HEADER RNA BINDING PROTEIN 05-APR-07 2YU6 TITLE SOLUTION STRUCTURE OF THE YTH DOMAIN IN YTH DOMAIN- TITLE 2 CONTAINING PROTEIN 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: YTH DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: YTH DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: YTHDC2; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060508-16; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS NMR, YTH DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL KEYWDS 2 PROJECT ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, KEYWDS 3 RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, RNA KEYWDS 4 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.ENDO,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TARADA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI) REVDAT 2 24-FEB-09 2YU6 1 VERSN REVDAT 1 09-OCT-07 2YU6 0 JRNL AUTH R.ENDO,Y.MUTO,M.INOUE,T.KIGAWA,M.SHIROUZU,T.TARADA, JRNL AUTH 2 S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE YTH DOMAIN IN YTH JRNL TITL 2 DOMAIN-CONTAINING PROTEIN 2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YU6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027138. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS-HCL (PH REMARK 210 7.0); 100MM NACL; 1MM D-DTT; REMARK 210 0.02% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, TARGET REMARK 210 FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 34 3.56 -69.80 REMARK 500 1 SER A 59 134.30 -38.56 REMARK 500 1 GLN A 63 -19.90 -47.82 REMARK 500 1 ARG A 74 -38.58 -38.08 REMARK 500 1 GLN A 102 -36.68 -37.49 REMARK 500 1 PRO A 110 3.95 -69.68 REMARK 500 1 ASN A 114 49.44 32.96 REMARK 500 1 LYS A 116 142.62 -37.44 REMARK 500 1 GLN A 118 -39.37 -37.22 REMARK 500 1 ILE A 119 71.81 -68.40 REMARK 500 2 ASN A 20 -38.85 -38.28 REMARK 500 2 PRO A 34 4.32 -69.77 REMARK 500 2 PRO A 110 1.15 -69.74 REMARK 500 2 ASN A 114 33.06 37.19 REMARK 500 3 PRO A 34 3.49 -69.77 REMARK 500 3 GLN A 63 -19.46 -48.18 REMARK 500 3 GLN A 78 -61.06 -103.33 REMARK 500 3 PRO A 110 3.17 -69.75 REMARK 500 3 ASP A 113 46.56 74.85 REMARK 500 3 ASN A 114 34.07 34.21 REMARK 500 3 LYS A 116 147.30 -36.63 REMARK 500 3 GLN A 118 -31.95 -39.46 REMARK 500 4 PRO A 34 2.28 -69.79 REMARK 500 4 LYS A 39 -72.15 -64.23 REMARK 500 4 LEU A 40 -39.14 -39.84 REMARK 500 4 SER A 59 150.63 -34.39 REMARK 500 4 TRP A 80 137.29 -171.06 REMARK 500 4 ILE A 94 -61.87 -93.97 REMARK 500 4 GLN A 118 -39.78 -34.61 REMARK 500 5 SER A 5 156.77 -39.11 REMARK 500 5 SER A 6 106.12 -161.23 REMARK 500 5 PRO A 34 5.24 -69.79 REMARK 500 5 ARG A 38 -39.13 -34.23 REMARK 500 5 TRP A 80 136.80 -170.45 REMARK 500 5 ASN A 114 37.73 35.84 REMARK 500 5 ILE A 119 72.36 -66.70 REMARK 500 6 SER A 6 37.26 -99.32 REMARK 500 6 PRO A 34 2.81 -69.77 REMARK 500 6 LYS A 39 -72.98 -69.90 REMARK 500 6 SER A 59 141.03 -34.59 REMARK 500 6 ILE A 94 -60.87 -106.67 REMARK 500 6 GLN A 102 -34.67 -39.02 REMARK 500 6 ASN A 112 58.60 -102.66 REMARK 500 7 SER A 2 52.95 35.09 REMARK 500 7 SER A 5 83.48 -57.15 REMARK 500 7 PRO A 34 2.66 -69.75 REMARK 500 7 ARG A 38 -72.80 -43.73 REMARK 500 7 GLU A 75 119.48 -39.77 REMARK 500 7 ILE A 94 -60.11 -100.83 REMARK 500 7 PRO A 110 1.55 -69.74 REMARK 500 7 LYS A 116 148.30 -38.77 REMARK 500 7 GLN A 118 -34.31 -34.53 REMARK 500 7 PRO A 128 5.97 -69.75 REMARK 500 7 GLN A 136 -18.89 -48.80 REMARK 500 8 ASN A 20 -39.77 -39.44 REMARK 500 8 SER A 59 150.95 -34.57 REMARK 500 8 GLU A 75 124.73 -35.83 REMARK 500 8 ASP A 79 96.63 -48.12 REMARK 500 8 ASP A 113 44.02 70.57 REMARK 500 8 ASN A 114 32.10 35.52 REMARK 500 9 GLN A 26 -60.45 -91.79 REMARK 500 9 PRO A 34 1.40 -69.81 REMARK 500 9 PRO A 110 1.83 -69.76 REMARK 500 9 ASN A 114 29.68 41.47 REMARK 500 9 GLN A 118 -35.08 -39.52 REMARK 500 10 GLN A 26 -62.56 -97.81 REMARK 500 10 PRO A 34 4.48 -69.76 REMARK 500 10 ARG A 38 -34.85 -34.29 REMARK 500 10 ASP A 79 105.30 -47.63 REMARK 500 10 LEU A 85 160.85 -41.45 REMARK 500 10 ILE A 94 -62.13 -92.94 REMARK 500 10 ASN A 114 35.98 36.61 REMARK 500 10 GLN A 118 -30.36 -39.96 REMARK 500 11 PRO A 34 0.20 -69.74 REMARK 500 11 PHE A 101 -35.46 -36.55 REMARK 500 11 ASN A 114 37.04 35.95 REMARK 500 11 GLN A 118 -39.99 -36.29 REMARK 500 11 ILE A 119 72.55 -67.84 REMARK 500 12 PRO A 34 4.39 -69.78 REMARK 500 12 ARG A 38 -72.68 -35.62 REMARK 500 12 SER A 77 177.76 -56.92 REMARK 500 12 ASP A 79 113.66 -39.73 REMARK 500 12 ASN A 114 30.46 36.83 REMARK 500 13 GLN A 26 -60.47 -99.50 REMARK 500 13 PRO A 34 4.77 -69.81 REMARK 500 13 ARG A 38 -36.07 -35.39 REMARK 500 13 SER A 59 133.64 -171.94 REMARK 500 13 GLN A 63 -18.29 -49.72 REMARK 500 13 ARG A 74 -35.18 -33.48 REMARK 500 13 GLN A 78 -57.18 -121.52 REMARK 500 13 LEU A 85 160.60 -41.31 REMARK 500 13 ASN A 114 32.38 34.91 REMARK 500 14 SER A 2 41.11 38.49 REMARK 500 14 ARG A 38 -73.67 -42.20 REMARK 500 14 GLN A 63 -19.59 -48.06 REMARK 500 14 LEU A 85 163.87 -42.09 REMARK 500 14 PRO A 110 3.45 -69.74 REMARK 500 14 ASN A 114 45.60 33.73 REMARK 500 15 SER A 2 104.15 -51.19 REMARK 500 15 SER A 3 82.75 -68.64 REMARK 500 15 SER A 5 45.44 -91.61 REMARK 500 15 PRO A 34 4.42 -69.78 REMARK 500 15 PRO A 110 4.23 -69.73 REMARK 500 15 ASN A 114 39.53 34.31 REMARK 500 15 LYS A 116 132.86 -39.56 REMARK 500 15 ILE A 119 70.31 -68.78 REMARK 500 16 GLN A 26 -61.16 -98.76 REMARK 500 16 PRO A 34 1.19 -69.73 REMARK 500 16 ARG A 38 -34.63 -33.28 REMARK 500 16 SER A 59 137.34 -35.46 REMARK 500 16 GLU A 92 77.29 -101.75 REMARK 500 16 ILE A 94 -60.29 -104.89 REMARK 500 16 ASN A 112 51.38 -111.93 REMARK 500 16 ASN A 114 37.35 36.56 REMARK 500 17 ASN A 20 -34.13 -38.68 REMARK 500 17 PRO A 34 4.76 -69.78 REMARK 500 17 ARG A 38 -36.07 -33.40 REMARK 500 17 LYS A 39 -70.04 -72.88 REMARK 500 17 ARG A 74 -36.26 -37.87 REMARK 500 17 PRO A 110 3.14 -69.77 REMARK 500 17 ASN A 112 70.25 -117.41 REMARK 500 17 LYS A 116 157.30 -44.78 REMARK 500 18 GLN A 26 -61.01 -98.87 REMARK 500 18 PRO A 34 4.34 -69.80 REMARK 500 18 GLN A 57 36.02 32.42 REMARK 500 18 GLN A 63 -26.38 -39.38 REMARK 500 18 MET A 68 122.64 -39.98 REMARK 500 18 ARG A 74 -31.83 -37.16 REMARK 500 18 ASP A 79 107.17 -52.41 REMARK 500 18 LEU A 85 152.49 -41.24 REMARK 500 18 PRO A 110 3.49 -69.77 REMARK 500 18 ASN A 114 24.99 40.64 REMARK 500 18 LYS A 116 152.47 -34.89 REMARK 500 19 PRO A 34 0.93 -69.79 REMARK 500 19 SER A 59 109.32 -38.68 REMARK 500 19 ASP A 79 106.15 -42.35 REMARK 500 19 LEU A 85 159.72 -44.85 REMARK 500 19 PRO A 110 2.47 -69.74 REMARK 500 19 ASN A 112 61.72 -117.90 REMARK 500 20 PRO A 34 3.26 -69.73 REMARK 500 20 ARG A 38 -34.95 -38.59 REMARK 500 20 MET A 68 125.61 -39.29 REMARK 500 20 ASP A 79 108.74 -52.32 REMARK 500 20 GLN A 102 -19.91 -48.76 REMARK 500 20 PRO A 110 4.02 -69.79 REMARK 500 20 ASN A 114 50.79 33.74 REMARK 500 20 ILE A 119 72.77 -65.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR DETERMINED REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSS001001522.2 RELATED DB: TARGETDB DBREF 2YU6 A 8 141 UNP Q9H6S0 YTDC2_HUMAN 529 662 SEQADV 2YU6 GLY A 1 UNP Q9H6S0 EXPRESSION TAG SEQADV 2YU6 SER A 2 UNP Q9H6S0 EXPRESSION TAG SEQADV 2YU6 SER A 3 UNP Q9H6S0 EXPRESSION TAG SEQADV 2YU6 GLY A 4 UNP Q9H6S0 EXPRESSION TAG SEQADV 2YU6 SER A 5 UNP Q9H6S0 EXPRESSION TAG SEQADV 2YU6 SER A 6 UNP Q9H6S0 EXPRESSION TAG SEQADV 2YU6 GLY A 7 UNP Q9H6S0 EXPRESSION TAG SEQRES 1 A 141 GLY SER SER GLY SER SER GLY VAL ARG TYR PHE ILE MET SEQRES 2 A 141 LYS SER SER ASN LEU ARG ASN LEU GLU ILE SER GLN GLN SEQRES 3 A 141 LYS GLY ILE TRP SER THR THR PRO SER ASN GLU ARG LYS SEQRES 4 A 141 LEU ASN ARG ALA PHE TRP GLU SER SER ILE VAL TYR LEU SEQRES 5 A 141 VAL PHE SER VAL GLN GLY SER GLY HIS PHE GLN GLY PHE SEQRES 6 A 141 SER ARG MET SER SER GLU ILE GLY ARG GLU LYS SER GLN SEQRES 7 A 141 ASP TRP GLY SER ALA GLY LEU GLY GLY VAL PHE LYS VAL SEQRES 8 A 141 GLU TRP ILE ARG LYS GLU SER LEU PRO PHE GLN PHE ALA SEQRES 9 A 141 HIS HIS LEU LEU ASN PRO TRP ASN ASP ASN LYS LYS VAL SEQRES 10 A 141 GLN ILE SER ARG ASP GLY GLN GLU LEU GLU PRO GLN VAL SEQRES 11 A 141 GLY GLU GLN LEU LEU GLN LEU TRP GLU ARG LEU HELIX 1 1 ARG A 19 GLN A 26 1 8 HELIX 2 2 GLU A 37 GLU A 46 1 10 HELIX 3 3 PHE A 101 ALA A 104 1 4 HELIX 4 4 VAL A 130 ARG A 140 1 11 SHEET 1 A 6 ILE A 29 SER A 31 0 SHEET 2 A 6 VAL A 88 ARG A 95 -1 O PHE A 89 N TRP A 30 SHEET 3 A 6 GLY A 64 MET A 68 -1 N ARG A 67 O GLU A 92 SHEET 4 A 6 VAL A 50 VAL A 56 -1 N VAL A 50 O MET A 68 SHEET 5 A 6 ARG A 9 SER A 15 1 N SER A 15 O SER A 55 SHEET 6 A 6 GLN A 124 LEU A 126 -1 O LEU A 126 N TYR A 10 SHEET 1 B 2 HIS A 61 PHE A 62 0 SHEET 2 B 2 LEU A 99 PRO A 100 -1 O LEU A 99 N PHE A 62 SHEET 1 C 2 LEU A 108 ASN A 109 0 SHEET 2 C 2 LYS A 115 LYS A 116 -1 O LYS A 115 N ASN A 109 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 223 0 0 4 10 0 0 6 0 0 0 11 END