HEADER TRANSFERASE 27-MAY-11 2YKH TITLE SENSOR REGION OF A SENSOR HISTIDINE KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE SENSOR HISTIDINE KINASE PDTAS; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: GAF AND PAS DOMAINS, RESIDUES 1-303; COMPND 5 SYNONYM: PDTAS; COMPND 6 EC: 2.7.13.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CC1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM11RV3320CN-TERM KEYWDS TRANSFERASE, TWO-COMPONENT SYSTEM, GAF DOMAIN, PAS DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR J.PREU,S.PANJIKAR,P.MORTH,R.JAISWAL,P.KARUNAKAR,P.A.TUCKER REVDAT 3 17-JUL-19 2YKH 1 REMARK REVDAT 2 27-JUN-12 2YKH 1 JRNL REVDAT 1 06-JUN-12 2YKH 0 JRNL AUTH J.PREU,S.PANJIKAR,P.MORTH,R.JAISWAL,P.KARUNAKAR,P.A.TUCKER JRNL TITL THE SENSOR REGION OF THE UBIQUITOUS CYTOSOLIC SENSOR KINASE, JRNL TITL 2 PDTAS, CONTAINS PAS AND GAF DOMAIN SENSING MODULES. JRNL REF J.STRUCT.BIOL. V. 177 498 2012 JRNL REFN ISSN 1047-8477 JRNL PMID 22115998 JRNL DOI 10.1016/J.JSB.2011.11.012 REMARK 2 REMARK 2 RESOLUTION. 2.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 14178 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.299 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.200 REMARK 3 FREE R VALUE TEST SET COUNT : 932 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 855 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.38 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.4250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3971 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.15 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.457 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.349 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.231 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.880 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.826 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4045 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5515 ; 1.412 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 528 ; 8.131 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;35.018 ;22.832 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 628 ;19.071 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;19.343 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 661 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3068 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2629 ; 0.781 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4223 ; 1.449 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1416 ; 1.333 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1291 ; 2.409 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 286 2 REMARK 3 1 B 1 B 286 2 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 1053 ; 0.05 ; 0.05 REMARK 3 TIGHT POSITIONAL 1 B (A): 1053 ; 0.05 ; 0.05 REMARK 3 MEDIUM POSITIONAL 1 A (A): 914 ; 0.05 ; 0.50 REMARK 3 MEDIUM POSITIONAL 1 B (A): 914 ; 0.05 ; 0.50 REMARK 3 TIGHT THERMAL 1 A (A**2): 1053 ; 0.09 ; 0.50 REMARK 3 TIGHT THERMAL 1 B (A**2): 1053 ; 0.09 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 914 ; 0.11 ; 2.00 REMARK 3 MEDIUM THERMAL 1 B (A**2): 914 ; 0.11 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 2YKH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-MAY-11. REMARK 100 THE DEPOSITION ID IS D_1290048454. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8501 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR555 FLAT PANEL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15488 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 19.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.18000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AUTO-RICKSHAW REMARK 200 STARTING MODEL: PDB ENTRY 2YKF REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 36.46000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.31650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.76750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.31650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.46000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.76750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 MET A 1 REMARK 465 GLY A 89 REMARK 465 GLY A 90 REMARK 465 VAL A 91 REMARK 465 PRO A 92 REMARK 465 GLY A 93 REMARK 465 ARG A 94 REMARK 465 GLU A 95 REMARK 465 GLY A 96 REMARK 465 ALA A 97 REMARK 465 VAL A 98 REMARK 465 GLY A 99 REMARK 465 GLN A 100 REMARK 465 GLN A 101 REMARK 465 ASN A 102 REMARK 465 SER A 103 REMARK 465 CYS A 104 REMARK 465 GLN A 105 REMARK 465 HIS A 106 REMARK 465 ASP A 107 REMARK 465 GLY A 108 REMARK 465 ARG A 287 REMARK 465 ASP A 288 REMARK 465 ARG A 289 REMARK 465 ALA A 290 REMARK 465 LEU A 291 REMARK 465 ILE A 292 REMARK 465 SER A 293 REMARK 465 LYS A 294 REMARK 465 ASP A 295 REMARK 465 ALA A 296 REMARK 465 THR A 297 REMARK 465 ILE A 298 REMARK 465 ARG A 299 REMARK 465 GLU A 300 REMARK 465 ILE A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 GLY B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 GLY B 89 REMARK 465 GLY B 90 REMARK 465 VAL B 91 REMARK 465 PRO B 92 REMARK 465 GLY B 93 REMARK 465 ARG B 94 REMARK 465 GLU B 95 REMARK 465 GLY B 96 REMARK 465 ALA B 97 REMARK 465 VAL B 98 REMARK 465 GLY B 99 REMARK 465 GLN B 100 REMARK 465 GLN B 101 REMARK 465 ASN B 102 REMARK 465 SER B 103 REMARK 465 CYS B 104 REMARK 465 GLN B 105 REMARK 465 HIS B 106 REMARK 465 ASP B 107 REMARK 465 GLY B 108 REMARK 465 ARG B 287 REMARK 465 ASP B 288 REMARK 465 ARG B 289 REMARK 465 ALA B 290 REMARK 465 LEU B 291 REMARK 465 ILE B 292 REMARK 465 SER B 293 REMARK 465 LYS B 294 REMARK 465 ASP B 295 REMARK 465 ALA B 296 REMARK 465 THR B 297 REMARK 465 ILE B 298 REMARK 465 ARG B 299 REMARK 465 GLU B 300 REMARK 465 ILE B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 88 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 60 O HOH A 2004 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 163 C - N - CD ANGL. DEV. = -14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 48 -19.17 -42.51 REMARK 500 PRO A 131 157.64 -49.06 REMARK 500 PRO A 163 175.80 -24.73 REMARK 500 ASP A 164 -179.30 145.11 REMARK 500 ALA A 165 120.15 -19.00 REMARK 500 ASP A 167 63.07 -162.42 REMARK 500 MET A 170 -19.81 68.35 REMARK 500 SER A 171 142.33 -170.06 REMARK 500 LYS A 285 57.16 -100.41 REMARK 500 ASP B 48 -30.90 -30.31 REMARK 500 PRO B 163 -167.51 -66.57 REMARK 500 ASP B 164 -141.79 -167.80 REMARK 500 ALA B 165 115.74 -19.98 REMARK 500 ASP B 167 60.73 -162.91 REMARK 500 MET B 170 -17.73 65.87 REMARK 500 SER B 171 138.09 -172.14 REMARK 500 SER B 174 142.75 -34.17 REMARK 500 THR B 208 -159.85 -97.47 REMARK 500 LYS B 285 58.10 -100.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 PHE A 162 PRO A 163 -85.35 REMARK 500 PRO A 163 ASP A 164 -66.92 REMARK 500 PRO B 163 ASP B 164 -141.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YKF RELATED DB: PDB REMARK 900 SENSOR REGION OF A SENSOR HISTIDINE KINASE DBREF 2YKH A 1 303 UNP O05846 PDTAS_MYCTU 1 303 DBREF 2YKH B 1 303 UNP O05846 PDTAS_MYCTU 1 303 SEQADV 2YKH GLY A -1 UNP O05846 EXPRESSION TAG SEQADV 2YKH ALA A 0 UNP O05846 EXPRESSION TAG SEQADV 2YKH GLY B -1 UNP O05846 EXPRESSION TAG SEQADV 2YKH ALA B 0 UNP O05846 EXPRESSION TAG SEQRES 1 A 305 GLY ALA MET SER THR LEU GLY ASP LEU LEU ALA GLU HIS SEQRES 2 A 305 THR VAL LEU PRO GLY SER ALA VAL ASP HIS LEU HIS ALA SEQRES 3 A 305 VAL VAL GLY GLU TRP GLN LEU LEU ALA ASP LEU SER PHE SEQRES 4 A 305 ALA ASP TYR LEU MET TRP VAL ARG ARG ASP ASP GLY VAL SEQRES 5 A 305 LEU VAL CYS VAL ALA GLN CYS ARG PRO ASN THR GLY PRO SEQRES 6 A 305 THR VAL VAL HIS THR ASP ALA VAL GLY THR VAL VAL ALA SEQRES 7 A 305 ALA ASN SER MET PRO LEU VAL ALA ALA THR PHE SER GLY SEQRES 8 A 305 GLY VAL PRO GLY ARG GLU GLY ALA VAL GLY GLN GLN ASN SEQRES 9 A 305 SER CYS GLN HIS ASP GLY HIS SER VAL GLU VAL SER PRO SEQRES 10 A 305 VAL ARG PHE GLY ASP GLN VAL VAL ALA VAL LEU THR ARG SEQRES 11 A 305 HIS GLN PRO GLU LEU ALA ALA ARG ARG ARG SER GLY HIS SEQRES 12 A 305 LEU GLU THR ALA TYR ARG LEU CYS ALA THR ASP LEU LEU SEQRES 13 A 305 ARG MET LEU ALA GLU GLY THR PHE PRO ASP ALA GLY ASP SEQRES 14 A 305 VAL ALA MET SER ARG SER SER PRO ARG ALA GLY ASP GLY SEQRES 15 A 305 PHE ILE ARG LEU ASP VAL ASP GLY VAL VAL SER TYR ALA SEQRES 16 A 305 SER PRO ASN ALA LEU SER ALA TYR HIS ARG MET GLY LEU SEQRES 17 A 305 THR THR GLU LEU GLU GLY VAL ASN LEU ILE ASP ALA THR SEQRES 18 A 305 ARG PRO LEU ILE SER ASP PRO PHE GLU ALA HIS GLU VAL SEQRES 19 A 305 ASP GLU HIS VAL GLN ASP LEU LEU ALA GLY ASP GLY LYS SEQRES 20 A 305 GLY MET ARG MET GLU VAL ASP ALA GLY GLY ALA THR VAL SEQRES 21 A 305 LEU LEU ARG THR LEU PRO LEU VAL VAL ALA GLY ARG ASN SEQRES 22 A 305 VAL GLY ALA ALA ILE LEU ILE ARG ASP VAL THR GLU VAL SEQRES 23 A 305 LYS ARG ARG ASP ARG ALA LEU ILE SER LYS ASP ALA THR SEQRES 24 A 305 ILE ARG GLU ILE HIS HIS SEQRES 1 B 305 GLY ALA MET SER THR LEU GLY ASP LEU LEU ALA GLU HIS SEQRES 2 B 305 THR VAL LEU PRO GLY SER ALA VAL ASP HIS LEU HIS ALA SEQRES 3 B 305 VAL VAL GLY GLU TRP GLN LEU LEU ALA ASP LEU SER PHE SEQRES 4 B 305 ALA ASP TYR LEU MET TRP VAL ARG ARG ASP ASP GLY VAL SEQRES 5 B 305 LEU VAL CYS VAL ALA GLN CYS ARG PRO ASN THR GLY PRO SEQRES 6 B 305 THR VAL VAL HIS THR ASP ALA VAL GLY THR VAL VAL ALA SEQRES 7 B 305 ALA ASN SER MET PRO LEU VAL ALA ALA THR PHE SER GLY SEQRES 8 B 305 GLY VAL PRO GLY ARG GLU GLY ALA VAL GLY GLN GLN ASN SEQRES 9 B 305 SER CYS GLN HIS ASP GLY HIS SER VAL GLU VAL SER PRO SEQRES 10 B 305 VAL ARG PHE GLY ASP GLN VAL VAL ALA VAL LEU THR ARG SEQRES 11 B 305 HIS GLN PRO GLU LEU ALA ALA ARG ARG ARG SER GLY HIS SEQRES 12 B 305 LEU GLU THR ALA TYR ARG LEU CYS ALA THR ASP LEU LEU SEQRES 13 B 305 ARG MET LEU ALA GLU GLY THR PHE PRO ASP ALA GLY ASP SEQRES 14 B 305 VAL ALA MET SER ARG SER SER PRO ARG ALA GLY ASP GLY SEQRES 15 B 305 PHE ILE ARG LEU ASP VAL ASP GLY VAL VAL SER TYR ALA SEQRES 16 B 305 SER PRO ASN ALA LEU SER ALA TYR HIS ARG MET GLY LEU SEQRES 17 B 305 THR THR GLU LEU GLU GLY VAL ASN LEU ILE ASP ALA THR SEQRES 18 B 305 ARG PRO LEU ILE SER ASP PRO PHE GLU ALA HIS GLU VAL SEQRES 19 B 305 ASP GLU HIS VAL GLN ASP LEU LEU ALA GLY ASP GLY LYS SEQRES 20 B 305 GLY MET ARG MET GLU VAL ASP ALA GLY GLY ALA THR VAL SEQRES 21 B 305 LEU LEU ARG THR LEU PRO LEU VAL VAL ALA GLY ARG ASN SEQRES 22 B 305 VAL GLY ALA ALA ILE LEU ILE ARG ASP VAL THR GLU VAL SEQRES 23 B 305 LYS ARG ARG ASP ARG ALA LEU ILE SER LYS ASP ALA THR SEQRES 24 B 305 ILE ARG GLU ILE HIS HIS FORMUL 3 HOH *57(H2 O) HELIX 1 1 THR A 3 THR A 12 1 10 HELIX 2 2 PRO A 15 TRP A 29 1 15 HELIX 3 3 TRP A 29 PHE A 37 1 9 HELIX 4 4 ALA A 76 SER A 79 5 4 HELIX 5 5 MET A 80 PHE A 87 1 8 HELIX 6 6 GLU A 132 ARG A 136 5 5 HELIX 7 7 GLY A 140 GLU A 159 1 20 HELIX 8 8 ARG A 176 ASP A 179 5 4 HELIX 9 9 SER A 194 MET A 204 1 11 HELIX 10 10 ASN A 214 ARG A 220 1 7 HELIX 11 11 ASP A 225 LEU A 240 1 16 HELIX 12 12 THR B 3 THR B 12 1 10 HELIX 13 13 PRO B 15 TRP B 29 1 15 HELIX 14 14 TRP B 29 PHE B 37 1 9 HELIX 15 15 ALA B 76 SER B 79 5 4 HELIX 16 16 MET B 80 SER B 88 1 9 HELIX 17 17 GLU B 132 ARG B 136 5 5 HELIX 18 18 GLY B 140 GLU B 159 1 20 HELIX 19 19 ARG B 176 ASP B 179 5 4 HELIX 20 20 SER B 194 GLY B 205 1 12 HELIX 21 21 ASN B 214 ARG B 220 1 7 HELIX 22 22 ASP B 225 LEU B 240 1 16 SHEET 1 AA 5 VAL A 74 VAL A 75 0 SHEET 2 AA 5 LEU A 51 CYS A 57 -1 O LEU A 51 N VAL A 75 SHEET 3 AA 5 ASP A 39 ARG A 45 -1 O TYR A 40 N CYS A 57 SHEET 4 AA 5 GLN A 121 GLN A 130 -1 O VAL A 125 N TRP A 43 SHEET 5 AA 5 SER A 110 PHE A 118 -1 O SER A 110 N GLN A 130 SHEET 1 AB 5 VAL A 190 ALA A 193 0 SHEET 2 AB 5 PHE A 181 LEU A 184 -1 O ARG A 183 N SER A 191 SHEET 3 AB 5 ARG A 270 ASP A 280 -1 O ALA A 274 N LEU A 184 SHEET 4 AB 5 ALA A 256 VAL A 267 -1 O LEU A 259 N ARG A 279 SHEET 5 AB 5 ARG A 248 ALA A 253 -1 O MET A 249 N LEU A 260 SHEET 1 BA 5 VAL B 74 VAL B 75 0 SHEET 2 BA 5 LEU B 51 CYS B 57 -1 O LEU B 51 N VAL B 75 SHEET 3 BA 5 ASP B 39 ARG B 45 -1 O TYR B 40 N CYS B 57 SHEET 4 BA 5 GLN B 121 GLN B 130 -1 O VAL B 125 N TRP B 43 SHEET 5 BA 5 SER B 110 PHE B 118 -1 O SER B 110 N GLN B 130 SHEET 1 BB 5 VAL B 190 ALA B 193 0 SHEET 2 BB 5 PHE B 181 LEU B 184 -1 O ARG B 183 N SER B 191 SHEET 3 BB 5 ARG B 270 ASP B 280 -1 O ALA B 274 N LEU B 184 SHEET 4 BB 5 ALA B 256 VAL B 267 -1 O LEU B 259 N ARG B 279 SHEET 5 BB 5 ARG B 248 ALA B 253 -1 O MET B 249 N LEU B 260 CISPEP 1 PHE B 162 PRO B 163 0 -27.06 CRYST1 72.920 79.535 102.633 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013714 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012573 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009743 0.00000 MASTER 437 0 0 22 20 0 0 6 0 0 0 48 END