HEADER HYDROLASE 13-OCT-12 2YN9 TITLE CRYO-EM STRUCTURE OF GASTRIC H+,K+-ATPASE WITH BOUND RUBIDIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GASTRIC H(+)/K(+) ATPASE SUBUNIT ALPHA, PROTON PUMP; COMPND 5 EC: 3.6.3.10; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: GASTRIC H(+)/K(+) ATPASE SUBUNIT BETA, PROTON PUMP BETA COMPND 10 CHAIN, GP60-90 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 ORGAN: STOMACH; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 8 ORGANISM_COMMON: PIG; SOURCE 9 ORGANISM_TAXID: 9823; SOURCE 10 ORGAN: STOMACH KEYWDS HYDROLASE, P-TYPE ATPASE, PROTON PUMP EXPDTA ELECTRON CRYSTALLOGRAPHY AUTHOR K.ABE,K.TANI,T.FRIEDRICH,Y.FUJIYOSHI REVDAT 3 16-JUL-14 2YN9 1 REMARK REVDAT 2 16-JAN-13 2YN9 1 JRNL REMARK LINK MASTER REVDAT 1 07-NOV-12 2YN9 0 JRNL AUTH K.ABE,K.TANI,T.FRIEDRICH,Y.FUJIYOSHI JRNL TITL CRYO-EM STRUCTURE OF GASTRIC H+,K+-ATPASE WITH A SINGLE JRNL TITL 2 OCCUPIED CATION-BINDING SITE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 18401 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23091039 JRNL DOI 10.1073/PNAS.1212294109 REMARK 2 REMARK 2 RESOLUTION. 8.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SITUS REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 8.0 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 129 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0. REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 4166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 9694 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.018 REMARK 3 BOND ANGLES (DEGREES) : 2.1 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ALL REGIONS WERE MODELED REMARK 3 STEREOCHEMICALLY. SUBMISSION BASED ON EXPERIMENTAL DATA FROM REMARK 3 EMDB EMD-2219. (DEPOSITION ID: 11197). REMARK 4 REMARK 4 2YN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-OCT-12. REMARK 100 THE PDBE ID CODE IS EBI-54462. REMARK 240 REMARK 240 EXPERIMENTAL DETAILS REMARK 240 RECONSTRUCTION METHOD : CRYSTALLOGRAPHY REMARK 240 SAMPLE TYPE : 2D CRYSTAL REMARK 240 SPECIMEN TYPE : VITREOUS ICE REMARK 240 DATA ACQUISITION REMARK 240 DATE OF DATA COLLECTION : 23-MAR-10 REMARK 240 TEMPERATURE (KELVIN) : 4 REMARK 240 PH : 4.8 REMARK 240 NUMBER OF CRYSTALS USED : 248 REMARK 240 MICROSCOPE MODEL : JEOL KYOTO-3000SFF REMARK 240 DETECTOR TYPE : KODAK SO 163 FILM REMARK 240 ACCELERATION VOLTAGE (KV) : 300 REMARK 240 NUMBER OF UNIQUE REFLECTIONS : 39197 REMARK 240 RESOLUTION RANGE HIGH (A) : 8.0 REMARK 240 RESOLUTION RANGE LOW (A) : 129.0 REMARK 240 DATA SCALING SOFTWARE : MRC SUITE REMARK 240 COMPLETENESS FOR RANGE (%) : 73.2 REMARK 240 DATA REDUNDANCY : NULL REMARK 240 IN THE HIGHEST RESOLUTION SHELL. REMARK 240 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) :NULL REMARK 240 HIGHEST RESOLUTION SHELL, RANGE LOW (A) :NULL REMARK 240 COMPLETENESS FOR SHELL (%) : NULL REMARK 240 DATA REDUNDANCY IN SHELL : NULL REMARK 240 R MERGE FOR SHELL (I) : NULL REMARK 240 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 240 SOFTWARE USED : MRC REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 LYS A 2 REMARK 465 ALA A 3 REMARK 465 GLU A 4 REMARK 465 ASN A 5 REMARK 465 TYR A 6 REMARK 465 GLU A 7 REMARK 465 LEU A 8 REMARK 465 TYR A 9 REMARK 465 GLN A 10 REMARK 465 VAL A 11 REMARK 465 GLU A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 PRO A 15 REMARK 465 GLY A 16 REMARK 465 PRO A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 ASP A 20 REMARK 465 MET A 21 REMARK 465 ALA A 22 REMARK 465 ALA A 23 REMARK 465 LYS A 24 REMARK 465 MET A 25 REMARK 465 SER A 26 REMARK 465 LYS A 27 REMARK 465 LYS A 28 REMARK 465 LYS A 29 REMARK 465 ALA A 30 REMARK 465 GLY A 31 REMARK 465 ARG A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 GLY A 35 REMARK 465 LYS A 36 REMARK 465 ARG A 37 REMARK 465 LYS A 38 REMARK 465 GLU A 39 REMARK 465 LYS A 40 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ALA B 3 REMARK 465 LEU B 4 REMARK 465 GLN B 5 REMARK 465 GLU B 6 REMARK 465 LYS B 7 REMARK 465 LYS B 8 REMARK 465 SER B 9 REMARK 465 CYS B 10 REMARK 465 SER B 11 REMARK 465 GLN B 12 REMARK 465 ARG B 13 REMARK 465 MET B 14 REMARK 465 GLU B 15 REMARK 465 GLU B 16 REMARK 465 PHE B 17 REMARK 465 GLN B 18 REMARK 465 ARG B 19 REMARK 465 TYR B 20 REMARK 465 CYS B 21 REMARK 465 TRP B 22 REMARK 465 ASN B 23 REMARK 465 PRO B 24 REMARK 465 ASP B 25 REMARK 465 THR B 26 REMARK 465 GLY B 27 REMARK 465 GLN B 28 REMARK 465 MET B 29 REMARK 465 LEU B 30 REMARK 465 GLY B 31 REMARK 465 SER B 163 REMARK 465 GLY B 164 REMARK 465 ARG B 165 REMARK 465 PRO B 166 REMARK 465 ASP B 167 REMARK 465 PRO B 168 REMARK 465 THR B 169 REMARK 465 PHE B 170 REMARK 465 LEU B 204 REMARK 465 ASP B 205 REMARK 465 GLN B 206 REMARK 465 PRO B 207 REMARK 465 ARG B 208 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SD MET A 48 CE LYS A 680 1.76 REMARK 500 SD MET A 48 NZ LYS A 680 2.17 REMARK 500 CE MET A 48 CE LYS A 680 1.62 REMARK 500 CE MET A 48 NZ LYS A 680 2.14 REMARK 500 O LEU A 173 NH1 ARG A 207 1.82 REMARK 500 OG1 THR A 291 OE1 GLU A 371 2.13 REMARK 500 CD GLN A 392 CD GLU A 413 2.20 REMARK 500 CD GLN A 392 OE2 GLU A 413 1.98 REMARK 500 CD GLN A 392 OE1 GLU A 413 2.20 REMARK 500 OE1 GLN A 392 CD GLU A 413 2.07 REMARK 500 OE1 GLN A 392 OE2 GLU A 413 2.15 REMARK 500 NE2 GLN A 392 CD GLU A 413 2.07 REMARK 500 NE2 GLN A 392 OE1 GLU A 413 1.46 REMARK 500 OG SER A 398 O MET A 600 2.08 REMARK 500 CG PHE A 864 CE2 TYR B 44 2.19 REMARK 500 CD1 PHE A 864 CE2 TYR B 44 1.42 REMARK 500 CE1 PHE A 864 CD2 TYR B 44 1.31 REMARK 500 CE1 PHE A 864 CE2 TYR B 44 1.44 REMARK 500 CZ PHE A 864 CD2 TYR B 44 1.82 REMARK 500 CD GLU A 885 NE2 GLN B 76 1.87 REMARK 500 OE2 GLU A 885 CD GLN B 76 2.18 REMARK 500 OE2 GLU A 885 NE2 GLN B 76 1.13 REMARK 500 CD2 HIS A 903 N VAL B 88 2.12 REMARK 500 CD2 HIS A 903 CG2 VAL B 88 1.62 REMARK 500 NE2 HIS A 903 N VAL B 88 1.41 REMARK 500 CG GLN A 905 CD2 TYR B 278 1.54 REMARK 500 CG GLN A 905 CE2 TYR B 278 1.24 REMARK 500 CG GLN A 905 CZ TYR B 278 2.03 REMARK 500 CD GLN A 905 CD2 TYR B 278 0.75 REMARK 500 CD GLN A 905 CE2 TYR B 278 1.11 REMARK 500 CD GLN A 905 CG TYR B 278 2.12 REMARK 500 OE1 GLN A 905 CD2 TYR B 278 1.43 REMARK 500 NE2 GLN A 905 CD2 TYR B 278 1.70 REMARK 500 NE2 GLN A 905 CE2 TYR B 278 1.32 REMARK 500 NE2 GLN A 905 CZ TYR B 278 2.12 REMARK 500 OD2 ASP A 906 OG1 THR B 83 2.16 REMARK 500 CE2 TYR A 911 CA THR B 70 2.00 REMARK 500 CE2 TYR A 911 C THR B 70 2.14 REMARK 500 CZ TYR A 911 N PRO B 71 2.11 REMARK 500 OH TYR A 911 C THR B 70 2.02 REMARK 500 OH TYR A 911 O THR B 70 1.89 REMARK 500 CG GLU A 914 ND2 ASN B 184 1.91 REMARK 500 CD GLU A 914 ND2 ASN B 184 1.75 REMARK 500 OE2 GLU A 914 CG ASN B 184 2.09 REMARK 500 OE2 GLU A 914 ND2 ASN B 184 1.30 REMARK 500 OG1 THR A 916 OD2 ASP B 276 2.20 REMARK 500 CG2 THR A 916 OD2 ASP B 276 1.77 REMARK 500 CD2 LEU A 944 CZ PHE A 958 1.62 REMARK 500 CD2 LEU A 944 CE1 PHE A 958 2.05 REMARK 500 NE ARG A 994 OH TYR B 73 2.14 REMARK 500 REMARK 500 THIS ENTRY HAS 56 CLOSE CONTACTS REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PRO A 342 N PRO A 342 CD 0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 603 C - N - CD ANGL. DEV. = -47.0 DEGREES REMARK 500 GLY B 93 N - CA - C ANGL. DEV. = -15.9 DEGREES REMARK 500 ASP B 95 N - CA - C ANGL. DEV. = -23.7 DEGREES REMARK 500 CYS B 131 CB - CA - C ANGL. DEV. = -10.1 DEGREES REMARK 500 PRO B 219 C - N - CD ANGL. DEV. = -27.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 135 161.96 -42.05 REMARK 500 ASP A 137 -84.44 -44.17 REMARK 500 VAL A 174 142.42 -33.22 REMARK 500 PRO A 175 -101.52 -95.18 REMARK 500 GLN A 176 -73.96 -155.78 REMARK 500 SER A 255 6.48 81.92 REMARK 500 GLU A 289 -179.71 85.98 REMARK 500 GLU A 374 -64.49 -92.20 REMARK 500 THR A 375 -67.33 -10.95 REMARK 500 THR A 389 -70.78 -90.74 REMARK 500 MET A 395 170.50 -51.18 REMARK 500 THR A 396 160.89 173.91 REMARK 500 SER A 398 -88.27 -105.28 REMARK 500 ASP A 421 118.59 -173.01 REMARK 500 CYS A 437 25.32 -76.85 REMARK 500 PRO A 510 83.52 -55.26 REMARK 500 ARG A 511 -165.83 -114.28 REMARK 500 LYS A 533 -146.94 60.44 REMARK 500 TYR A 578 122.65 -30.65 REMARK 500 MET A 585 95.97 -66.74 REMARK 500 ILE A 601 -177.93 -177.58 REMARK 500 CYS A 822 -73.08 -87.79 REMARK 500 PHE A 959 -33.52 -154.68 REMARK 500 ASN A 989 38.13 71.27 REMARK 500 SER A1025 -54.08 172.69 REMARK 500 THR B 33 -164.13 -126.68 REMARK 500 ALA B 46 52.41 -113.25 REMARK 500 PHE B 47 -55.42 -140.58 REMARK 500 THR B 65 35.57 -85.99 REMARK 500 PRO B 68 44.19 -77.35 REMARK 500 TYR B 69 -12.54 -165.02 REMARK 500 ASP B 75 -83.75 -32.17 REMARK 500 GLN B 76 -70.53 -21.10 REMARK 500 LYS B 92 -140.68 -101.71 REMARK 500 LEU B 94 58.59 170.51 REMARK 500 TYR B 120 47.38 -94.21 REMARK 500 SER B 128 -168.82 -60.99 REMARK 500 GLU B 134 -156.96 -164.11 REMARK 500 GLU B 140 -151.34 131.79 REMARK 500 HIS B 147 -168.65 -79.98 REMARK 500 ASN B 161 -1.27 66.52 REMARK 500 PHE B 172 -168.62 -104.92 REMARK 500 ALA B 173 108.98 -53.59 REMARK 500 LYS B 176 76.72 52.92 REMARK 500 ASN B 193 148.64 155.69 REMARK 500 SER B 194 -168.25 63.88 REMARK 500 ALA B 220 82.08 61.78 REMARK 500 THR B 223 -107.44 -154.40 REMARK 500 PRO B 238 -84.06 -54.54 REMARK 500 ASN B 251 130.66 -26.56 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASP B 95 46.9 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IWC RELATED DB: PDB REMARK 900 TFE-INDUDED STRUCTURE OF THE N-TERMINAL DOMAIN OF REMARK 900 PIGGASTRIC H/K-ATPASE REMARK 900 RELATED ID: 1IWF RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF PIG REMARK 900 GASTRICH/K-ATPASE REMARK 900 RELATED ID: 2XZB RELATED DB: PDB REMARK 900 PIG GASTRIC H,K-ATPASE WITH BOUND BEF AND SCH28080 REMARK 900 RELATED ID: EMD-2219 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF GASTRIC H+,K+-ATPASE WITH BOUND RB+ DBREF 2YN9 A 0 1033 UNP P19156 ATP4A_PIG 1 1034 DBREF 2YN9 B 1 290 UNP P18434 ATP4B_PIG 1 290 SEQRES 1 A 1034 MET GLY LYS ALA GLU ASN TYR GLU LEU TYR GLN VAL GLU SEQRES 2 A 1034 LEU GLY PRO GLY PRO SER GLY ASP MET ALA ALA LYS MET SEQRES 3 A 1034 SER LYS LYS LYS ALA GLY ARG GLY GLY GLY LYS ARG LYS SEQRES 4 A 1034 GLU LYS LEU GLU ASN MET LYS LYS GLU MET GLU ILE ASN SEQRES 5 A 1034 ASP HIS GLN LEU SER VAL ALA GLU LEU GLU GLN LYS TYR SEQRES 6 A 1034 GLN THR SER ALA THR LYS GLY LEU SER ALA SER LEU ALA SEQRES 7 A 1034 ALA GLU LEU LEU LEU ARG ASP GLY PRO ASN ALA LEU ARG SEQRES 8 A 1034 PRO PRO ARG GLY THR PRO GLU TYR VAL LYS PHE ALA ARG SEQRES 9 A 1034 GLN LEU ALA GLY GLY LEU GLN CYS LEU MET TRP VAL ALA SEQRES 10 A 1034 ALA ALA ILE CYS LEU ILE ALA PHE ALA ILE GLN ALA SER SEQRES 11 A 1034 GLU GLY ASP LEU THR THR ASP ASP ASN LEU TYR LEU ALA SEQRES 12 A 1034 LEU ALA LEU ILE ALA VAL VAL VAL VAL THR GLY CYS PHE SEQRES 13 A 1034 GLY TYR TYR GLN GLU PHE LYS SER THR ASN ILE ILE ALA SEQRES 14 A 1034 SER PHE LYS ASN LEU VAL PRO GLN GLN ALA THR VAL ILE SEQRES 15 A 1034 ARG ASP GLY ASP LYS PHE GLN ILE ASN ALA ASP GLN LEU SEQRES 16 A 1034 VAL VAL GLY ASP LEU VAL GLU MET LYS GLY GLY ASP ARG SEQRES 17 A 1034 VAL PRO ALA ASP ILE ARG ILE LEU GLN ALA GLN GLY ARG SEQRES 18 A 1034 LYS VAL ASP ASN SER SER LEU THR GLY GLU SER GLU PRO SEQRES 19 A 1034 GLN THR ARG SER PRO GLU CYS THR HIS GLU SER PRO LEU SEQRES 20 A 1034 GLU THR ARG ASN ILE ALA PHE PHE SER THR MET CYS LEU SEQRES 21 A 1034 GLU GLY THR ALA GLN GLY LEU VAL VAL ASN THR GLY ASP SEQRES 22 A 1034 ARG THR ILE ILE GLY ARG ILE ALA SER LEU ALA SER GLY SEQRES 23 A 1034 VAL GLU ASN GLU LYS THR PRO ILE ALA ILE GLU ILE GLU SEQRES 24 A 1034 HIS PHE VAL ASP ILE ILE ALA GLY LEU ALA ILE LEU PHE SEQRES 25 A 1034 GLY ALA THR PHE PHE ILE VAL ALA MET CYS ILE GLY TYR SEQRES 26 A 1034 THR PHE LEU ARG ALA MET VAL PHE PHE MET ALA ILE VAL SEQRES 27 A 1034 VAL ALA TYR VAL PRO GLU GLY LEU LEU ALA THR VAL THR SEQRES 28 A 1034 VAL CYS LEU SER LEU THR ALA LYS ARG LEU ALA SER LYS SEQRES 29 A 1034 ASN CYS VAL VAL LYS ASN LEU GLU ALA VAL GLU THR LEU SEQRES 30 A 1034 GLY SER THR SER VAL ILE CYS SER ASP LYS THR GLY THR SEQRES 31 A 1034 LEU THR GLN ASN ARG MET THR VAL SER HIS LEU TRP PHE SEQRES 32 A 1034 ASP ASN HIS ILE HIS SER ALA ASP THR THR GLU ASP GLN SEQRES 33 A 1034 SER GLY GLN THR PHE ASP GLN SER SER GLU THR TRP ARG SEQRES 34 A 1034 ALA LEU CYS ARG VAL LEU THR LEU CYS ASN ARG ALA ALA SEQRES 35 A 1034 PHE LYS SER GLY GLN ASP ALA VAL PRO VAL PRO LYS ARG SEQRES 36 A 1034 ILE VAL ILE GLY ASP ALA SER GLU THR ALA LEU LEU LYS SEQRES 37 A 1034 PHE SER GLU LEU THR LEU GLY ASN ALA MET GLY TYR ARG SEQRES 38 A 1034 GLU ARG PHE PRO LYS VAL CYS GLU ILE PRO PHE ASN SER SEQRES 39 A 1034 THR ASN LYS PHE GLN LEU SER ILE HIS THR LEU GLU ASP SEQRES 40 A 1034 PRO ARG ASP PRO ARG HIS VAL LEU VAL MET LYS GLY ALA SEQRES 41 A 1034 PRO GLU ARG VAL LEU GLU ARG CYS SER SER ILE LEU ILE SEQRES 42 A 1034 LYS GLY GLN GLU LEU PRO LEU ASP GLU GLN TRP ARG GLU SEQRES 43 A 1034 ALA PHE GLN THR ALA TYR LEU SER LEU GLY GLY LEU GLY SEQRES 44 A 1034 GLU ARG VAL LEU GLY PHE CYS GLN LEU TYR LEU SER GLU SEQRES 45 A 1034 LYS ASP TYR PRO PRO GLY TYR ALA PHE ASP VAL GLU ALA SEQRES 46 A 1034 MET ASN PHE PRO THR SER GLY LEU SER PHE ALA GLY LEU SEQRES 47 A 1034 VAL SER MET ILE ASP PRO PRO ARG ALA THR VAL PRO ASP SEQRES 48 A 1034 ALA VAL LEU LYS CYS ARG THR ALA GLY ILE ARG VAL ILE SEQRES 49 A 1034 MET VAL THR GLY ASP HIS PRO ILE THR ALA LYS ALA ILE SEQRES 50 A 1034 ALA ALA SER VAL GLY ILE ILE SER GLU GLY SER GLU THR SEQRES 51 A 1034 VAL GLU ASP ILE ALA ALA ARG LEU ARG VAL PRO VAL ASP SEQRES 52 A 1034 GLN VAL ASN ARG LYS ASP ALA ARG ALA CYS VAL ILE ASN SEQRES 53 A 1034 GLY MET GLN LEU LYS ASP MET ASP PRO SER GLU LEU VAL SEQRES 54 A 1034 GLU ALA LEU ARG THR HIS PRO GLU MET VAL PHE ALA ARG SEQRES 55 A 1034 THR SER PRO GLN GLN LYS LEU VAL ILE VAL GLU SER CYS SEQRES 56 A 1034 GLN ARG LEU GLY ALA ILE VAL ALA VAL THR GLY ASP GLY SEQRES 57 A 1034 VAL ASN ASP SER PRO ALA LEU LYS LYS ALA ASP ILE GLY SEQRES 58 A 1034 VAL ALA MET GLY ILE ALA GLY SER ASP ALA ALA LYS ASN SEQRES 59 A 1034 ALA ALA ASP MET ILE LEU LEU ASP ASP ASN PHE ALA SER SEQRES 60 A 1034 ILE VAL THR GLY VAL GLU GLN GLY ARG LEU ILE PHE ASP SEQRES 61 A 1034 ASN LEU LYS LYS SER ILE ALA TYR THR LEU THR LYS ASN SEQRES 62 A 1034 ILE PRO GLU LEU THR PRO TYR LEU ILE TYR ILE THR VAL SEQRES 63 A 1034 SER VAL PRO LEU PRO LEU GLY CYS ILE THR ILE LEU PHE SEQRES 64 A 1034 ILE GLU LEU CYS THR ASP ILE PHE PRO SER VAL SER LEU SEQRES 65 A 1034 ALA TYR GLU LYS ALA GLU SER ASP ILE MET HIS LEU ARG SEQRES 66 A 1034 PRO ARG ASN PRO LYS ARG ASP ARG LEU VAL ASN GLU PRO SEQRES 67 A 1034 LEU ALA ALA TYR SER TYR PHE GLN ILE GLY ALA ILE GLN SEQRES 68 A 1034 SER PHE ALA GLY PHE THR ASP TYR PHE THR ALA MET ALA SEQRES 69 A 1034 GLN GLU GLY TRP PHE PRO LEU LEU CYS VAL GLY LEU ARG SEQRES 70 A 1034 PRO GLN TRP GLU ASN HIS HIS LEU GLN ASP LEU GLN ASP SEQRES 71 A 1034 SER TYR GLY GLN GLU TRP THR PHE GLY GLN ARG LEU TYR SEQRES 72 A 1034 GLN GLN TYR THR CYS TYR THR VAL PHE PHE ILE SER ILE SEQRES 73 A 1034 GLU MET CYS GLN ILE ALA ASP VAL LEU ILE ARG LYS THR SEQRES 74 A 1034 ARG ARG LEU SER ALA PHE GLN GLN GLY PHE PHE ARG ASN SEQRES 75 A 1034 ARG ILE LEU VAL ILE ALA ILE VAL PHE GLN VAL CYS ILE SEQRES 76 A 1034 GLY CYS PHE LEU CYS TYR CYS PRO GLY MET PRO ASN ILE SEQRES 77 A 1034 PHE ASN PHE MET PRO ILE ARG PHE GLN TRP TRP LEU VAL SEQRES 78 A 1034 PRO MET PRO PHE GLY LEU LEU ILE PHE VAL TYR ASP GLU SEQRES 79 A 1034 ILE ARG LYS LEU GLY VAL ARG CYS CYS PRO GLY SER TRP SEQRES 80 A 1034 TRP ASP GLN GLU LEU TYR TYR SEQRES 1 B 290 MET ALA ALA LEU GLN GLU LYS LYS SER CYS SER GLN ARG SEQRES 2 B 290 MET GLU GLU PHE GLN ARG TYR CYS TRP ASN PRO ASP THR SEQRES 3 B 290 GLY GLN MET LEU GLY ARG THR LEU SER ARG TRP VAL TRP SEQRES 4 B 290 ILE SER LEU TYR TYR VAL ALA PHE TYR VAL VAL MET SER SEQRES 5 B 290 GLY ILE PHE ALA LEU CYS ILE TYR VAL LEU MET ARG THR SEQRES 6 B 290 ILE ASP PRO TYR THR PRO ASP TYR GLN ASP GLN LEU LYS SEQRES 7 B 290 SER PRO GLY VAL THR LEU ARG PRO ASP VAL TYR GLY GLU SEQRES 8 B 290 LYS GLY LEU ASP ILE SER TYR ASN VAL SER ASP SER THR SEQRES 9 B 290 THR TRP ALA GLY LEU ALA HIS THR LEU HIS ARG PHE LEU SEQRES 10 B 290 ALA GLY TYR SER PRO ALA ALA GLN GLU GLY SER ILE ASN SEQRES 11 B 290 CYS THR SER GLU LYS TYR PHE PHE GLN GLU SER PHE LEU SEQRES 12 B 290 ALA PRO ASN HIS THR LYS PHE SER CYS LYS PHE THR ALA SEQRES 13 B 290 ASP MET LEU GLN ASN CYS SER GLY ARG PRO ASP PRO THR SEQRES 14 B 290 PHE GLY PHE ALA GLU GLY LYS PRO CYS PHE ILE ILE LYS SEQRES 15 B 290 MET ASN ARG ILE VAL LYS PHE LEU PRO GLY ASN SER THR SEQRES 16 B 290 ALA PRO ARG VAL ASP CYS ALA PHE LEU ASP GLN PRO ARG SEQRES 17 B 290 ASP GLY PRO PRO LEU GLN VAL GLU TYR PHE PRO ALA ASN SEQRES 18 B 290 GLY THR TYR SER LEU HIS TYR PHE PRO TYR TYR GLY LYS SEQRES 19 B 290 LYS ALA GLN PRO HIS TYR SER ASN PRO LEU VAL ALA ALA SEQRES 20 B 290 LYS LEU LEU ASN VAL PRO ARG ASN ARG ASP VAL VAL ILE SEQRES 21 B 290 VAL CYS LYS ILE LEU ALA GLU HIS VAL SER PHE ASP ASN SEQRES 22 B 290 PRO HIS ASP PRO TYR GLU GLY LYS VAL GLU PHE LYS LEU SEQRES 23 B 290 LYS ILE GLN LYS HELIX 1 1 LEU A 41 LYS A 45 5 5 HELIX 2 2 SER A 56 GLN A 65 1 10 HELIX 3 3 SER A 73 GLY A 85 1 13 HELIX 4 4 PRO A 96 LEU A 105 1 10 HELIX 5 5 GLY A 108 GLY A 131 1 24 HELIX 6 6 ASP A 136 GLU A 160 1 25 HELIX 7 7 ASN A 165 VAL A 174 1 10 HELIX 8 8 ASP A 192 LEU A 194 5 3 HELIX 9 9 ASN A 224 GLY A 229 1 6 HELIX 10 10 THR A 270 ARG A 273 5 4 HELIX 11 11 THR A 274 VAL A 286 1 13 HELIX 12 12 THR A 291 GLY A 323 1 33 HELIX 13 13 THR A 325 VAL A 341 1 17 HELIX 14 14 GLY A 344 LYS A 363 1 20 HELIX 15 15 GLU A 371 LEU A 376 1 6 HELIX 16 16 GLY A 377 THR A 379 5 3 HELIX 17 17 LYS A 386 LEU A 390 1 5 HELIX 18 18 SER A 424 CYS A 437 1 14 HELIX 19 19 GLY A 445 VAL A 449 5 5 HELIX 20 20 ASP A 459 GLY A 474 1 16 HELIX 21 21 ASN A 475 PHE A 483 1 9 HELIX 22 22 ALA A 519 ARG A 526 1 8 HELIX 23 23 ASP A 540 LEU A 557 1 18 HELIX 24 24 THR A 607 ALA A 618 1 12 HELIX 25 25 HIS A 629 GLY A 641 1 13 HELIX 26 26 THR A 649 ARG A 658 1 10 HELIX 27 27 ASN A 665 ALA A 669 5 5 HELIX 28 28 GLY A 676 MET A 682 1 7 HELIX 29 29 ASP A 683 HIS A 694 1 12 HELIX 30 30 SER A 703 LEU A 717 1 15 HELIX 31 31 GLY A 727 ASN A 729 5 3 HELIX 32 32 ASP A 730 ALA A 737 1 8 HELIX 33 33 SER A 748 ALA A 755 1 8 HELIX 34 34 PHE A 764 LYS A 791 1 28 HELIX 35 35 ASN A 792 SER A 806 1 15 HELIX 36 36 GLY A 812 LEU A 821 1 10 HELIX 37 37 ASP A 824 LEU A 831 1 8 HELIX 38 38 ALA A 832 GLU A 834 5 3 HELIX 39 39 ASP A 839 LEU A 843 5 5 HELIX 40 40 ASN A 855 PHE A 864 1 10 HELIX 41 41 GLN A 865 GLY A 886 1 22 HELIX 42 42 PHE A 888 VAL A 893 1 6 HELIX 43 43 LEU A 895 ASN A 901 1 7 HELIX 44 44 THR A 916 ARG A 946 1 31 HELIX 45 45 SER A 952 GLY A 957 1 6 HELIX 46 46 ASN A 961 CYS A 981 1 21 HELIX 47 47 GLY A 983 PHE A 988 1 6 HELIX 48 48 ARG A 994 LEU A 999 1 6 HELIX 49 49 PRO A 1001 CYS A 1022 1 22 HELIX 50 50 SER A 1025 TYR A 1032 1 8 HELIX 51 51 ARG B 36 ALA B 46 1 11 HELIX 52 52 PHE B 47 THR B 65 1 19 HELIX 53 53 ASP B 75 SER B 79 5 5 HELIX 54 54 SER B 103 GLY B 119 1 17 HELIX 55 55 THR B 155 LEU B 159 5 5 HELIX 56 56 SER B 225 PHE B 229 5 5 SHEET 1 AA 6 ASP A 185 ASN A 190 0 SHEET 2 AA 6 GLN A 177 ARG A 182 -1 O ALA A 178 N ILE A 189 SHEET 3 AA 6 LEU A 199 LYS A 203 -1 O LEU A 199 N ILE A 181 SHEET 4 AA 6 MET A 257 ASN A 269 -1 O ALA A 263 N MET A 202 SHEET 5 AA 6 ASP A 211 ASP A 223 -1 O ASP A 211 N VAL A 268 SHEET 6 AA 6 PRO A 233 THR A 235 -1 O GLN A 234 N VAL A 222 SHEET 1 AB 6 ASP A 185 ASN A 190 0 SHEET 2 AB 6 GLN A 177 ARG A 182 -1 O ALA A 178 N ILE A 189 SHEET 3 AB 6 LEU A 199 LYS A 203 -1 O LEU A 199 N ILE A 181 SHEET 4 AB 6 MET A 257 ASN A 269 -1 O ALA A 263 N MET A 202 SHEET 5 AB 6 ASP A 211 ASP A 223 -1 O ASP A 211 N VAL A 268 SHEET 6 AB 6 ILE A 251 ALA A 252 -1 O ALA A 252 N ILE A 212 SHEET 1 AC 2 PRO A 233 THR A 235 0 SHEET 2 AC 2 ASP A 211 ASP A 223 -1 O VAL A 222 N GLN A 234 SHEET 1 AD 8 CYS A 365 VAL A 367 0 SHEET 2 AD 8 MET A 757 LEU A 759 -1 O ILE A 758 N VAL A 366 SHEET 3 AD 8 ILE A 739 MET A 743 1 O ALA A 742 N LEU A 759 SHEET 4 AD 8 VAL A 721 GLY A 725 1 O VAL A 723 N VAL A 741 SHEET 5 AD 8 VAL A 381 SER A 384 1 O VAL A 381 N ALA A 722 SHEET 6 AD 8 ARG A 621 VAL A 625 1 O ARG A 621 N ILE A 382 SHEET 7 AD 8 GLU A 696 ALA A 700 1 O MET A 697 N MET A 624 SHEET 8 AD 8 ALA A 671 ASN A 675 1 O CYS A 672 N VAL A 698 SHEET 1 AE 7 HIS A 405 SER A 408 0 SHEET 2 AE 7 THR A 396 PHE A 402 -1 O LEU A 400 N HIS A 407 SHEET 3 AE 7 LEU A 592 ILE A 601 -1 O LEU A 597 N TRP A 401 SHEET 4 AE 7 VAL A 561 TYR A 568 -1 O LEU A 562 N VAL A 598 SHEET 5 AE 7 HIS A 512 GLY A 518 -1 O LEU A 514 N LEU A 567 SHEET 6 AE 7 PHE A 497 THR A 503 -1 O GLN A 498 N LYS A 517 SHEET 7 AE 7 LYS A 485 ILE A 489 -1 N VAL A 486 O ILE A 501 SHEET 1 AF 5 HIS A 405 SER A 408 0 SHEET 2 AF 5 THR A 396 PHE A 402 -1 O LEU A 400 N HIS A 407 SHEET 3 AF 5 LEU A 592 ILE A 601 -1 O LEU A 597 N TRP A 401 SHEET 4 AF 5 CYS A 527 ILE A 532 -1 N SER A 528 O LEU A 592 SHEET 5 AF 5 GLN A 535 PRO A 538 1 O GLN A 535 N ILE A 532 SHEET 1 AG 2 ALA A 441 PHE A 442 0 SHEET 2 AG 2 VAL A 456 ILE A 457 -1 O ILE A 457 N ALA A 441 SHEET 1 AH 2 LEU A 907 GLN A 908 0 SHEET 2 AH 2 GLU A 914 TRP A 915 -1 O TRP A 915 N LEU A 907 SHEET 1 BA 4 VAL B 82 LEU B 84 0 SHEET 2 BA 4 ILE B 180 MET B 183 -1 O LYS B 182 N THR B 83 SHEET 3 BA 4 LEU B 244 LEU B 249 -1 O VAL B 245 N ILE B 181 SHEET 4 BA 4 VAL B 215 PHE B 218 -1 O GLU B 216 N LYS B 248 SHEET 1 BB 4 SER B 97 TYR B 98 0 SHEET 2 BB 4 PHE B 284 ILE B 288 1 O LYS B 287 N TYR B 98 SHEET 3 BB 4 VAL B 258 ILE B 264 -1 O VAL B 258 N LEU B 286 SHEET 4 BB 4 VAL B 199 ALA B 202 -1 O ASP B 200 N LYS B 263 SSBOND 1 CYS B 131 CYS B 152 1555 1555 2.02 SSBOND 2 CYS B 162 CYS B 178 1555 1555 2.03 SSBOND 3 CYS B 201 CYS B 262 1555 1555 2.04 CISPEP 1 PHE B 229 PRO B 230 0 -1.30 CRYST1 141.000 110.600 320.000 90.00 90.00 90.00 P 2 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007092 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003125 0.00000 MASTER 436 0 0 56 46 0 0 6 0 0 0 103 END