HEADER SIGNALING PROTEIN 03-APR-07 2YSQ TITLE SOLUTION STRUCTURE OF THE SH3 DOMAIN FROM RHO GUANINE TITLE 2 NUCLEOTIDE EXCHANGE FACTOR 9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN; COMPND 5 SYNONYM: RAC/CDC42 GUANINE NUCLEOTIDE EXCHANGE FACTOR 9, COMPND 6 COLLYBISTIN, PEM-2 HOMOLOG; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARHGEF9, KIAA0424; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P050919-06; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS SH3 DOMAIN; CDC42 GUANINE NUCLEOTIDE EXCHANGE FACTOR (GEF) KEYWDS 2 9, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT ON PROTEIN KEYWDS 3 STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN STRUCTURAL KEYWDS 4 GENOMICS/PROTEOMICS INITIATIVE, RSGI, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.R.QIN,F.HAYASHI,S.YOKOYAMA,RIKEN STRUCTURAL AUTHOR 2 GENOMICS/PROTEOMICS INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2YSQ 1 VERSN REVDAT 1 09-OCT-07 2YSQ 0 JRNL AUTH X.R.QIN,F.HAYASHI,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE SH3 DOMAIN FROM RHO JRNL TITL 2 GUANINE NUCLEOTIDE EXCHANGE FACTOR 9 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YSQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-APR-07. REMARK 100 THE RCSB ID CODE IS RCSB027086. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.46MM 13C, 15N-LABELED REMARK 210 PROTEIN; 20MM D-TRIS- REMARK 210 HCL(PH7.0); 100MM NACL; 1MM D- REMARK 210 DTT; 0.02% NAN3; 90% H2O, 10% REMARK 210 D2O' REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, NMRPIPE 20030801, REMARK 210 NMRVIEW 5.0.4, KUJIRA 0.9820, REMARK 210 CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY,TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 115.84 -164.88 REMARK 500 1 ALA A 31 107.83 -35.74 REMARK 500 1 ASN A 42 179.22 -53.78 REMARK 500 1 VAL A 66 43.37 -85.95 REMARK 500 1 GLU A 73 117.71 -169.51 REMARK 500 2 SER A 5 110.37 -174.34 REMARK 500 2 ALA A 15 107.94 -58.82 REMARK 500 2 HIS A 19 71.17 -107.08 REMARK 500 2 ALA A 23 173.93 -47.45 REMARK 500 2 ASP A 33 164.44 -42.14 REMARK 500 2 ALA A 40 59.25 -116.31 REMARK 500 2 LYS A 43 -73.42 -67.52 REMARK 500 2 PHE A 61 33.34 -86.72 REMARK 500 2 ASP A 70 43.23 -81.78 REMARK 500 2 GLU A 71 42.78 -103.55 REMARK 500 3 SER A 9 170.44 -59.25 REMARK 500 3 MET A 22 40.92 -85.23 REMARK 500 3 LEU A 27 102.03 -56.17 REMARK 500 4 SER A 6 137.51 -35.77 REMARK 500 4 ALA A 15 105.53 -58.98 REMARK 500 4 ASP A 18 130.90 -35.59 REMARK 500 4 HIS A 19 72.37 -105.68 REMARK 500 4 ALA A 23 165.42 -44.12 REMARK 500 4 ASN A 24 161.50 -43.39 REMARK 500 4 ARG A 25 97.70 -34.48 REMARK 500 4 LEU A 27 105.50 -51.01 REMARK 500 4 ALA A 31 108.48 -44.11 REMARK 500 4 ALA A 40 46.69 -85.38 REMARK 500 4 PRO A 78 -174.28 -69.78 REMARK 500 5 ALA A 15 103.48 -55.49 REMARK 500 5 THR A 21 146.60 -174.12 REMARK 500 5 MET A 22 49.09 -94.54 REMARK 500 5 PHE A 29 -178.67 -173.21 REMARK 500 5 ALA A 31 126.97 -35.45 REMARK 500 5 ASN A 42 -175.76 -58.09 REMARK 500 5 TRP A 65 31.44 -88.22 REMARK 500 5 ASN A 67 41.65 -93.96 REMARK 500 5 PRO A 78 -173.39 -69.82 REMARK 500 6 SER A 9 -177.87 -65.22 REMARK 500 6 ALA A 15 104.28 -59.44 REMARK 500 6 HIS A 19 73.11 -110.83 REMARK 500 6 ALA A 23 169.42 -49.35 REMARK 500 6 GLU A 26 102.71 -47.80 REMARK 500 6 LEU A 27 106.70 -41.53 REMARK 500 6 ALA A 31 106.77 -33.96 REMARK 500 6 ASP A 39 117.58 -170.76 REMARK 500 6 ASN A 42 -177.87 -51.70 REMARK 500 6 LYS A 43 -175.03 -67.78 REMARK 500 6 ASP A 44 -35.15 -34.40 REMARK 500 6 ASN A 67 136.49 -35.76 REMARK 500 6 SER A 80 134.72 -36.09 REMARK 500 7 SER A 3 141.21 -172.25 REMARK 500 7 SER A 5 111.48 -35.11 REMARK 500 7 SER A 6 97.65 -47.07 REMARK 500 7 MET A 22 54.13 -97.69 REMARK 500 7 ALA A 40 43.49 -97.58 REMARK 500 7 PHE A 61 39.30 -89.07 REMARK 500 7 ASP A 70 43.11 38.59 REMARK 500 7 VAL A 72 32.20 38.23 REMARK 500 7 PRO A 78 -178.34 -69.73 REMARK 500 8 SER A 2 159.18 -45.37 REMARK 500 8 SER A 3 168.13 -45.37 REMARK 500 8 THR A 21 122.80 -171.71 REMARK 500 8 VAL A 66 145.59 -34.29 REMARK 500 8 ASP A 70 148.37 -35.10 REMARK 500 8 GLU A 71 146.77 -35.30 REMARK 500 8 GLU A 73 150.71 -35.01 REMARK 500 8 PRO A 78 -174.61 -69.75 REMARK 500 8 SER A 80 174.37 -48.30 REMARK 500 9 ASP A 18 115.85 -37.02 REMARK 500 9 ALA A 31 103.90 -34.33 REMARK 500 9 ASP A 33 173.56 -50.35 REMARK 500 9 ALA A 40 53.96 -106.22 REMARK 500 9 ASN A 42 50.33 35.70 REMARK 500 9 TRP A 65 33.91 -87.24 REMARK 500 9 GLN A 68 42.02 -100.09 REMARK 500 9 ASP A 70 41.76 -102.27 REMARK 500 9 GLU A 73 115.06 -171.91 REMARK 500 9 SER A 76 131.28 -34.52 REMARK 500 9 PRO A 78 -172.38 -69.69 REMARK 500 10 ALA A 15 102.37 -54.32 REMARK 500 10 THR A 21 149.85 -172.03 REMARK 500 10 ALA A 31 106.67 -54.22 REMARK 500 10 ALA A 40 105.17 -173.17 REMARK 500 10 SER A 41 -67.55 -131.10 REMARK 500 10 LEU A 64 157.92 -47.47 REMARK 500 11 LEU A 38 -62.23 -95.20 REMARK 500 11 ALA A 40 49.74 -95.77 REMARK 500 11 PHE A 61 45.35 -101.93 REMARK 500 11 TRP A 65 33.60 -84.16 REMARK 500 12 ALA A 15 103.05 -58.23 REMARK 500 12 HIS A 19 77.56 -114.00 REMARK 500 12 LEU A 27 124.24 -36.60 REMARK 500 12 ALA A 31 104.66 -48.20 REMARK 500 12 LYS A 43 45.49 -79.53 REMARK 500 12 ASP A 44 -64.06 -125.37 REMARK 500 12 VAL A 72 145.33 -35.24 REMARK 500 12 PRO A 78 -171.92 -69.76 REMARK 500 13 SER A 2 123.80 -174.28 REMARK 500 13 SER A 6 -53.24 -123.06 REMARK 500 13 HIS A 19 78.01 -101.92 REMARK 500 13 ALA A 23 -179.68 -65.89 REMARK 500 13 SER A 41 43.08 39.71 REMARK 500 13 PHE A 61 36.07 -90.54 REMARK 500 13 PRO A 78 -176.88 -69.83 REMARK 500 14 SER A 2 106.59 -160.92 REMARK 500 14 VAL A 20 72.90 -67.19 REMARK 500 14 ALA A 23 113.21 -172.83 REMARK 500 14 ASN A 42 -178.58 -62.31 REMARK 500 14 ASP A 44 28.38 38.81 REMARK 500 14 GLU A 69 41.49 36.53 REMARK 500 15 ASN A 42 -178.54 -62.08 REMARK 500 15 VAL A 66 109.84 -39.05 REMARK 500 15 GLU A 71 42.59 -85.29 REMARK 500 15 GLU A 73 39.67 37.69 REMARK 500 16 SER A 2 149.39 -170.44 REMARK 500 16 SER A 5 49.14 36.94 REMARK 500 16 SER A 6 40.94 -88.37 REMARK 500 16 ALA A 31 109.51 -49.41 REMARK 500 16 ASP A 44 -72.33 -73.04 REMARK 500 16 GLU A 71 123.26 -173.69 REMARK 500 16 VAL A 72 113.35 -38.05 REMARK 500 16 GLU A 74 40.07 -99.58 REMARK 500 16 PRO A 78 -177.38 -69.86 REMARK 500 17 SER A 5 114.45 -160.50 REMARK 500 17 ALA A 23 -74.99 -117.36 REMARK 500 17 ASN A 24 110.93 -171.31 REMARK 500 17 ARG A 25 42.04 35.07 REMARK 500 17 ALA A 31 106.41 -52.47 REMARK 500 17 TRP A 65 30.62 -86.72 REMARK 500 17 GLU A 71 129.30 -39.75 REMARK 500 17 VAL A 72 151.63 -36.25 REMARK 500 17 PRO A 78 -173.67 -69.77 REMARK 500 18 SER A 9 97.91 -63.39 REMARK 500 18 ASP A 18 108.83 -59.08 REMARK 500 18 HIS A 19 78.13 -107.31 REMARK 500 18 GLU A 26 170.31 -59.65 REMARK 500 18 LYS A 43 49.86 -86.26 REMARK 500 18 ASP A 44 -69.87 -128.85 REMARK 500 18 LEU A 64 171.56 -55.34 REMARK 500 18 VAL A 72 -176.86 -59.62 REMARK 500 18 PRO A 78 -172.15 -69.75 REMARK 500 18 SER A 80 -63.67 -129.65 REMARK 500 19 SER A 9 32.35 74.09 REMARK 500 19 ILE A 10 124.77 -33.40 REMARK 500 19 ASP A 18 96.92 -50.51 REMARK 500 19 HIS A 19 72.61 -105.27 REMARK 500 19 MET A 22 40.38 -106.66 REMARK 500 19 ASN A 24 -64.73 -132.87 REMARK 500 19 GLU A 26 118.92 -35.12 REMARK 500 19 ASN A 42 175.99 -55.29 REMARK 500 19 TRP A 65 33.82 -85.19 REMARK 500 19 GLU A 69 40.44 72.84 REMARK 500 19 ASP A 70 41.69 -100.38 REMARK 500 20 PHE A 29 141.15 -174.92 REMARK 500 20 ASP A 33 159.33 -46.20 REMARK 500 20 GLN A 68 86.01 -69.00 REMARK 500 20 GLU A 69 107.90 -52.99 REMARK 500 20 SER A 79 90.85 -66.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK002100413.1 RELATED DB: TARGETDB DBREF 2YSQ A 7 75 UNP O43307 ARHG9_HUMAN 7 75 SEQADV 2YSQ GLY A 1 UNP O43307 EXPRESSION TAG SEQADV 2YSQ SER A 2 UNP O43307 EXPRESSION TAG SEQADV 2YSQ SER A 3 UNP O43307 EXPRESSION TAG SEQADV 2YSQ GLY A 4 UNP O43307 EXPRESSION TAG SEQADV 2YSQ SER A 5 UNP O43307 EXPRESSION TAG SEQADV 2YSQ SER A 6 UNP O43307 EXPRESSION TAG SEQADV 2YSQ SER A 76 UNP O43307 EXPRESSION TAG SEQADV 2YSQ GLY A 77 UNP O43307 EXPRESSION TAG SEQADV 2YSQ PRO A 78 UNP O43307 EXPRESSION TAG SEQADV 2YSQ SER A 79 UNP O43307 EXPRESSION TAG SEQADV 2YSQ SER A 80 UNP O43307 EXPRESSION TAG SEQADV 2YSQ GLY A 81 UNP O43307 EXPRESSION TAG SEQRES 1 A 81 GLY SER SER GLY SER SER GLY ASP SER ILE VAL SER ALA SEQRES 2 A 81 GLU ALA VAL TRP ASP HIS VAL THR MET ALA ASN ARG GLU SEQRES 3 A 81 LEU ALA PHE LYS ALA GLY ASP VAL ILE LYS VAL LEU ASP SEQRES 4 A 81 ALA SER ASN LYS ASP TRP TRP TRP GLY GLN ILE ASP ASP SEQRES 5 A 81 GLU GLU GLY TRP PHE PRO ALA SER PHE VAL ARG LEU TRP SEQRES 6 A 81 VAL ASN GLN GLU ASP GLU VAL GLU GLU GLY SER GLY PRO SEQRES 7 A 81 SER SER GLY SHEET 1 A 5 GLU A 54 PRO A 58 0 SHEET 2 A 5 TRP A 45 GLN A 49 -1 N GLY A 48 O GLY A 55 SHEET 3 A 5 VAL A 34 ASP A 39 -1 N LEU A 38 O TRP A 47 SHEET 4 A 5 VAL A 11 ALA A 15 -1 N VAL A 11 O VAL A 37 SHEET 5 A 5 VAL A 62 LEU A 64 -1 O ARG A 63 N GLU A 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 234 0 0 0 5 0 0 6 0 0 0 7 END