HEADER PROTEIN TRANSPORT 27-APR-07 2YXR TITLE THE PLUG DOMAIN OF THE SECY PROTEIN STABLIZES THE CLOSED STATE OF THE TITLE 2 TRANSLOCATION CHANNEL AND MAINTAINS A MEMBRANE SEAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREPROTEIN TRANSLOCASE SUBUNIT SECY; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA HOMOLOG; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PREPROTEIN TRANSLOCASE SUBUNIT SECE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT HOMOLOG; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PREPROTEIN TRANSLOCASE SECG SUBUNIT; COMPND 13 CHAIN: C; COMPND 14 SYNONYM: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA HOMOLOG; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: SECY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 12 ORGANISM_TAXID: 2190; SOURCE 13 GENE: SECE; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PBAD; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 21 ORGANISM_TAXID: 2190; SOURCE 22 GENE: SECG; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS TRANSLOCON, PROTEIN TRANSLOCATION, SIGNAL PEPTIDE, MEMBRANE PROTEIN, KEYWDS 2 PROTEIN SECRETION, PRL MUTATION, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR W.LI,S.SCHULMAN REVDAT 3 13-JUL-11 2YXR 1 VERSN REVDAT 2 24-FEB-09 2YXR 1 VERSN REVDAT 1 14-AUG-07 2YXR 0 JRNL AUTH W.LI,S.SCHULMAN,D.BOYD,K.ERLANDSON,J.BECKWITH,T.A.RAPOPORT JRNL TITL THE PLUG DOMAIN OF THE SECY PROTEIN STABILIZES THE CLOSED JRNL TITL 2 STATE OF THE TRANSLOCATION CHANNEL AND MAINTAINS A MEMBRANE JRNL TITL 3 SEAL JRNL REF MOL.CELL V. 26 511 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17531803 JRNL DOI 10.1016/J.MOLCEL.2007.05.002 REMARK 2 REMARK 2 RESOLUTION. 3.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0026 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.800 REMARK 3 COMPLETENESS FOR RANGE (%) : 65.7 REMARK 3 NUMBER OF REFLECTIONS : 8359 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.300 REMARK 3 R VALUE (WORKING SET) : 0.298 REMARK 3 FREE R VALUE : 0.335 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 465 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 131 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 14.66 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 9 REMARK 3 BIN FREE R VALUE : 0.5180 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3999 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 110.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 105.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.96000 REMARK 3 B22 (A**2) : -5.49000 REMARK 3 B33 (A**2) : 0.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.976 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.717 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 103.673 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.869 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.863 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4086 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5540 ; 1.181 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 515 ; 5.443 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 129 ;40.155 ;23.023 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 726 ;20.640 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.463 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 668 ; 0.073 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2905 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2261 ; 0.247 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2881 ; 0.319 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 151 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.231 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2640 ; 0.512 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4162 ; 0.918 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1655 ; 0.433 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1378 ; 0.729 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 433 REMARK 3 RESIDUE RANGE : B 2 B 66 REMARK 3 RESIDUE RANGE : C 21 C 52 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7141 -28.5331 -18.2369 REMARK 3 T TENSOR REMARK 3 T11: -0.2704 T22: 0.1607 REMARK 3 T33: -0.3028 T12: -0.0395 REMARK 3 T13: -0.0037 T23: 0.0016 REMARK 3 L TENSOR REMARK 3 L11: 2.3500 L22: 1.9442 REMARK 3 L33: 1.7097 L12: 0.3536 REMARK 3 L13: 0.4189 L23: -0.0753 REMARK 3 S TENSOR REMARK 3 S11: 0.0681 S12: 0.2729 S13: 0.4283 REMARK 3 S21: -0.1253 S22: 0.0446 S23: 0.0137 REMARK 3 S31: -0.2427 S32: 0.1603 S33: -0.1127 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2YXR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB027267. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14742 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.00 REMARK 200 R MERGE FOR SHELL (I) : 0.73900 REMARK 200 R SYM FOR SHELL (I) : 0.73900 REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: RESOLVE REMARK 200 STARTING MODEL: 1RHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40-55% PEG400, 50MM GLYCINE-HCL, PH REMARK 280 9.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.25500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 75.18000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.25500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 75.18000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 434 REMARK 465 ASN A 435 REMARK 465 LYS A 436 REMARK 465 MET B 0 REMARK 465 LYS B 1 REMARK 465 PRO B 67 REMARK 465 PRO B 68 REMARK 465 THR B 69 REMARK 465 THR B 70 REMARK 465 PRO B 71 REMARK 465 ARG B 72 REMARK 465 VAL B 73 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 LYS C 3 REMARK 465 ARG C 4 REMARK 465 GLU C 5 REMARK 465 GLU C 6 REMARK 465 THR C 7 REMARK 465 GLY C 8 REMARK 465 LEU C 9 REMARK 465 ALA C 10 REMARK 465 THR C 11 REMARK 465 SER C 12 REMARK 465 ALA C 13 REMARK 465 GLY C 14 REMARK 465 LEU C 15 REMARK 465 ILE C 16 REMARK 465 ARG C 17 REMARK 465 TYR C 18 REMARK 465 MET C 19 REMARK 465 ASP C 20 REMARK 465 LEU C 53 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 4 37.54 -68.54 REMARK 500 LYS A 19 -169.19 -64.16 REMARK 500 ALA A 48 79.97 -67.53 REMARK 500 ALA A 50 56.32 -91.72 REMARK 500 GLN A 51 -78.37 -69.61 REMARK 500 ALA A 54 39.99 -81.98 REMARK 500 PHE A 56 -70.37 -39.73 REMARK 500 LEU A 70 19.88 -172.59 REMARK 500 ILE A 71 -13.98 108.37 REMARK 500 THR A 72 -98.81 -60.82 REMARK 500 ILE A 75 -32.87 -22.99 REMARK 500 PRO A 77 -18.92 -36.63 REMARK 500 LEU A 88 -71.07 -68.99 REMARK 500 VAL A 89 -1.95 -54.82 REMARK 500 SER A 91 26.39 -75.92 REMARK 500 ILE A 94 50.69 -143.58 REMARK 500 GLN A 95 131.80 -29.35 REMARK 500 SER A 99 -66.42 -6.29 REMARK 500 GLU A 102 -80.74 -61.79 REMARK 500 GLN A 108 -73.47 -66.66 REMARK 500 LEU A 135 30.90 -80.03 REMARK 500 THR A 136 99.68 -50.73 REMARK 500 PRO A 137 -36.95 -32.85 REMARK 500 ILE A 145 -81.18 -52.36 REMARK 500 ILE A 147 -77.70 -50.04 REMARK 500 TYR A 164 -8.73 -141.08 REMARK 500 LEU A 172 -73.48 -51.70 REMARK 500 PRO A 189 -86.00 -58.48 REMARK 500 GLU A 190 39.58 -74.57 REMARK 500 PRO A 205 111.04 -31.04 REMARK 500 ALA A 211 -74.28 -41.64 REMARK 500 HIS A 237 148.54 -32.94 REMARK 500 ARG A 239 -15.99 74.86 REMARK 500 ILE A 240 -151.80 -83.90 REMARK 500 VAL A 244 -95.42 -136.71 REMARK 500 LYS A 246 44.49 173.60 REMARK 500 ASN A 256 -73.75 -65.34 REMARK 500 LEU A 276 48.13 -76.14 REMARK 500 TYR A 277 -57.95 -135.99 REMARK 500 MET A 279 26.26 -150.42 REMARK 500 PRO A 282 59.79 -68.82 REMARK 500 TYR A 287 -89.29 -88.69 REMARK 500 GLU A 288 108.19 67.08 REMARK 500 ASP A 294 145.72 177.88 REMARK 500 TYR A 299 -1.32 -59.26 REMARK 500 TYR A 304 -168.46 -74.24 REMARK 500 LEU A 306 -68.80 -127.09 REMARK 500 SER A 311 35.29 -58.82 REMARK 500 ASP A 312 54.02 -175.62 REMARK 500 THR A 338 -103.97 3.07 REMARK 500 REMARK 500 THIS ENTRY HAS 76 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RHZ RELATED DB: PDB REMARK 900 PROTEIN TRANSLOCATION CHANNEL REMARK 900 RELATED ID: 1RH5 RELATED DB: PDB REMARK 900 PROTEIN TRANSLOCATION CHANNEL REMARK 900 RELATED ID: 2YXQ RELATED DB: PDB REMARK 900 PROTEIN TRANSLOCATION CHANNEL REMARK 999 REMARK 999 SEQUENCE REMARK 999 DELETION OF 57-67 AND SUBSTITUTION WITH ONE GLY DBREF 2YXR A 1 436 UNP Q60175 SECY_METJA 1 436 DBREF 2YXR B 0 73 UNP Q57817 SECE_METJA 1 74 DBREF 2YXR C 1 53 UNP P60460 SECG_METJA 1 53 SEQADV 2YXR A UNP Q60175 GLU 57 DELETION SEQADV 2YXR A UNP Q60175 PHE 58 DELETION SEQADV 2YXR A UNP Q60175 TRP 59 DELETION SEQADV 2YXR A UNP Q60175 GLN 60 DELETION SEQADV 2YXR A UNP Q60175 THR 61 DELETION SEQADV 2YXR A UNP Q60175 ILE 62 DELETION SEQADV 2YXR A UNP Q60175 THR 63 DELETION SEQADV 2YXR A UNP Q60175 ALA 64 DELETION SEQADV 2YXR A UNP Q60175 SER 65 DELETION SEQADV 2YXR A UNP Q60175 ARG 66 DELETION SEQADV 2YXR GLY A 67 UNP Q60175 ILE 67 SEE REMARK 999 SEQRES 1 A 426 MET LYS LYS LEU ILE PRO ILE LEU GLU LYS ILE PRO GLU SEQRES 2 A 426 VAL GLU LEU PRO VAL LYS GLU ILE THR PHE LYS GLU LYS SEQRES 3 A 426 LEU LYS TRP THR GLY ILE VAL LEU VAL LEU TYR PHE ILE SEQRES 4 A 426 MET GLY CYS ILE ASP VAL TYR THR ALA GLY ALA GLN ILE SEQRES 5 A 426 PRO ALA ILE PHE GLY GLY THR LEU ILE THR LEU GLY ILE SEQRES 6 A 426 GLY PRO ILE VAL THR ALA GLY ILE ILE MET GLN LEU LEU SEQRES 7 A 426 VAL GLY SER GLY ILE ILE GLN MET ASP LEU SER ILE PRO SEQRES 8 A 426 GLU ASN ARG ALA LEU PHE GLN GLY CYS GLN LYS LEU LEU SEQRES 9 A 426 SER ILE ILE MET CYS PHE VAL GLU ALA VAL LEU PHE VAL SEQRES 10 A 426 GLY ALA GLY ALA PHE GLY ILE LEU THR PRO LEU LEU ALA SEQRES 11 A 426 PHE LEU VAL ILE ILE GLN ILE ALA PHE GLY SER ILE ILE SEQRES 12 A 426 LEU ILE TYR LEU ASP GLU ILE VAL SER LYS TYR GLY ILE SEQRES 13 A 426 GLY SER GLY ILE GLY LEU PHE ILE ALA ALA GLY VAL SER SEQRES 14 A 426 GLN THR ILE PHE VAL GLY ALA LEU GLY PRO GLU GLY TYR SEQRES 15 A 426 LEU TRP LYS PHE LEU ASN SER LEU ILE GLN GLY VAL PRO SEQRES 16 A 426 ASN ILE GLU TYR ILE ALA PRO ILE ILE GLY THR ILE ILE SEQRES 17 A 426 VAL PHE LEU MET VAL VAL TYR ALA GLU CYS MET ARG VAL SEQRES 18 A 426 GLU ILE PRO LEU ALA HIS GLY ARG ILE LYS GLY ALA VAL SEQRES 19 A 426 GLY LYS TYR PRO ILE LYS PHE VAL TYR VAL SER ASN ILE SEQRES 20 A 426 PRO VAL ILE LEU ALA ALA ALA LEU PHE ALA ASN ILE GLN SEQRES 21 A 426 LEU TRP GLY LEU ALA LEU TYR ARG MET GLY ILE PRO ILE SEQRES 22 A 426 LEU GLY HIS TYR GLU GLY GLY ARG ALA VAL ASP GLY ILE SEQRES 23 A 426 ALA TYR TYR LEU SER THR PRO TYR GLY LEU SER SER VAL SEQRES 24 A 426 ILE SER ASP PRO ILE HIS ALA ILE VAL TYR MET ILE ALA SEQRES 25 A 426 MET ILE ILE THR CYS VAL MET PHE GLY ILE PHE TRP VAL SEQRES 26 A 426 GLU THR THR GLY LEU ASP PRO LYS SER MET ALA LYS ARG SEQRES 27 A 426 ILE GLY SER LEU GLY MET ALA ILE LYS GLY PHE ARG LYS SEQRES 28 A 426 SER GLU LYS ALA ILE GLU HIS ARG LEU LYS ARG TYR ILE SEQRES 29 A 426 PRO PRO LEU THR VAL MET SER SER ALA PHE VAL GLY PHE SEQRES 30 A 426 LEU ALA THR ILE ALA ASN PHE ILE GLY ALA LEU GLY GLY SEQRES 31 A 426 GLY THR GLY VAL LEU LEU THR VAL SER ILE VAL TYR ARG SEQRES 32 A 426 MET TYR GLU GLN LEU LEU ARG GLU LYS VAL SER GLU LEU SEQRES 33 A 426 HIS PRO ALA ILE ALA LYS LEU LEU ASN LYS SEQRES 1 B 74 MET LYS THR ASP PHE ASN GLN LYS ILE GLU GLN LEU LYS SEQRES 2 B 74 GLU PHE ILE GLU GLU CYS ARG ARG VAL TRP LEU VAL LEU SEQRES 3 B 74 LYS LYS PRO THR LYS ASP GLU TYR LEU ALA VAL ALA LYS SEQRES 4 B 74 VAL THR ALA LEU GLY ILE SER LEU LEU GLY ILE ILE GLY SEQRES 5 B 74 TYR ILE ILE HIS VAL PRO ALA THR TYR ILE LYS GLY ILE SEQRES 6 B 74 LEU LYS PRO PRO THR THR PRO ARG VAL SEQRES 1 C 53 MET SER LYS ARG GLU GLU THR GLY LEU ALA THR SER ALA SEQRES 2 C 53 GLY LEU ILE ARG TYR MET ASP GLU THR PHE SER LYS ILE SEQRES 3 C 53 ARG VAL LYS PRO GLU HIS VAL ILE GLY VAL THR VAL ALA SEQRES 4 C 53 PHE VAL ILE ILE GLU ALA ILE LEU THR TYR GLY ARG PHE SEQRES 5 C 53 LEU HELIX 1 1 LEU A 4 ILE A 11 1 8 HELIX 2 2 THR A 22 ILE A 43 1 22 HELIX 3 3 ALA A 54 THR A 69 1 6 HELIX 4 4 THR A 72 ILE A 75 5 4 HELIX 5 5 GLY A 76 VAL A 89 1 14 HELIX 6 6 ILE A 100 GLY A 128 1 29 HELIX 7 7 THR A 136 GLY A 165 1 30 HELIX 8 8 SER A 168 GLY A 188 1 21 HELIX 9 9 GLY A 191 GLY A 203 1 13 HELIX 10 10 ASN A 206 MET A 229 1 24 HELIX 11 11 VAL A 252 VAL A 254 5 3 HELIX 12 12 SER A 255 LEU A 276 1 22 HELIX 13 13 GLY A 295 LEU A 300 1 6 HELIX 14 14 ASP A 312 THR A 337 1 26 HELIX 15 15 ASP A 341 SER A 351 1 11 HELIX 16 16 SER A 362 GLY A 396 1 35 HELIX 17 17 GLY A 400 GLU A 425 1 26 HELIX 18 18 THR B 2 TRP B 22 1 21 HELIX 19 19 THR B 29 LEU B 65 1 37 HELIX 20 20 LYS C 29 THR C 48 1 20 SHEET 1 A 2 VAL A 231 ILE A 233 0 SHEET 2 A 2 TYR A 247 ILE A 249 -1 O TYR A 247 N ILE A 233 CRYST1 92.510 150.360 79.850 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010810 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006651 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012523 0.00000 MASTER 400 0 0 20 2 0 0 6 0 0 0 44 END