HEADER TRANSFERASE 11-MAY-10 2XE8 TITLE THE COMPLETE REACTION CYCLE OF HUMAN PHOSPHOGLYCERATE TITLE 2 KINASE: THE OPEN TERNARY COMPLEX WITH 3PG AND AMP-PNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOGLYCERATE KINASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PRIMER RECOGNITION PROTEIN 2, PRP 2, CELL COMPND 5 MIGRATION-INDUCING GENE 10 PROTEIN; COMPND 6 EC: 2.7.2.3; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22A KEYWDS TRANSITION STATE ANALOGUE, HEREDITARY HEMOLYTIC ANEMIA, KEYWDS 2 PHOSPHOPROTEIN, KINASE, GLYCOLYSIS, TRANSFERASE, PHOSPHORYL KEYWDS 3 TRANSFER, NUCLEOTIDE-BINDING, DOMAIN MOTIONS EXPDTA X-RAY DIFFRACTION AUTHOR M.J.CLIFF,N.J.BAXTER,G.M.BLACKBURN,A.MERLI,M.VAS,J.P.WALTHO, AUTHOR 2 M.W.BOWLER REVDAT 3 26-OCT-11 2XE8 1 JRNL REMARK VERSN REVDAT 2 27-APR-11 2XE8 1 JRNL REMARK REVDAT 1 19-JAN-11 2XE8 0 JRNL AUTH L.ZERRAD,A.MERLI,G.F.SCHRODER,A.VARGA,E.GRACZER, JRNL AUTH 2 P.PERNOT,A.ROUND,M.VAS,M.W.BOWLER JRNL TITL A SPRING LOADED RELEASE MECHANISM REGULATES DOMAIN JRNL TITL 2 MOVEMENT AND CATALYSIS IN PHOSPHOGLYCERATE KINASE. JRNL REF J.BIOL.CHEM. V. 286 14040 2011 JRNL REFN ISSN 0021-9258 JRNL PMID 21349853 JRNL DOI 10.1074/JBC.M110.206813 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.15 REMARK 3 NUMBER OF REFLECTIONS : 34947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.20038 REMARK 3 R VALUE (WORKING SET) : 0.19816 REMARK 3 FREE R VALUE : 0.24252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.0 REMARK 3 FREE R VALUE TEST SET COUNT : 1839 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.785 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.831 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2390 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.246 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.306 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3114 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.853 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07 REMARK 3 B22 (A**2) : -0.19 REMARK 3 B33 (A**2) : 0.26 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.141 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.136 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.526 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3209 ; 0.023 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4339 ; 1.959 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 418 ; 6.866 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 120 ;40.394 ;25.750 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 583 ;15.634 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;22.258 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 498 ; 0.141 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2336 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2053 ; 1.130 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3291 ; 1.854 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1156 ; 3.434 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1046 ; 5.228 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 416 REMARK 3 ORIGIN FOR THE GROUP (A): 1.1566 -16.9405 -23.7730 REMARK 3 T TENSOR REMARK 3 T11: 0.0282 T22: 0.0148 REMARK 3 T33: 0.0315 T12: 0.0163 REMARK 3 T13: 0.0238 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.2907 L22: 0.0367 REMARK 3 L33: 0.5135 L12: 0.1500 REMARK 3 L13: 0.7658 L23: 0.1225 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: 0.0116 S13: -0.0223 REMARK 3 S21: -0.0023 S22: -0.0072 S23: 0.0053 REMARK 3 S31: -0.0035 S32: -0.0105 S33: 0.0055 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF REMARK 3 TLS AND RESIDUAL U FACTORS. REMARK 4 REMARK 4 2XE8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-MAY-10. REMARK 100 THE PDBE ID CODE IS EBI-43896. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND 110 REMARK 200 OPTICS : GE 221 REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36815 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.79 REMARK 200 RESOLUTION RANGE LOW (A) : 20.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 2.9 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.10 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.7 REMARK 200 R MERGE FOR SHELL (I) : 0.29 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3C39 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.3 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, 100MM TRIS PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 29.66000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.58500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.66000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.58500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2129 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 1 REMARK 465 LEU A 2 REMARK 465 SER A 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG ARG A 349 O HOH A 2121 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 142 CD GLU A 142 OE1 -0.089 REMARK 500 GLU A 204 CD GLU A 204 OE2 -0.072 REMARK 500 ILE A 306 N ILE A 306 CA -0.150 REMARK 500 GLY A 337 C GLY A 337 O -0.098 REMARK 500 CYS A 378 CB CYS A 378 SG -0.096 REMARK 500 SER A 398 CB SER A 398 OG -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 109 67.62 -156.98 REMARK 500 ASN A 179 43.33 -105.18 REMARK 500 ALA A 308 138.97 81.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 3PG A1417 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A1418 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XE7 RELATED DB: PDB REMARK 900 THE COMPLETE REACTION CYCLE OF HUMAN REMARK 900 PHOSPHOGLYCERATE KINASE: THE OPEN TERNARY REMARK 900 COMPLEX WITH 3PG AND ADP REMARK 900 RELATED ID: 2XE6 RELATED DB: PDB REMARK 900 THE COMPLETE REACTION CYCLE OF HUMAN REMARK 900 PHOSPHOGLYCERATE KINASE: THE OPEN BINARY REMARK 900 COMPLEX WITH 3PG REMARK 900 RELATED ID: 2WZB RELATED DB: PDB REMARK 900 THE CATALYTICALLY ACTIVE FULLY CLOSED REMARK 900 CONFORMATION OF HUMAN PHOSPHOGLYCERATE KINASE REMARK 900 IN COMPLEX WITH ADP, 3PG AND MAGNESIUM TRIFLUORIDE REMARK 900 RELATED ID: 2WZC RELATED DB: PDB REMARK 900 THE CATALYTICALLY ACTIVE FULLY CLOSED REMARK 900 CONFORMATION OF HUMAN PHOSPHOGLYCERATE KINASE REMARK 900 IN COMPLEX WITH ADP, 3PG AND ALUMINIUM TETRAFLUORIDE REMARK 900 RELATED ID: 2X14 RELATED DB: PDB REMARK 900 THE CATALYTICALLY ACTIVE FULLY CLOSED REMARK 900 CONFORMATION OF HUMAN PHOSPHOGLYCERATE KINASE REMARK 900 K219A MUTANT IN COMPLEX WITH AMP-PCP AND 3PG REMARK 900 RELATED ID: 2WZD RELATED DB: PDB REMARK 900 THE CATALYTICALLY ACTIVE FULLY CLOSED REMARK 900 CONFORMATION OF HUMAN PHOSPHOGLYCERATE KINASE REMARK 900 K219A MUTANT IN COMPLEX WITH ADP, 3PG AND REMARK 900 ALUMINIUM TRIFLUORIDE REMARK 900 RELATED ID: 2X15 RELATED DB: PDB REMARK 900 THE CATALYTICALLY ACTIVE FULLY CLOSED REMARK 900 CONFORMATION OF HUMAN PHOSPHOGLYCERATE KINASE REMARK 900 IN COMPLEX WITH ADP AND 1,3-BISPHOSPHOGLYCERATE REMARK 900 RELATED ID: 2X13 RELATED DB: PDB REMARK 900 THE CATALYTICALLY ACTIVE FULLY CLOSED REMARK 900 CONFORMATION OF HUMAN PHOSPHOGLYCERATE KINASE REMARK 900 IN COMPLEX WITH ADP AND 3PHOSPHOGLYCERATE DBREF 2XE8 A 0 416 UNP P00558 PGK1_HUMAN 1 417 SEQRES 1 A 417 MET SER LEU SER ASN LYS LEU THR LEU ASP LYS LEU ASP SEQRES 2 A 417 VAL LYS GLY LYS ARG VAL VAL MET ARG VAL ASP PHE ASN SEQRES 3 A 417 VAL PRO MET LYS ASN ASN GLN ILE THR ASN ASN GLN ARG SEQRES 4 A 417 ILE LYS ALA ALA VAL PRO SER ILE LYS PHE CYS LEU ASP SEQRES 5 A 417 ASN GLY ALA LYS SER VAL VAL LEU MET SER HIS LEU GLY SEQRES 6 A 417 ARG PRO ASP GLY VAL PRO MET PRO ASP LYS TYR SER LEU SEQRES 7 A 417 GLU PRO VAL ALA VAL GLU LEU LYS SER LEU LEU GLY LYS SEQRES 8 A 417 ASP VAL LEU PHE LEU LYS ASP CYS VAL GLY PRO GLU VAL SEQRES 9 A 417 GLU LYS ALA CYS ALA ASN PRO ALA ALA GLY SER VAL ILE SEQRES 10 A 417 LEU LEU GLU ASN LEU ARG PHE HIS VAL GLU GLU GLU GLY SEQRES 11 A 417 LYS GLY LYS ASP ALA SER GLY ASN LYS VAL LYS ALA GLU SEQRES 12 A 417 PRO ALA LYS ILE GLU ALA PHE ARG ALA SER LEU SER LYS SEQRES 13 A 417 LEU GLY ASP VAL TYR VAL ASN ASP ALA PHE GLY THR ALA SEQRES 14 A 417 HIS ARG ALA HIS SER SER MET VAL GLY VAL ASN LEU PRO SEQRES 15 A 417 GLN LYS ALA GLY GLY PHE LEU MET LYS LYS GLU LEU ASN SEQRES 16 A 417 TYR PHE ALA LYS ALA LEU GLU SER PRO GLU ARG PRO PHE SEQRES 17 A 417 LEU ALA ILE LEU GLY GLY ALA LYS VAL ALA ASP LYS ILE SEQRES 18 A 417 GLN LEU ILE ASN ASN MET LEU ASP LYS VAL ASN GLU MET SEQRES 19 A 417 ILE ILE GLY GLY GLY MET ALA PHE THR PHE LEU LYS VAL SEQRES 20 A 417 LEU ASN ASN MET GLU ILE GLY THR SER LEU PHE ASP GLU SEQRES 21 A 417 GLU GLY ALA LYS ILE VAL LYS ASP LEU MET SER LYS ALA SEQRES 22 A 417 GLU LYS ASN GLY VAL LYS ILE THR LEU PRO VAL ASP PHE SEQRES 23 A 417 VAL THR ALA ASP LYS PHE ASP GLU ASN ALA LYS THR GLY SEQRES 24 A 417 GLN ALA THR VAL ALA SER GLY ILE PRO ALA GLY TRP MET SEQRES 25 A 417 GLY LEU ASP CYS GLY PRO GLU SER SER LYS LYS TYR ALA SEQRES 26 A 417 GLU ALA VAL THR ARG ALA LYS GLN ILE VAL TRP ASN GLY SEQRES 27 A 417 PRO VAL GLY VAL PHE GLU TRP GLU ALA PHE ALA ARG GLY SEQRES 28 A 417 THR LYS ALA LEU MET ASP GLU VAL VAL LYS ALA THR SER SEQRES 29 A 417 ARG GLY CYS ILE THR ILE ILE GLY GLY GLY ASP THR ALA SEQRES 30 A 417 THR CYS CYS ALA LYS TRP ASN THR GLU ASP LYS VAL SER SEQRES 31 A 417 HIS VAL SER THR GLY GLY GLY ALA SER LEU GLU LEU LEU SEQRES 32 A 417 GLU GLY LYS VAL LEU PRO GLY VAL ASP ALA LEU SER ASN SEQRES 33 A 417 ILE HET 3PG A1417 11 HET ACP A1418 31 HETNAM 3PG 3-PHOSPHOGLYCERIC ACID HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 2 3PG C3 H7 O7 P FORMUL 3 ACP C11 H18 N5 O12 P3 FORMUL 4 HOH *140(H2 O) HELIX 1 1 LEU A 8 LEU A 11 5 4 HELIX 2 2 ASN A 36 ASN A 52 1 17 HELIX 3 3 MET A 71 SER A 76 1 6 HELIX 4 4 LEU A 77 GLY A 89 1 13 HELIX 5 5 GLY A 100 ALA A 108 1 9 HELIX 6 6 ASN A 120 HIS A 124 5 5 HELIX 7 7 GLU A 142 LEU A 156 1 15 HELIX 8 8 ALA A 164 ALA A 168 5 5 HELIX 9 9 HIS A 172 GLY A 177 1 6 HELIX 10 10 GLY A 186 SER A 202 1 17 HELIX 11 11 VAL A 216 ASP A 218 5 3 HELIX 12 12 LYS A 219 ASP A 228 1 10 HELIX 13 13 MET A 239 ASN A 249 1 11 HELIX 14 14 ASP A 258 LYS A 263 1 6 HELIX 15 15 ILE A 264 GLY A 276 1 13 HELIX 16 16 GLY A 316 ALA A 330 1 15 HELIX 17 17 TRP A 344 PHE A 347 5 4 HELIX 18 18 ALA A 348 ARG A 364 1 17 HELIX 19 19 GLY A 372 TRP A 382 1 11 HELIX 20 20 THR A 384 VAL A 388 5 5 HELIX 21 21 GLY A 394 GLU A 403 1 10 HELIX 22 22 LEU A 407 ALA A 412 1 6 SHEET 1 AA 6 LEU A 93 PHE A 94 0 SHEET 2 AA 6 SER A 114 LEU A 117 1 O VAL A 115 N LEU A 93 SHEET 3 AA 6 SER A 56 MET A 60 1 O VAL A 57 N ILE A 116 SHEET 4 AA 6 ARG A 17 ARG A 21 1 O VAL A 18 N VAL A 58 SHEET 5 AA 6 VAL A 159 ASN A 162 1 O VAL A 159 N VAL A 19 SHEET 6 AA 6 LYS A 183 GLY A 185 1 O ALA A 184 N ASN A 162 SHEET 1 AB 2 MET A 28 LYS A 29 0 SHEET 2 AB 2 GLN A 32 ILE A 33 -1 O GLN A 32 N LYS A 29 SHEET 1 AC 2 LYS A 130 LYS A 132 0 SHEET 2 AC 2 LYS A 138 LYS A 140 -1 O VAL A 139 N GLY A 131 SHEET 1 AD 6 LYS A 278 THR A 280 0 SHEET 2 AD 6 GLU A 232 GLY A 236 1 O MET A 233 N THR A 280 SHEET 3 AD 6 PHE A 207 GLY A 212 1 O ALA A 209 N ILE A 234 SHEET 4 AD 6 GLN A 332 ASN A 336 1 O GLN A 332 N LEU A 208 SHEET 5 AD 6 ILE A 367 ILE A 370 1 O ILE A 367 N ILE A 333 SHEET 6 AD 6 HIS A 390 VAL A 391 1 O HIS A 390 N ILE A 370 SHEET 1 AE 3 THR A 297 THR A 301 0 SHEET 2 AE 3 ASP A 284 ALA A 288 -1 O PHE A 285 N ALA A 300 SHEET 3 AE 3 MET A 311 CYS A 315 -1 O MET A 311 N ALA A 288 CISPEP 1 ARG A 205 PRO A 206 0 6.25 CISPEP 2 ALA A 308 GLY A 309 0 -22.71 SITE 1 AC1 10 ASP A 23 ASN A 25 ARG A 38 HIS A 62 SITE 2 AC1 10 ARG A 65 ARG A 122 GLY A 166 ARG A 170 SITE 3 AC1 10 HOH A2061 HOH A2140 SITE 1 AC2 14 GLY A 213 ALA A 214 GLY A 237 GLY A 238 SITE 2 AC2 14 LEU A 256 GLY A 312 LEU A 313 GLY A 340 SITE 3 AC2 14 VAL A 341 GLU A 343 ASP A 374 HOH A2107 SITE 4 AC2 14 HOH A2118 HOH A2119 CRYST1 59.320 71.170 91.470 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016858 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014051 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010933 0.00000 MASTER 366 0 2 22 19 0 7 6 0 0 0 33 END