HEADER GENE REGULATION 02-APR-07 2YRM TITLE SOLUTION STRUCTURE OF THE 1ST ZF-C2H2 DOMAIN FROM HUMAN B- TITLE 2 CELL LYMPHOMA 6 PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: B-CELL LYMPHOMA 6 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZF-C2H2 DOMAIN; COMPND 5 SYNONYM: BCL-6, ZINC FINGER PROTEIN 51, LAZ-3 PROTEIN, BCL- COMPND 6 5, ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 27; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BCL6; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P070129-01; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS ZF-C2H2, ZINC BINDING, DNA BINDING, STRUCTURAL GENOMICS, KEYWDS 2 NPPSFA, NATIONAL PROJECT ON PROTEIN STRUCTURAL AND KEYWDS 3 FUNCTIONAL ANALYSES, RIKEN STRUCTURAL GENOMICS/PROTEOMICS KEYWDS 4 INITIATIVE, RSGI, GENE REGULATION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR T.TOMIZAWA,K.SAITO,S.KOSHIBA,S.WATANABE,T.HARADA,T.KIGAWA, AUTHOR 2 S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 3 (RSGI) REVDAT 2 24-FEB-09 2YRM 1 VERSN REVDAT 1 02-OCT-07 2YRM 0 JRNL AUTH T.TOMIZAWA,K.SAITO,S.KOSHIBA,S.WATANABE,T.HARADA, JRNL AUTH 2 T.KIGAWA,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE 1ST ZF-C2H2 DOMAIN FROM JRNL TITL 2 HUMAN B-CELL LYMPHOMA 6 PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YRM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027046. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.17MM ZF-C2H2 DOMAIN U-15N, REMARK 210 13C; 20MM D-TRIS-HCL(PH 7.0); REMARK 210 100MM NACL; 1MM D-DTT; 0.02% REMARK 210 NAN3; 0.05MM ZNCL2; 1MM IDA; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20030801, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9825, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 RESTRAINTED MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 3 142.83 -38.97 REMARK 500 1 HIS A 34 78.74 -113.93 REMARK 500 1 SER A 42 84.50 -69.34 REMARK 500 2 SER A 5 -44.73 -130.30 REMARK 500 2 SER A 6 142.24 -174.12 REMARK 500 2 ALA A 10 41.46 -102.51 REMARK 500 3 GLN A 32 -65.12 -90.87 REMARK 500 3 PRO A 40 80.61 -69.78 REMARK 500 3 SER A 41 -63.90 -102.06 REMARK 500 3 SER A 42 45.32 -109.98 REMARK 500 4 SER A 2 42.18 -91.86 REMARK 500 4 ALA A 10 -59.13 -129.53 REMARK 500 4 LYS A 37 126.32 -39.67 REMARK 500 5 GLU A 15 -71.11 -50.73 REMARK 500 5 LYS A 37 152.57 -48.51 REMARK 500 6 SER A 2 49.89 38.29 REMARK 500 7 ALA A 10 41.02 -81.37 REMARK 500 8 SER A 21 35.71 -89.10 REMARK 500 8 GLU A 22 110.48 -170.72 REMARK 500 8 LYS A 27 -32.21 -35.08 REMARK 500 8 HIS A 34 79.31 -100.90 REMARK 500 8 LYS A 37 78.81 -101.17 REMARK 500 8 SER A 38 149.96 -174.10 REMARK 500 8 SER A 41 47.13 35.38 REMARK 500 9 PRO A 40 99.37 -69.79 REMARK 500 10 GLU A 15 -74.95 -60.13 REMARK 500 10 ASP A 36 -64.30 -121.34 REMARK 500 10 PRO A 40 90.83 -69.80 REMARK 500 11 SER A 2 149.68 -38.57 REMARK 500 11 SER A 5 101.91 -58.02 REMARK 500 11 ALA A 10 79.80 -102.20 REMARK 500 11 GLN A 32 -64.90 -93.84 REMARK 500 11 SER A 42 42.61 39.94 REMARK 500 12 SER A 21 39.55 -83.15 REMARK 500 12 GLU A 22 134.96 -172.62 REMARK 500 12 SER A 38 170.65 -58.74 REMARK 500 12 PRO A 40 -179.80 -69.75 REMARK 500 13 SER A 2 41.98 36.54 REMARK 500 13 GLU A 22 138.08 -171.54 REMARK 500 13 HIS A 34 76.27 -111.38 REMARK 500 13 SER A 41 42.73 37.46 REMARK 500 15 SER A 2 43.47 -82.23 REMARK 500 15 PHE A 11 112.44 -34.03 REMARK 500 15 GLU A 22 118.32 -171.27 REMARK 500 15 SER A 42 -55.99 -133.44 REMARK 500 16 ALA A 10 40.30 -108.30 REMARK 500 16 SER A 38 155.13 -36.83 REMARK 500 16 PRO A 40 96.90 -69.75 REMARK 500 16 SER A 41 44.18 -94.23 REMARK 500 17 SER A 38 159.86 -48.49 REMARK 500 17 SER A 41 31.26 72.49 REMARK 500 18 SER A 35 49.78 -80.77 REMARK 500 18 LYS A 37 144.78 -34.38 REMARK 500 19 HIS A 34 78.44 -114.19 REMARK 500 19 ASP A 36 152.43 -38.61 REMARK 500 19 LYS A 37 40.69 -97.37 REMARK 500 19 PRO A 40 0.51 -69.76 REMARK 500 20 SER A 3 164.43 -44.70 REMARK 500 20 GLU A 15 -58.46 -120.50 REMARK 500 20 CYS A 16 -176.87 -67.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 13 SG REMARK 620 2 CYS A 16 SG 99.7 REMARK 620 3 HIS A 29 NE2 109.3 101.2 REMARK 620 4 HIS A 34 NE2 114.4 108.0 121.1 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001594.3 RELATED DB: TARGETDB DBREF 2YRM A 8 37 UNP P41182 BCL6_HUMAN 515 544 SEQADV 2YRM GLY A 1 UNP P41182 EXPRESSION TAG SEQADV 2YRM SER A 2 UNP P41182 EXPRESSION TAG SEQADV 2YRM SER A 3 UNP P41182 EXPRESSION TAG SEQADV 2YRM GLY A 4 UNP P41182 EXPRESSION TAG SEQADV 2YRM SER A 5 UNP P41182 EXPRESSION TAG SEQADV 2YRM SER A 6 UNP P41182 EXPRESSION TAG SEQADV 2YRM GLY A 7 UNP P41182 EXPRESSION TAG SEQADV 2YRM SER A 38 UNP P41182 EXPRESSION TAG SEQADV 2YRM GLY A 39 UNP P41182 EXPRESSION TAG SEQADV 2YRM PRO A 40 UNP P41182 EXPRESSION TAG SEQADV 2YRM SER A 41 UNP P41182 EXPRESSION TAG SEQADV 2YRM SER A 42 UNP P41182 EXPRESSION TAG SEQADV 2YRM GLY A 43 UNP P41182 EXPRESSION TAG SEQRES 1 A 43 GLY SER SER GLY SER SER GLY ASN GLY ALA PHE PHE CYS SEQRES 2 A 43 ASN GLU CYS ASP CYS ARG PHE SER GLU GLU ALA SER LEU SEQRES 3 A 43 LYS ARG HIS THR LEU GLN THR HIS SER ASP LYS SER GLY SEQRES 4 A 43 PRO SER SER GLY HET ZN A 201 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 1 GLU A 22 HIS A 34 1 13 LINK SG CYS A 13 ZN ZN A 201 1555 1555 2.35 LINK SG CYS A 16 ZN ZN A 201 1555 1555 2.36 LINK NE2 HIS A 29 ZN ZN A 201 1555 1555 1.92 LINK NE2 HIS A 34 ZN ZN A 201 1555 1555 2.05 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 149 0 1 1 0 0 0 6 0 0 0 4 END