HEADER PROTEIN BINDING 30-MAR-07 2YQF TITLE SOLUTION STRUCTURE OF THE DEATH DOMAIN OF ANKYRIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANKYRIN-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DEATH DOMAIN, UNP RESIDUES 1394-1497; COMPND 5 SYNONYM: ERYTHROCYTE ANKYRIN, ANKYRIN-R; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ANK1, ANK; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: P060123-20; SOURCE 8 OTHER_DETAILS: CELL-FREE PROTEIN SYNTHESIS KEYWDS DEATH DOMAIN, STRUCTURAL GENOMICS, NPPSFA, NATIONAL PROJECT KEYWDS 2 ON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES, RIKEN KEYWDS 3 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, PROTEIN KEYWDS 4 BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, AUTHOR 2 M.SHIROUZU,S.YOKOYAMA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS AUTHOR 3 INITIATIVE (RSGI) REVDAT 2 24-FEB-09 2YQF 1 VERSN REVDAT 1 01-APR-08 2YQF 0 JRNL AUTH W.TANABE,S.SUZUKI,Y.MUTO,M.INOUE,T.KIGAWA,T.TERADA, JRNL AUTH 2 M.SHIROUZU,S.YOKOYAMA JRNL TITL SOLUTION STRUCTURE OF THE DEATH DOMAIN OF ANKYRIN-1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.0.17 REMARK 3 AUTHORS : GUNTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2YQF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-07. REMARK 100 THE RCSB ID CODE IS RCSB027003. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 120MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM D-TRIS-HCL(PH7.0); 100MM REMARK 210 NACL; 1MM D-DTT; 0.02% NAN3; REMARK 210 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY, 3D_ REMARK 210 13C-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 3.5, NMRPIPE REMARK 210 20060702, NMRVIEW 5.0.4, REMARK 210 KUJIRA 0.9820, CYANA 2.0.17 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, REMARK 210 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A1417 -28.33 -37.55 REMARK 500 1 ILE A1432 -72.41 -57.05 REMARK 500 1 ARG A1491 157.05 -45.38 REMARK 500 2 SER A1389 98.96 -64.98 REMARK 500 2 PRO A1394 -171.95 -69.77 REMARK 500 2 LYS A1406 -70.79 -53.39 REMARK 500 2 ILE A1432 -72.03 -59.43 REMARK 500 2 ALA A1462 95.55 -54.71 REMARK 500 2 ARG A1488 90.54 -60.22 REMARK 500 3 SER A1417 -27.68 -37.94 REMARK 500 3 ILE A1432 -71.42 -61.61 REMARK 500 3 ASN A1461 -36.54 -39.07 REMARK 500 3 ALA A1462 126.33 -36.43 REMARK 500 3 ARG A1488 109.03 -45.20 REMARK 500 3 ARG A1491 45.05 -80.99 REMARK 500 3 ASN A1492 49.59 35.16 REMARK 500 3 PRO A1495 98.61 -69.81 REMARK 500 4 SER A1389 125.14 -170.16 REMARK 500 4 SER A1391 30.70 37.48 REMARK 500 4 SER A1417 -29.81 -37.67 REMARK 500 4 ILE A1432 -72.08 -58.32 REMARK 500 4 ALA A1462 115.82 -35.13 REMARK 500 4 MET A1464 -34.84 -34.62 REMARK 500 4 ARG A1488 107.06 -50.28 REMARK 500 4 ARG A1491 147.10 -173.55 REMARK 500 5 SER A1389 102.48 -54.92 REMARK 500 5 LEU A1397 97.60 -53.72 REMARK 500 5 SER A1417 -25.89 -39.02 REMARK 500 5 ILE A1432 -71.35 -57.05 REMARK 500 5 ALA A1462 127.48 -38.87 REMARK 500 5 GLU A1478 -36.09 -36.65 REMARK 500 6 SER A1388 43.12 -90.46 REMARK 500 6 SER A1417 -28.19 -38.55 REMARK 500 6 TRP A1418 -38.93 -36.20 REMARK 500 6 MET A1464 -37.04 -39.13 REMARK 500 6 LEU A1493 144.16 -35.35 REMARK 500 7 SER A1389 134.20 -37.58 REMARK 500 7 GLU A1401 -34.40 -37.46 REMARK 500 7 SER A1417 -27.77 -37.62 REMARK 500 7 ILE A1432 -70.55 -57.18 REMARK 500 7 ASN A1461 -35.59 -38.40 REMARK 500 7 ASP A1496 160.55 -44.05 REMARK 500 8 PRO A1394 0.49 -69.75 REMARK 500 8 SER A1417 -27.06 -38.60 REMARK 500 8 ILE A1432 -71.48 -56.16 REMARK 500 8 ALA A1462 146.07 -38.57 REMARK 500 8 ASP A1496 111.25 -174.74 REMARK 500 9 SER A1398 44.92 35.52 REMARK 500 9 SER A1417 -26.17 -38.82 REMARK 500 9 GLU A1478 -34.35 -38.76 REMARK 500 9 ARG A1488 132.64 -173.60 REMARK 500 9 ASN A1492 -71.50 -47.86 REMARK 500 9 PRO A1495 3.67 -69.79 REMARK 500 9 ASP A1496 126.58 -33.30 REMARK 500 10 LYS A1406 -70.50 -43.60 REMARK 500 10 SER A1417 -27.67 -37.98 REMARK 500 10 ILE A1432 -71.97 -59.14 REMARK 500 10 ASN A1461 -39.30 -38.23 REMARK 500 10 ALA A1462 110.74 -34.01 REMARK 500 10 ASP A1475 47.12 73.10 REMARK 500 11 PRO A1394 -178.02 -69.73 REMARK 500 11 LEU A1397 159.78 -43.85 REMARK 500 11 THR A1400 -175.42 -66.90 REMARK 500 11 ALA A1462 110.09 -36.56 REMARK 500 11 ILE A1474 32.88 -84.66 REMARK 500 11 LEU A1493 109.58 -47.30 REMARK 500 11 LYS A1494 139.73 -174.20 REMARK 500 12 SER A1417 -31.03 -35.94 REMARK 500 12 TRP A1418 -39.31 -35.13 REMARK 500 12 ALA A1462 106.30 -35.39 REMARK 500 12 ILE A1474 34.44 -84.76 REMARK 500 12 GLU A1484 -71.22 -120.71 REMARK 500 12 SER A1490 41.63 38.33 REMARK 500 13 SER A1417 -26.12 -39.43 REMARK 500 13 ALA A1462 103.34 -34.30 REMARK 500 13 ASP A1496 152.41 -48.62 REMARK 500 14 SER A1392 -53.11 -121.32 REMARK 500 14 SER A1417 -26.66 -38.53 REMARK 500 14 ALA A1462 101.82 -37.23 REMARK 500 15 PRO A1394 -179.64 -69.77 REMARK 500 15 SER A1396 150.41 -42.65 REMARK 500 15 SER A1398 48.38 36.46 REMARK 500 15 GLU A1401 -29.80 -38.90 REMARK 500 15 SER A1417 -33.59 -37.46 REMARK 500 15 ILE A1432 -70.59 -60.70 REMARK 500 15 ALA A1462 138.90 -37.36 REMARK 500 15 ILE A1474 30.49 -84.19 REMARK 500 15 ARG A1491 41.93 -85.62 REMARK 500 16 PRO A1394 3.04 -69.76 REMARK 500 16 LEU A1397 78.33 -100.86 REMARK 500 16 SER A1417 -25.96 -39.53 REMARK 500 16 ILE A1432 -72.70 -60.69 REMARK 500 16 ALA A1462 102.66 -38.36 REMARK 500 16 GLU A1478 -39.80 -37.30 REMARK 500 16 GLN A1489 117.03 -174.37 REMARK 500 16 ARG A1491 98.67 -69.89 REMARK 500 17 LEU A1397 115.01 -39.78 REMARK 500 17 GLU A1401 -39.70 -39.37 REMARK 500 17 SER A1417 -28.89 -37.11 REMARK 500 17 MET A1464 -39.62 -37.25 REMARK 500 17 ILE A1474 32.78 -86.79 REMARK 500 18 SER A1417 -25.93 -39.03 REMARK 500 18 ILE A1432 -73.30 -60.62 REMARK 500 18 GLU A1478 -39.58 -37.11 REMARK 500 18 ARG A1491 43.52 39.10 REMARK 500 18 LEU A1493 106.26 -46.35 REMARK 500 19 SER A1389 158.48 -48.93 REMARK 500 19 SER A1391 106.70 -53.88 REMARK 500 19 SER A1417 -30.91 -35.88 REMARK 500 19 ILE A1432 -70.91 -59.96 REMARK 500 19 ALA A1462 117.45 -37.91 REMARK 500 19 GLU A1478 -36.67 -37.60 REMARK 500 19 ARG A1491 44.76 -96.97 REMARK 500 19 LYS A1494 142.47 -38.78 REMARK 500 20 SER A1392 -51.49 -123.15 REMARK 500 20 LYS A1406 -70.79 -40.28 REMARK 500 20 SER A1417 -25.39 -39.65 REMARK 500 20 ALA A1462 99.29 -37.50 REMARK 500 20 GLU A1478 -37.82 -39.69 REMARK 500 20 ARG A1488 126.15 -33.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: HSK003001404.1 RELATED DB: TARGETDB DBREF 2YQF A 1394 1497 UNP P16157 ANK1_HUMAN 1394 1497 SEQADV 2YQF GLY A 1387 UNP P16157 EXPRESSION TAG SEQADV 2YQF SER A 1388 UNP P16157 EXPRESSION TAG SEQADV 2YQF SER A 1389 UNP P16157 EXPRESSION TAG SEQADV 2YQF GLY A 1390 UNP P16157 EXPRESSION TAG SEQADV 2YQF SER A 1391 UNP P16157 EXPRESSION TAG SEQADV 2YQF SER A 1392 UNP P16157 EXPRESSION TAG SEQADV 2YQF GLY A 1393 UNP P16157 EXPRESSION TAG SEQRES 1 A 111 GLY SER SER GLY SER SER GLY PRO GLY SER LEU SER GLY SEQRES 2 A 111 THR GLU GLN ALA GLU MET LYS MET ALA VAL ILE SER GLU SEQRES 3 A 111 HIS LEU GLY LEU SER TRP ALA GLU LEU ALA ARG GLU LEU SEQRES 4 A 111 GLN PHE SER VAL GLU ASP ILE ASN ARG ILE ARG VAL GLU SEQRES 5 A 111 ASN PRO ASN SER LEU LEU GLU GLN SER VAL ALA LEU LEU SEQRES 6 A 111 ASN LEU TRP VAL ILE ARG GLU GLY GLN ASN ALA ASN MET SEQRES 7 A 111 GLU ASN LEU TYR THR ALA LEU GLN SER ILE ASP ARG GLY SEQRES 8 A 111 GLU ILE VAL ASN MET LEU GLU GLY SER GLY ARG GLN SER SEQRES 9 A 111 ARG ASN LEU LYS PRO ASP ARG HELIX 1 1 THR A 1400 GLY A 1415 1 16 HELIX 2 2 SER A 1417 LEU A 1425 1 9 HELIX 3 3 SER A 1428 ASN A 1439 1 12 HELIX 4 4 SER A 1442 GLY A 1459 1 18 HELIX 5 5 ASN A 1463 ILE A 1474 1 12 HELIX 6 6 GLY A 1477 GLU A 1484 1 8 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 194 0 0 6 0 0 0 6 0 0 0 9 END