HEADER PROTEIN TRANSPORT 27-APR-07 2YXQ TITLE THE PLUG DOMAIN OF THE SECY PROTEIN STABLIZES THE CLOSED STATE OF THE TITLE 2 TRANSLOCATION CHANNEL AND MAINTAINS A MEMBRANE SEAL COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREPROTEIN TRANSLOCASE SUBUNIT SECY; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT ALPHA HOMOLOG; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PREPROTEIN TRANSLOCASE SUBUNIT SECE; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PROTEIN TRANSPORT PROTEIN SEC61 GAMMA SUBUNIT HOMOLOG; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: PREPROTEIN TRANSLOCASE SECG SUBUNIT; COMPND 13 CHAIN: C; COMPND 14 SYNONYM: PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT BETA HOMOLOG; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: SECY; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBAD; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 12 ORGANISM_TAXID: 2190; SOURCE 13 GENE: SECE; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PBAD; SOURCE 19 MOL_ID: 3; SOURCE 20 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 21 ORGANISM_TAXID: 2190; SOURCE 22 GENE: SECG; SOURCE 23 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 25 EXPRESSION_SYSTEM_STRAIN: C43; SOURCE 26 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 27 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS PROTEIN TRANSLOCATION, SIGNAL PEPTIDE, MEMBRANE PROTEIN, PROTEIN KEYWDS 2 SECRETION, PRL MUTATION, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR W.LI,S.SCHULMAN REVDAT 3 13-JUL-11 2YXQ 1 VERSN REVDAT 2 24-FEB-09 2YXQ 1 VERSN REVDAT 1 14-AUG-07 2YXQ 0 JRNL AUTH W.LI,S.SCHULMAN,D.BOYD,K.ERLANDSON,J.BECKWITH,T.A.RAPOPORT JRNL TITL THE PLUG DOMAIN OF THE SECY PROTEIN STABILIZES THE CLOSED JRNL TITL 2 STATE OF THE TRANSLOCATION CHANNEL AND MAINTAINS A MEMBRANE JRNL TITL 3 SEAL JRNL REF MOL.CELL V. 26 511 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17531803 JRNL DOI 10.1016/J.MOLCEL.2007.05.002 REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.500 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 70.6 REMARK 3 NUMBER OF REFLECTIONS : 10303 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : FROM 1RHZ REMARK 3 R VALUE (WORKING SET) : 0.301 REMARK 3 FREE R VALUE : 0.317 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 538 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.66 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.4045 REMARK 3 BIN FREE R VALUE : 0.4219 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 26 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4052 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 118.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : -0.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.57200 REMARK 3 B22 (A**2) : 9.89500 REMARK 3 B33 (A**2) : -8.32300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YXQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAY-07. REMARK 100 THE RCSB ID CODE IS RCSB027266. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 200.0 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14678 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 12.000 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : 0.08700 REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 12.00 REMARK 200 R MERGE FOR SHELL (I) : 0.78700 REMARK 200 R SYM FOR SHELL (I) : 0.78700 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: DM REMARK 200 STARTING MODEL: 1RHZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 40-55% PEG400, 50MM GLYCINE-HCL , PH9, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 46.11750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.24450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 46.11750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.24450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 6020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 434 REMARK 465 ASN A 435 REMARK 465 LYS A 436 REMARK 465 MET B 0 REMARK 465 LYS B 1 REMARK 465 PRO B 67 REMARK 465 PRO B 68 REMARK 465 THR B 69 REMARK 465 THR B 70 REMARK 465 PRO B 71 REMARK 465 ARG B 72 REMARK 465 VAL B 73 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 LYS C 3 REMARK 465 ARG C 4 REMARK 465 GLU C 5 REMARK 465 GLU C 6 REMARK 465 THR C 7 REMARK 465 GLY C 8 REMARK 465 LEU C 9 REMARK 465 ALA C 10 REMARK 465 THR C 11 REMARK 465 SER C 12 REMARK 465 ALA C 13 REMARK 465 GLY C 14 REMARK 465 LEU C 15 REMARK 465 ILE C 16 REMARK 465 ARG C 17 REMARK 465 TYR C 18 REMARK 465 MET C 19 REMARK 465 ASP C 20 REMARK 465 LEU C 53 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 342 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 4 34.24 -66.68 REMARK 500 PRO A 6 -71.75 -57.94 REMARK 500 PRO A 12 160.72 -48.88 REMARK 500 TYR A 37 -71.60 -66.31 REMARK 500 THR A 47 114.33 -165.35 REMARK 500 ALA A 50 42.90 -70.69 REMARK 500 PRO A 53 134.55 -12.24 REMARK 500 ARG A 66 -151.59 48.06 REMARK 500 ILE A 67 95.91 73.81 REMARK 500 LEU A 88 -71.72 -69.00 REMARK 500 VAL A 89 0.25 -55.81 REMARK 500 ILE A 93 -35.02 -32.54 REMARK 500 ILE A 94 57.42 -140.89 REMARK 500 GLN A 95 129.87 -36.45 REMARK 500 SER A 99 -65.59 -2.12 REMARK 500 PRO A 101 -17.66 -49.50 REMARK 500 GLU A 102 -78.75 -65.30 REMARK 500 GLN A 108 -82.87 -69.87 REMARK 500 LEU A 135 45.18 -86.31 REMARK 500 THR A 136 101.44 -58.93 REMARK 500 PRO A 137 -35.91 -31.61 REMARK 500 VAL A 143 -72.49 -51.51 REMARK 500 ILE A 144 -49.64 -28.50 REMARK 500 ILE A 145 -82.60 -47.95 REMARK 500 ILE A 147 -73.12 -43.34 REMARK 500 LYS A 163 13.32 -142.17 REMARK 500 TYR A 164 -4.43 -147.62 REMARK 500 ILE A 170 -76.30 -33.08 REMARK 500 LEU A 172 -74.26 -58.67 REMARK 500 THR A 181 -36.14 -39.62 REMARK 500 PRO A 189 -87.67 -55.52 REMARK 500 GLU A 190 30.77 -67.59 REMARK 500 PRO A 205 103.17 -23.26 REMARK 500 ALA A 211 -72.34 -47.03 REMARK 500 ARG A 239 -29.81 84.41 REMARK 500 ILE A 240 -149.01 -61.00 REMARK 500 VAL A 244 -115.95 -134.02 REMARK 500 LYS A 246 16.57 -167.05 REMARK 500 TYR A 247 120.06 -13.49 REMARK 500 SER A 255 38.66 -92.52 REMARK 500 ASN A 256 -85.15 -71.64 REMARK 500 ILE A 257 -35.72 -37.30 REMARK 500 LEU A 276 45.22 -80.35 REMARK 500 TYR A 277 -63.85 -133.73 REMARK 500 ARG A 278 31.19 -84.01 REMARK 500 MET A 279 33.82 -160.68 REMARK 500 PRO A 282 61.53 -67.32 REMARK 500 TYR A 287 -90.94 -79.77 REMARK 500 GLU A 288 111.85 68.66 REMARK 500 TYR A 304 -170.19 -62.24 REMARK 500 REMARK 500 THIS ENTRY HAS 88 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG A 66 12.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1RHZ RELATED DB: PDB REMARK 900 PROTEIN TRANSLOCATION CHANNEL REMARK 900 RELATED ID: 1RH5 RELATED DB: PDB REMARK 900 PROTEIN TRANSLOCATION CHANNEL REMARK 999 REMARK 999 SEQUENCE REMARK 999 DELETION OF 60-65 AND SUBSTITUTION WITH ONE GLY DBREF 2YXQ A 1 436 UNP Q60175 SECY_METJA 1 436 DBREF 2YXQ B 0 73 UNP Q57817 SECE_METJA 1 74 DBREF 2YXQ C 1 53 UNP P60460 SECG_METJA 1 53 SEQADV 2YXQ A UNP Q60175 GLN 60 DELETION SEQADV 2YXQ A UNP Q60175 THR 61 DELETION SEQADV 2YXQ A UNP Q60175 ILE 62 DELETION SEQADV 2YXQ A UNP Q60175 THR 63 DELETION SEQADV 2YXQ A UNP Q60175 ALA 64 DELETION SEQADV 2YXQ GLY A 65 UNP Q60175 SER 65 SEE REMARK 999 SEQRES 1 A 431 MET LYS LYS LEU ILE PRO ILE LEU GLU LYS ILE PRO GLU SEQRES 2 A 431 VAL GLU LEU PRO VAL LYS GLU ILE THR PHE LYS GLU LYS SEQRES 3 A 431 LEU LYS TRP THR GLY ILE VAL LEU VAL LEU TYR PHE ILE SEQRES 4 A 431 MET GLY CYS ILE ASP VAL TYR THR ALA GLY ALA GLN ILE SEQRES 5 A 431 PRO ALA ILE PHE GLU PHE TRP GLY ARG ILE GLY THR LEU SEQRES 6 A 431 ILE THR LEU GLY ILE GLY PRO ILE VAL THR ALA GLY ILE SEQRES 7 A 431 ILE MET GLN LEU LEU VAL GLY SER GLY ILE ILE GLN MET SEQRES 8 A 431 ASP LEU SER ILE PRO GLU ASN ARG ALA LEU PHE GLN GLY SEQRES 9 A 431 CYS GLN LYS LEU LEU SER ILE ILE MET CYS PHE VAL GLU SEQRES 10 A 431 ALA VAL LEU PHE VAL GLY ALA GLY ALA PHE GLY ILE LEU SEQRES 11 A 431 THR PRO LEU LEU ALA PHE LEU VAL ILE ILE GLN ILE ALA SEQRES 12 A 431 PHE GLY SER ILE ILE LEU ILE TYR LEU ASP GLU ILE VAL SEQRES 13 A 431 SER LYS TYR GLY ILE GLY SER GLY ILE GLY LEU PHE ILE SEQRES 14 A 431 ALA ALA GLY VAL SER GLN THR ILE PHE VAL GLY ALA LEU SEQRES 15 A 431 GLY PRO GLU GLY TYR LEU TRP LYS PHE LEU ASN SER LEU SEQRES 16 A 431 ILE GLN GLY VAL PRO ASN ILE GLU TYR ILE ALA PRO ILE SEQRES 17 A 431 ILE GLY THR ILE ILE VAL PHE LEU MET VAL VAL TYR ALA SEQRES 18 A 431 GLU CYS MET ARG VAL GLU ILE PRO LEU ALA HIS GLY ARG SEQRES 19 A 431 ILE LYS GLY ALA VAL GLY LYS TYR PRO ILE LYS PHE VAL SEQRES 20 A 431 TYR VAL SER ASN ILE PRO VAL ILE LEU ALA ALA ALA LEU SEQRES 21 A 431 PHE ALA ASN ILE GLN LEU TRP GLY LEU ALA LEU TYR ARG SEQRES 22 A 431 MET GLY ILE PRO ILE LEU GLY HIS TYR GLU GLY GLY ARG SEQRES 23 A 431 ALA VAL ASP GLY ILE ALA TYR TYR LEU SER THR PRO TYR SEQRES 24 A 431 GLY LEU SER SER VAL ILE SER ASP PRO ILE HIS ALA ILE SEQRES 25 A 431 VAL TYR MET ILE ALA MET ILE ILE THR CYS VAL MET PHE SEQRES 26 A 431 GLY ILE PHE TRP VAL GLU THR THR GLY LEU ASP PRO LYS SEQRES 27 A 431 SER MET ALA LYS ARG ILE GLY SER LEU GLY MET ALA ILE SEQRES 28 A 431 LYS GLY PHE ARG LYS SER GLU LYS ALA ILE GLU HIS ARG SEQRES 29 A 431 LEU LYS ARG TYR ILE PRO PRO LEU THR VAL MET SER SER SEQRES 30 A 431 ALA PHE VAL GLY PHE LEU ALA THR ILE ALA ASN PHE ILE SEQRES 31 A 431 GLY ALA LEU GLY GLY GLY THR GLY VAL LEU LEU THR VAL SEQRES 32 A 431 SER ILE VAL TYR ARG MET TYR GLU GLN LEU LEU ARG GLU SEQRES 33 A 431 LYS VAL SER GLU LEU HIS PRO ALA ILE ALA LYS LEU LEU SEQRES 34 A 431 ASN LYS SEQRES 1 B 74 MET LYS THR ASP PHE ASN GLN LYS ILE GLU GLN LEU LYS SEQRES 2 B 74 GLU PHE ILE GLU GLU CYS ARG ARG VAL TRP LEU VAL LEU SEQRES 3 B 74 LYS LYS PRO THR LYS ASP GLU TYR LEU ALA VAL ALA LYS SEQRES 4 B 74 VAL THR ALA LEU GLY ILE SER LEU LEU GLY ILE ILE GLY SEQRES 5 B 74 TYR ILE ILE HIS VAL PRO ALA THR TYR ILE LYS GLY ILE SEQRES 6 B 74 LEU LYS PRO PRO THR THR PRO ARG VAL SEQRES 1 C 53 MET SER LYS ARG GLU GLU THR GLY LEU ALA THR SER ALA SEQRES 2 C 53 GLY LEU ILE ARG TYR MET ASP GLU THR PHE SER LYS ILE SEQRES 3 C 53 ARG VAL LYS PRO GLU HIS VAL ILE GLY VAL THR VAL ALA SEQRES 4 C 53 PHE VAL ILE ILE GLU ALA ILE LEU THR TYR GLY ARG PHE SEQRES 5 C 53 LEU HELIX 1 1 LEU A 4 ILE A 11 1 8 HELIX 2 2 THR A 22 ILE A 43 1 22 HELIX 3 3 PRO A 53 PHE A 58 1 6 HELIX 4 4 ILE A 75 VAL A 89 1 15 HELIX 5 5 ILE A 100 ALA A 129 1 30 HELIX 6 6 THR A 136 GLY A 165 1 30 HELIX 7 7 SER A 168 GLY A 188 1 21 HELIX 8 8 GLY A 191 GLY A 203 1 13 HELIX 9 9 ASN A 206 MET A 229 1 24 HELIX 10 10 VAL A 252 VAL A 254 5 3 HELIX 11 11 SER A 255 LEU A 276 1 22 HELIX 12 12 ASP A 294 LEU A 300 1 7 HELIX 13 13 ASP A 312 GLU A 336 1 25 HELIX 14 14 ASP A 341 LEU A 352 1 12 HELIX 15 15 SER A 362 GLY A 396 1 35 HELIX 16 16 GLY A 400 GLU A 425 1 26 HELIX 17 17 THR B 2 TRP B 22 1 21 HELIX 18 18 THR B 29 LEU B 65 1 37 HELIX 19 19 PRO C 30 THR C 48 1 19 SHEET 1 A 2 VAL A 231 GLU A 232 0 SHEET 2 A 2 PRO A 248 ILE A 249 -1 O ILE A 249 N VAL A 231 CRYST1 92.235 148.489 81.072 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010842 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006735 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012335 0.00000 MASTER 390 0 0 19 2 0 0 6 0 0 0 45 END