 ORGANISM_COMMON: HUMAN, INSHORE HAGFISH; SOURCE 4 ORGANISM_TAXID: 9606, 7764; SOURCE 5 GENE: TLR4, VLRB.61; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HI-5; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PVL1393 KEYWDS TLR, TOLL-LIKE RECEPTOR, VLR HYBRID, MD-2, LPS, GLYCOPROTEIN, IMMUNE KEYWDS 2 RESPONSE, INFLAMMATORY RESPONSE, INNATE IMMUNITY, LEUCINE-RICH KEYWDS 3 REPEAT, MEMBRANE, TRANSMEMBRANE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR J.-O.LEE,H.M.KIM,B.S.PARK REVDAT 6 29-JUL-20 2Z62 1 COMPND REMARK HETNAM LINK REVDAT 6 2 1 SITE ATOM REVDAT 5 09-AUG-17 2Z62 1 SOURCE REMARK REVDAT 4 13-JUL-11 2Z62 1 VERSN REVDAT 3 21-JUL-10 2Z62 1 REMARK REVDAT 2 24-FEB-09 2Z62 1 VERSN REVDAT 1 18-SEP-07 2Z62 0 JRNL AUTH H.M.KIM,B.S.PARK,J.-I.KIM,S.E.KIM,J.LEE,S.C.OH,P.ENKHBAYAR, JRNL AUTH 2 N.MATSUSHIMA,H.LEE,O.J.YOO,J.-O.LEE JRNL TITL CRYSTAL STRUCTURE OF THE TLR4-MD-2 COMPLEX WITH BOUND JRNL TITL 2 ENDOTOXIN ANTAGONIST ERITORAN JRNL REF CELL(CAMBRIDGE,MASS.) V. 130 906 2007 JRNL REFN ISSN 0092-8674 JRNL PMID 17803912 JRNL DOI 10.1016/J.CELL.2007.08.002 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 29573 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1588 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2115 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2500 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.2810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2189 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 115 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -0.50000 REMARK 3 B33 (A**2) : 0.71000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.122 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2365 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3228 ; 1.188 ; 2.039 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 275 ; 5.275 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;40.843 ;25.306 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 397 ;13.485 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.356 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 392 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1695 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1036 ; 0.197 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1586 ; 0.317 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 165 ; 0.108 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 88 ; 0.235 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.304 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 302 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1091 0.0140 8.4018 REMARK 3 T TENSOR REMARK 3 T11: -0.1279 T22: -0.1238 REMARK 3 T33: -0.1232 T12: -0.0089 REMARK 3 T13: 0.0125 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.7018 L22: 0.9486 REMARK 3 L33: 1.4983 L12: -0.5953 REMARK 3 L13: 0.6968 L23: -0.8044 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.0051 S13: -0.0144 REMARK 3 S21: -0.0411 S22: 0.0111 S23: 0.0300 REMARK 3 S31: 0.0289 S32: -0.0639 S33: -0.0220 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z62 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000027566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29573 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1ZIW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M NACL, 0.1M BIS-TRIS PROPANE, 33% REMARK 280 PEG 1000, PH 5.50, VAPOR DIFFUSION, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.97250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.31850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.10700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.31850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.97250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.10700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHOR DETERMINED BIOLOGICAL UNIT: UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 323 O HOH A 538 1.67 REMARK 500 OD1 ASN A 64 O HOH A 538 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 369 O HOH A 536 4555 1.81 REMARK 500 O2 FUL B 4 O HOH A 503 1455 1.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 35 -5.17 71.12 REMARK 500 ILE A 36 -51.74 -128.68 REMARK 500 ARG A 67 -45.63 67.88 REMARK 500 LEU A 101 58.65 -93.52 REMARK 500 ASN A 160 -159.80 -129.15 REMARK 500 ASN A 185 -152.19 -113.46 REMARK 500 GLU A 225 15.01 56.71 REMARK 500 ASN A 236 -147.17 -105.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 POLYSACCHARIDES WERE ORIGINALLY ASSIGNED TO CHAINS M(701-703), REMARK 600 N(801-804), AND L(901-902), RESPECTIVELY. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z63 RELATED DB: PDB REMARK 900 THE TV8 HYBRID OF HUMAN TLR4 AND HAGFISH VLRB.61 REMARK 900 RELATED ID: 2Z64 RELATED DB: PDB REMARK 900 THE MOUSE TLR4 AND MOUSE MD-2 COMPLEX REMARK 900 RELATED ID: 2Z65 RELATED DB: PDB REMARK 900 THE HUMAN TLR4 TV3 HYBRID-MD-2-ERITORAN COMPLEX REMARK 900 RELATED ID: 2Z66 RELATED DB: PDB REMARK 900 THE VT3 HYBRID OF HUMAN TLR4 AND HAGFISH VLRB.61 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT INCLUDES A LINKER THAT CONSIST OF 229TH LYS AND REMARK 999 230TH GLU. DBREF 2Z62 A 27 228 UNP O00206 TLR4_HUMAN 27 228 DBREF 2Z62 A 231 302 UNP Q4G1L2 Q4G1L2_EPTBU 128 199 SEQADV 2Z62 LYS A 229 UNP O00206 SEE REMARK 999 SEQADV 2Z62 GLU A 230 UNP O00206 SEE REMARK 999 SEQRES 1 A 276 GLU PRO CYS VAL GLU VAL VAL PRO ASN ILE THR TYR GLN SEQRES 2 A 276 CYS MET GLU LEU ASN PHE TYR LYS ILE PRO ASP ASN LEU SEQRES 3 A 276 PRO PHE SER THR LYS ASN LEU ASP LEU SER PHE ASN PRO SEQRES 4 A 276 LEU ARG HIS LEU GLY SER TYR SER PHE PHE SER PHE PRO SEQRES 5 A 276 GLU LEU GLN VAL LEU ASP LEU SER ARG CYS GLU ILE GLN SEQRES 6 A 276 THR ILE GLU ASP GLY ALA TYR GLN SER LEU SER HIS LEU SEQRES 7 A 276 SER THR LEU ILE LEU THR GLY ASN PRO ILE GLN SER LEU SEQRES 8 A 276 ALA LEU GLY ALA PHE SER GLY LEU SER SER LEU GLN LYS SEQRES 9 A 276 LEU VAL ALA VAL GLU THR ASN LEU ALA SER LEU GLU ASN SEQRES 10 A 276 PHE PRO ILE GLY HIS LEU LYS THR LEU LYS GLU LEU ASN SEQRES 11 A 276 VAL ALA HIS ASN LEU ILE GLN SER PHE LYS LEU PRO GLU SEQRES 12 A 276 TYR PHE SER ASN LEU THR ASN LEU GLU HIS LEU ASP LEU SEQRES 13 A 276 SER SER ASN LYS ILE GLN SER ILE TYR CYS THR ASP LEU SEQRES 14 A 276 ARG VAL LEU HIS GLN MET PRO LEU LEU ASN LEU SER LEU SEQRES 15 A 276 ASP LEU SER LEU ASN PRO MET ASN PHE ILE GLN PRO GLY SEQRES 16 A 276 ALA PHE LYS GLU ILE ARG LEU LYS GLU LEU ALA LEU ASP SEQRES 17 A 276 THR ASN GLN LEU LYS SER VAL PRO ASP GLY ILE PHE ASP SEQRES 18 A 276 ARG LEU THR SER LEU GLN LYS ILE TRP LEU HIS THR ASN SEQRES 19 A 276 PRO TRP ASP CYS SER CYS PRO ARG ILE ASP TYR LEU SER SEQRES 20 A 276 ARG TRP LEU ASN LYS ASN SER GLN LYS GLU GLN GLY SER SEQRES 21 A 276 ALA LYS CYS SER GLY SER GLY LYS PRO VAL ARG SER ILE SEQRES 22 A 276 ILE CYS PRO MODRES 2Z62 ASN A 35 ASN GLYCOSYLATION SITE MODRES 2Z62 ASN A 173 ASN GLYCOSYLATION SITE MODRES 2Z62 ASN A 205 ASN GLYCOSYLATION SITE HET NAG B 1 14 HET NAG B 2 14 HET BMA B 3 11 HET FUL B 4 10 HET NAG C 1 14 HET NAG C 2 14 HET FUL C 3 10 HET NAG D 1 14 HET NAG D 2 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM FUL BETA-L-FUCOPYRANOSE HETSYN FUL 6-DEOXY-BETA-L-GALACTOSE FORMUL 2 NAG 6(C8 H15 N O6) FORMUL 2 BMA C6 H12 O6 FORMUL 2 FUL 2(C6 H12 O5) FORMUL 5 HOH *242(H2 O) HELIX 1 1 PRO A 168 LEU A 174 5 7 HELIX 2 2 TYR A 191 ASP A 194 5 4 HELIX 3 3 LEU A 195 GLN A 200 1 6 HELIX 4 4 ILE A 269 ASN A 279 1 11 HELIX 5 5 SER A 280 GLU A 283 5 4 HELIX 6 6 PRO A 295 ILE A 299 5 5 SHEET 1 A11 VAL A 30 VAL A 33 0 SHEET 2 A11 THR A 37 GLN A 39 -1 O GLN A 39 N VAL A 30 SHEET 3 A11 ASN A 58 ASP A 60 1 O ASN A 58 N TYR A 38 SHEET 4 A11 VAL A 82 ASP A 84 1 O ASP A 84 N LEU A 59 SHEET 5 A11 THR A 106 ILE A 108 1 O ILE A 108 N LEU A 83 SHEET 6 A11 LYS A 130 VAL A 132 1 O VAL A 132 N LEU A 107 SHEET 7 A11 GLU A 154 ASN A 156 1 O ASN A 156 N LEU A 131 SHEET 8 A11 HIS A 179 ASP A 181 1 O HIS A 179 N LEU A 155 SHEET 9 A11 LEU A 206 ASP A 209 1 O SER A 207 N LEU A 180 SHEET 10 A11 LEU A 228 ALA A 232 1 O GLU A 230 N LEU A 208 SHEET 11 A11 LYS A 254 TRP A 256 1 O TRP A 256 N LEU A 231 SHEET 1 B 3 HIS A 68 LEU A 69 0 SHEET 2 B 3 THR A 92 ILE A 93 1 O THR A 92 N LEU A 69 SHEET 3 B 3 SER A 116 LEU A 117 1 O SER A 116 N ILE A 93 SHEET 1 C 2 SER A 189 ILE A 190 0 SHEET 2 C 2 PHE A 217 ILE A 218 1 O PHE A 217 N ILE A 190 SSBOND 1 CYS A 29 CYS A 40 1555 1555 2.05 SSBOND 2 CYS A 264 CYS A 289 1555 1555 2.02 SSBOND 3 CYS A 266 CYS A 301 1555 1555 2.04 LINK ND2 ASN A 35 C1 NAG C 1 1555 1555 1.44 LINK ND2 ASN A 173 C1 NAG B 1 1555 1555 1.45 LINK ND2 ASN A 205 C1 NAG D 1 1555 1555 1.45 LINK O4 NAG B 1 C1 NAG B 2 1555 1555 1.45 LINK O6 NAG B 1 C1 FUL B 4 1555 1555 1.44 LINK O4 NAG B 2 C1 BMA B 3 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.44 LINK O6 NAG C 1 C1 FUL C 3 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 CISPEP 1 CYS A 266 PRO A 267 0 5.07 CRYST1 43.945 54.214 116.637 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022756 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008574 0.00000 MASTER 329 0 9 6 16 0 0 6 0 0 0 22 END