HEADER HYDROLASE/STRUCTURAL PROTEIN 07-MAY-07 2Z0D TITLE THE CRYSTAL STRUCTURE OF HUMAN ATG4B- LC3(1-120) COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYSTEINE PROTEASE ATG4B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES (-2)-354; COMPND 5 SYNONYM: HSATG4B, AUTOPHAGY-RELATED PROTEIN 4 HOMOLOG B, COMPND 6 HAPG4B, AUTOPHAGIN-1, AUTOPHAGY-RELATED CYSTEINE COMPND 7 ENDOPEPTIDASE 1, AUT-LIKE 1 CYSTEINE ENDOPEPTIDASE; COMPND 8 EC: 3.4.22.-; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 MOL_ID: 2; COMPND 12 MOLECULE: MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN COMPND 13 3B; COMPND 14 CHAIN: B; COMPND 15 SYNONYM: LC3, MICROTUBULE-ASSOCIATED PROTEIN 1 LIGHT CHAIN COMPND 16 3 BETA, MAP1A/MAP1B LC3 B, MAP1A/1B LIGHT CHAIN 3 B, MAP1 COMPND 17 LIGHT CHAIN 3-LIKE PROTEIN 2, AUTOPHAGY-RELATED PROTEIN LC3 COMPND 18 B, AUTOPHAGY-RELATED UBIQUITIN-LIKE MODIFIER LC3 B; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PGEX6P; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 12 ORGANISM_COMMON: NORWAY RAT; SOURCE 13 ORGANISM_TAXID: 10116; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PGEX6P KEYWDS PAPAIN-LIKE FOLD, UBIQUITIN FOLD, HYDROLASE/STRUCTURAL KEYWDS 2 PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.SATOO,N.N.NODA,F.INAGAKI REVDAT 3 06-OCT-09 2Z0D 1 JRNL REVDAT 2 24-FEB-09 2Z0D 1 VERSN REVDAT 1 22-MAY-07 2Z0D 0 JRNL AUTH K.SATOO,N.N.NODA,H.KUMETA,Y.FUJIOKA,N.MIZUSHIMA, JRNL AUTH 2 Y.OHSUMI,F.INAGAKI JRNL TITL THE STRUCTURE OF ATG4B-LC3 COMPLEX REVEALS THE JRNL TITL 2 MECHANISM OF LC3 PROCESSING AND DELIPIDATION DURING JRNL TITL 3 AUTOPHAGY. JRNL REF EMBO J. V. 28 1341 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19322194 JRNL DOI 10.1038/EMBOJ.2009.80 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.84 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 208436.610 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.6 REMARK 3 NUMBER OF REFLECTIONS : 33509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3341 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4567 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE : 0.2710 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 486 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3364 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 314 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67000 REMARK 3 B22 (A**2) : 5.41000 REMARK 3 B33 (A**2) : -6.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.16 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.30 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.78 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 44.87 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2Z0D COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB027361. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34586 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2CY7, 1UGM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1M SODIUM CITRATE, REMARK 280 PH 5.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.73750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.29700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.90600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.29700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.73750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.90600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HETERO-DIMER OF MOLECULES A REMARK 300 AND B. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 VAL A 187 REMARK 465 PRO A 188 REMARK 465 CYS A 189 REMARK 465 ALA A 190 REMARK 465 GLY A 191 REMARK 465 ALA A 192 REMARK 465 THR A 193 REMARK 465 ALA A 194 REMARK 465 PHE A 195 REMARK 465 PRO A 196 REMARK 465 ALA A 197 REMARK 465 ASP A 198 REMARK 465 SER A 199 REMARK 465 ASP A 200 REMARK 465 ARG A 201 REMARK 465 HIS A 202 REMARK 465 CYS A 203 REMARK 465 ASN A 204 REMARK 465 GLY A 205 REMARK 465 PHE A 206 REMARK 465 PRO A 207 REMARK 465 ALA A 208 REMARK 465 GLY A 209 REMARK 465 ALA A 210 REMARK 465 GLU A 211 REMARK 465 VAL A 212 REMARK 465 THR A 213 REMARK 465 ASN A 214 REMARK 465 ARG A 215 REMARK 465 PRO A 216 REMARK 465 SER A 217 REMARK 465 THR A 289 REMARK 465 ASP A 290 REMARK 465 GLY A 291 REMARK 465 CYS A 292 REMARK 465 PHE A 293 REMARK 465 SER A 340 REMARK 465 LEU A 341 REMARK 465 LEU A 342 REMARK 465 GLY A 343 REMARK 465 GLY A 344 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 PRO B 2 REMARK 465 SER B 3 REMARK 465 GLU B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 5 OG1 CG2 REMARK 470 ARG A 12 CG CD NE CZ NH1 NH2 REMARK 470 PHE A 13 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 17 CG CD OE1 OE2 REMARK 470 GLU A 21 CG CD OE1 OE2 REMARK 470 SER A 23 OG REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 ARG A 101 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 102 CG CD CE NZ REMARK 470 ARG A 118 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 177 CG CD OE1 OE2 REMARK 470 ARG A 181 CG CD NE CZ NH1 NH2 REMARK 470 THR A 185 OG1 CG2 REMARK 470 SER A 186 OG REMARK 470 SER A 262 OG REMARK 470 GLU A 287 CG CD OE1 OE2 REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 LYS A 337 CG CD CE NZ REMARK 470 LYS A 338 CG CD CE NZ REMARK 470 GLN A 354 CG CD OE1 NE2 REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 ARG B 69 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 24 N - CA - C ANGL. DEV. = -19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 11 94.14 -68.58 REMARK 500 SER A 23 81.57 -49.11 REMARK 500 ASN A 57 32.07 71.83 REMARK 500 ASN A 172 15.39 59.97 REMARK 500 LEU A 230 40.36 -77.61 REMARK 500 SER A 262 89.68 -150.63 REMARK 500 ALA A 280 41.04 -67.44 REMARK 500 GLN A 302 53.27 -91.74 REMARK 500 SER B 115 -120.11 -110.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLU A 24 45.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2Z0E RELATED DB: PDB DBREF 2Z0D A 1 354 UNP Q9Y4P1 ATG4B_HUMAN 1 354 DBREF 2Z0D B 1 120 UNP Q62625 MLP3B_RAT 1 120 SEQADV 2Z0D GLY A -2 UNP Q9Y4P1 CLONING ARTIFACT SEQADV 2Z0D PRO A -1 UNP Q9Y4P1 CLONING ARTIFACT SEQADV 2Z0D HIS A 0 UNP Q9Y4P1 CLONING ARTIFACT SEQADV 2Z0D ALA A 280 UNP Q9Y4P1 HIS 280 ENGINEERED SEQADV 2Z0D GLY B -4 UNP Q62625 CLONING ARTIFACT SEQADV 2Z0D PRO B -3 UNP Q62625 CLONING ARTIFACT SEQADV 2Z0D LEU B -2 UNP Q62625 CLONING ARTIFACT SEQADV 2Z0D GLY B -1 UNP Q62625 CLONING ARTIFACT SEQADV 2Z0D SER B 0 UNP Q62625 CLONING ARTIFACT SEQRES 1 A 357 GLY PRO HIS MET ASP ALA ALA THR LEU THR TYR ASP THR SEQRES 2 A 357 LEU ARG PHE ALA GLU PHE GLU ASP PHE PRO GLU THR SER SEQRES 3 A 357 GLU PRO VAL TRP ILE LEU GLY ARG LYS TYR SER ILE PHE SEQRES 4 A 357 THR GLU LYS ASP GLU ILE LEU SER ASP VAL ALA SER ARG SEQRES 5 A 357 LEU TRP PHE THR TYR ARG LYS ASN PHE PRO ALA ILE GLY SEQRES 6 A 357 GLY THR GLY PRO THR SER ASP THR GLY TRP GLY CYS MET SEQRES 7 A 357 LEU ARG CYS GLY GLN MET ILE PHE ALA GLN ALA LEU VAL SEQRES 8 A 357 CYS ARG HIS LEU GLY ARG ASP TRP ARG TRP THR GLN ARG SEQRES 9 A 357 LYS ARG GLN PRO ASP SER TYR PHE SER VAL LEU ASN ALA SEQRES 10 A 357 PHE ILE ASP ARG LYS ASP SER TYR TYR SER ILE HIS GLN SEQRES 11 A 357 ILE ALA GLN MET GLY VAL GLY GLU GLY LYS SER ILE GLY SEQRES 12 A 357 GLN TRP TYR GLY PRO ASN THR VAL ALA GLN VAL LEU LYS SEQRES 13 A 357 LYS LEU ALA VAL PHE ASP THR TRP SER SER LEU ALA VAL SEQRES 14 A 357 HIS ILE ALA MET ASP ASN THR VAL VAL MET GLU GLU ILE SEQRES 15 A 357 ARG ARG LEU CYS ARG THR SER VAL PRO CYS ALA GLY ALA SEQRES 16 A 357 THR ALA PHE PRO ALA ASP SER ASP ARG HIS CYS ASN GLY SEQRES 17 A 357 PHE PRO ALA GLY ALA GLU VAL THR ASN ARG PRO SER PRO SEQRES 18 A 357 TRP ARG PRO LEU VAL LEU LEU ILE PRO LEU ARG LEU GLY SEQRES 19 A 357 LEU THR ASP ILE ASN GLU ALA TYR VAL GLU THR LEU LYS SEQRES 20 A 357 HIS CYS PHE MET MET PRO GLN SER LEU GLY VAL ILE GLY SEQRES 21 A 357 GLY LYS PRO ASN SER ALA HIS TYR PHE ILE GLY TYR VAL SEQRES 22 A 357 GLY GLU GLU LEU ILE TYR LEU ASP PRO ALA THR THR GLN SEQRES 23 A 357 PRO ALA VAL GLU PRO THR ASP GLY CYS PHE ILE PRO ASP SEQRES 24 A 357 GLU SER PHE HIS CYS GLN HIS PRO PRO CYS ARG MET SER SEQRES 25 A 357 ILE ALA GLU LEU ASP PRO SER ILE ALA VAL GLY PHE PHE SEQRES 26 A 357 CYS LYS THR GLU ASP ASP PHE ASN ASP TRP CYS GLN GLN SEQRES 27 A 357 VAL LYS LYS LEU SER LEU LEU GLY GLY ALA LEU PRO MET SEQRES 28 A 357 PHE GLU LEU VAL GLU GLN SEQRES 1 B 125 GLY PRO LEU GLY SER MET PRO SER GLU LYS THR PHE LYS SEQRES 2 B 125 GLN ARG ARG SER PHE GLU GLN ARG VAL GLU ASP VAL ARG SEQRES 3 B 125 LEU ILE ARG GLU GLN HIS PRO THR LYS ILE PRO VAL ILE SEQRES 4 B 125 ILE GLU ARG TYR LYS GLY GLU LYS GLN LEU PRO VAL LEU SEQRES 5 B 125 ASP LYS THR LYS PHE LEU VAL PRO ASP HIS VAL ASN MET SEQRES 6 B 125 SER GLU LEU ILE LYS ILE ILE ARG ARG ARG LEU GLN LEU SEQRES 7 B 125 ASN ALA ASN GLN ALA PHE PHE LEU LEU VAL ASN GLY HIS SEQRES 8 B 125 SER MET VAL SER VAL SER THR PRO ILE SER GLU VAL TYR SEQRES 9 B 125 GLU SER GLU ARG ASP GLU ASP GLY PHE LEU TYR MET VAL SEQRES 10 B 125 TYR ALA SER GLN GLU THR PHE GLY FORMUL 3 HOH *314(H2 O) HELIX 1 1 ARG A 12 GLU A 17 5 6 HELIX 2 2 GLU A 38 ARG A 49 1 12 HELIX 3 3 ALA A 60 THR A 64 5 5 HELIX 4 4 GLY A 73 LEU A 92 1 20 HELIX 5 5 PRO A 105 ALA A 114 1 10 HELIX 6 6 SER A 124 GLU A 135 1 12 HELIX 7 7 GLY A 144 VAL A 157 1 14 HELIX 8 8 MET A 176 ARG A 184 1 9 HELIX 9 9 ASN A 236 CYS A 246 1 11 HELIX 10 10 ASP A 296 HIS A 300 5 5 HELIX 11 11 ALA A 311 LEU A 313 5 3 HELIX 12 12 THR A 325 LEU A 339 1 15 HELIX 13 13 THR B 6 ARG B 11 1 6 HELIX 14 14 SER B 12 HIS B 27 1 16 HELIX 15 15 ASN B 59 LEU B 71 1 13 HELIX 16 16 PRO B 94 ARG B 103 1 10 SHEET 1 A 7 ARG A 31 TYR A 33 0 SHEET 2 A 7 VAL A 26 ILE A 28 -1 N VAL A 26 O TYR A 33 SHEET 3 A 7 SER A 262 VAL A 270 -1 O TYR A 269 N TRP A 27 SHEET 4 A 7 SER A 252 LYS A 259 -1 N VAL A 255 O PHE A 266 SHEET 5 A 7 SER A 316 CYS A 323 -1 O GLY A 320 N LEU A 253 SHEET 6 A 7 LEU A 222 ARG A 229 -1 N ILE A 226 O VAL A 319 SHEET 7 A 7 ALA A 165 ILE A 168 1 N ALA A 165 O VAL A 223 SHEET 1 B 5 ARG A 31 TYR A 33 0 SHEET 2 B 5 VAL A 26 ILE A 28 -1 N VAL A 26 O TYR A 33 SHEET 3 B 5 SER A 262 VAL A 270 -1 O TYR A 269 N TRP A 27 SHEET 4 B 5 GLU A 273 LEU A 277 -1 O ILE A 275 N GLY A 268 SHEET 5 B 5 CYS A 306 SER A 309 -1 O MET A 308 N LEU A 274 SHEET 1 C 2 TYR A 54 LYS A 56 0 SHEET 2 C 2 THR A 282 PRO A 284 1 O GLN A 283 N TYR A 54 SHEET 1 D 2 THR A 173 VAL A 175 0 SHEET 2 D 2 GLU A 350 VAL A 352 1 O VAL A 352 N VAL A 174 SHEET 1 E 4 LYS B 51 PRO B 55 0 SHEET 2 E 4 LYS B 30 ARG B 37 -1 N ILE B 31 O VAL B 54 SHEET 3 E 4 LEU B 109 ALA B 114 1 O LEU B 109 N ILE B 34 SHEET 4 E 4 PHE B 80 LEU B 82 -1 N LEU B 82 O VAL B 112 CRYST1 47.475 91.812 102.594 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021064 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010892 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009747 0.00000 MASTER 377 0 0 16 20 0 0 6 0 0 0 38 END