HEADER TRANSFERASE 22-JAN-10 2X38 TITLE THE CRYSTAL STRUCTURE OF THE MURINE CLASS IA PI 3-KINASE P110DELTA IN TITLE 2 COMPLEX WITH IC87114. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE 3-KINASE CATALYTIC COMPND 3 SUBUNIT DELTA ISOFORM; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: RESIDUES 106-1044; COMPND 6 SYNONYM: PI3-KINASE P110 SUBUNIT DELTA, PTDINS-3-KINASE P110, COMPND 7 P110DELTA, PI3K; COMPND 8 EC: 2.7.1.153; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: SF21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFASTBAC HTA KEYWDS PHOSPHOINOSITIDE 3-KINASE, ISOFORM-SPECIFIC INHIBITORS, CANCER, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BERNDT,S.MILLER,O.WILLIAMS,D.D.LEE,B.T.HOUSEMAN,J.I.PACOLD, AUTHOR 2 F.GORREC,W.-C.HON,Y.LIU,C.ROMMEL,P.GAILLARD,T.RUCKLE,M.K.SCHWARZ, AUTHOR 3 K.M.SHOKAT,J.P.SHAW,R.L.WILLIAMS REVDAT 3 24-APR-19 2X38 1 SOURCE REVDAT 2 13-JUL-11 2X38 1 VERSN REVDAT 1 02-FEB-10 2X38 0 SPRSDE 02-FEB-10 2X38 2WXE JRNL AUTH A.BERNDT,S.MILLER,O.WILLIAMS,D.D.LEE,B.T.HOUSEMAN, JRNL AUTH 2 J.I.PACOLD,F.GORREC,W.-C.HON,Y.LIU,C.ROMMEL,P.GAILLARD, JRNL AUTH 3 T.RUCKLE,M.K.SCHWARZ,K.M.SHOKAT,J.P.SHAW,R.L.WILLIAMS JRNL TITL THE P110D STRUCTURE: MECHANISMS FOR SELECTIVITY AND POTENCY JRNL TITL 2 OF NEW PI(3)K INHIBITORS JRNL REF NAT.CHEM.BIOL. V. 6 117 2010 JRNL REFN ISSN 1552-4450 JRNL PMID 20081827 JRNL DOI 10.1038/NCHEMBIO.293 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0046 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 50232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.240 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1578 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3715 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 107 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6633 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 40 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.26000 REMARK 3 B22 (A**2) : 0.41000 REMARK 3 B33 (A**2) : -0.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.04000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.286 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.227 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.173 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.695 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.913 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6817 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9203 ; 1.250 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 813 ; 5.448 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 316 ;35.047 ;23.956 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1231 ;16.653 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;18.900 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1012 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5079 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3187 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4696 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 209 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 43 ; 0.217 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.282 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4097 ; 0.536 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6586 ; 0.998 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2720 ; 1.634 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2617 ; 2.527 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 189 REMARK 3 ORIGIN FOR THE GROUP (A): -14.0080 33.5290 20.3370 REMARK 3 T TENSOR REMARK 3 T11: 0.2680 T22: 0.0998 REMARK 3 T33: 0.2500 T12: 0.0933 REMARK 3 T13: 0.0032 T23: 0.0470 REMARK 3 L TENSOR REMARK 3 L11: 2.3772 L22: 1.0246 REMARK 3 L33: 3.8288 L12: 0.0857 REMARK 3 L13: 1.2685 L23: 0.1055 REMARK 3 S TENSOR REMARK 3 S11: -0.0505 S12: 0.1802 S13: 0.3386 REMARK 3 S21: -0.0456 S22: 0.0398 S23: -0.0463 REMARK 3 S31: -0.6501 S32: -0.1128 S33: 0.0106 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 190 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 9.1780 26.3960 38.1400 REMARK 3 T TENSOR REMARK 3 T11: 0.2361 T22: 0.3622 REMARK 3 T33: 0.3511 T12: 0.0293 REMARK 3 T13: -0.0807 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 4.3508 L22: 2.5479 REMARK 3 L33: 4.2343 L12: 0.3261 REMARK 3 L13: 1.5041 L23: -0.4828 REMARK 3 S TENSOR REMARK 3 S11: 0.2865 S12: -0.1055 S13: -0.3262 REMARK 3 S21: 0.2502 S22: -0.0639 S23: -0.3227 REMARK 3 S31: -0.1347 S32: 0.8912 S33: -0.2226 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 317 A 494 REMARK 3 ORIGIN FOR THE GROUP (A): -48.8430 24.7840 15.2950 REMARK 3 T TENSOR REMARK 3 T11: 0.1734 T22: 1.3895 REMARK 3 T33: 0.2101 T12: 0.3048 REMARK 3 T13: -0.0254 T23: 0.1395 REMARK 3 L TENSOR REMARK 3 L11: 3.1619 L22: 1.8518 REMARK 3 L33: 5.9053 L12: -0.2403 REMARK 3 L13: -1.5166 L23: 0.9499 REMARK 3 S TENSOR REMARK 3 S11: 0.0291 S12: 0.9908 S13: 0.3258 REMARK 3 S21: -0.1630 S22: -0.0036 S23: 0.2470 REMARK 3 S31: -0.2142 S32: -2.2071 S33: -0.0254 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 511 A 677 REMARK 3 ORIGIN FOR THE GROUP (A): -31.9500 26.8380 33.6930 REMARK 3 T TENSOR REMARK 3 T11: 0.2135 T22: 0.3665 REMARK 3 T33: 0.2011 T12: 0.2446 REMARK 3 T13: 0.0140 T23: 0.0230 REMARK 3 L TENSOR REMARK 3 L11: 2.5700 L22: 0.7214 REMARK 3 L33: 2.5512 L12: -0.1213 REMARK 3 L13: -1.0689 L23: 0.0630 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.1880 S13: 0.2695 REMARK 3 S21: 0.1612 S22: 0.0587 S23: 0.1663 REMARK 3 S31: -0.4911 S32: -0.6588 S33: -0.0591 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 678 A 1027 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2760 2.3170 30.7770 REMARK 3 T TENSOR REMARK 3 T11: 0.0910 T22: 0.0480 REMARK 3 T33: 0.0734 T12: -0.0015 REMARK 3 T13: -0.0188 T23: -0.0271 REMARK 3 L TENSOR REMARK 3 L11: 0.8413 L22: 1.3861 REMARK 3 L33: 3.0914 L12: -0.0688 REMARK 3 L13: -0.4652 L23: -0.3889 REMARK 3 S TENSOR REMARK 3 S11: -0.0520 S12: 0.0813 S13: -0.1061 REMARK 3 S21: 0.0990 S22: 0.0360 S23: 0.0411 REMARK 3 S31: 0.3875 S32: -0.2361 S33: 0.0161 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY REMARK 4 REMARK 4 2X38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JAN-10. REMARK 100 THE DEPOSITION ID IS D_1290042606. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JAN-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : TRUNCATE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51811 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 56.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.700 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.530 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.9200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.22 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.56 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2RD0 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (V/V) GLYCEROL, 10% (V/V) PEG 4K, REMARK 280 30 MM NANO3, 30 MM NA2HPO4, 30 MM (NH4)2SO4, 100 MM IMIDAZOLE PH REMARK 280 6.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.21000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.33000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.21000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.33000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 105 REMARK 465 GLY A 106 REMARK 465 ASP A 107 REMARK 465 ARG A 108 REMARK 465 SER A 174 REMARK 465 ALA A 175 REMARK 465 ARG A 176 REMARK 465 GLY A 177 REMARK 465 TRP A 178 REMARK 465 ARG A 179 REMARK 465 ALA A 180 REMARK 465 GLY A 181 REMARK 465 LEU A 182 REMARK 465 LEU A 183 REMARK 465 ARG A 184 REMARK 465 VAL A 185 REMARK 465 SER A 186 REMARK 465 PRO A 231 REMARK 465 LEU A 232 REMARK 465 VAL A 233 REMARK 465 GLU A 234 REMARK 465 PRO A 292 REMARK 465 ALA A 293 REMARK 465 PRO A 294 REMARK 465 GLN A 295 REMARK 465 VAL A 296 REMARK 465 GLN A 297 REMARK 465 LYS A 298 REMARK 465 PRO A 299 REMARK 465 ARG A 300 REMARK 465 ALA A 301 REMARK 465 LYS A 302 REMARK 465 PRO A 303 REMARK 465 PRO A 304 REMARK 465 PRO A 305 REMARK 465 ILE A 306 REMARK 465 PRO A 307 REMARK 465 ALA A 308 REMARK 465 LYS A 309 REMARK 465 LYS A 310 REMARK 465 PRO A 311 REMARK 465 SER A 312 REMARK 465 SER A 313 REMARK 465 VAL A 314 REMARK 465 SER A 315 REMARK 465 ASP A 336 REMARK 465 GLU A 337 REMARK 465 ARG A 338 REMARK 465 GLU A 399 REMARK 465 LYS A 400 REMARK 465 ALA A 401 REMARK 465 LYS A 402 REMARK 465 LYS A 403 REMARK 465 ALA A 404 REMARK 465 ARG A 405 REMARK 465 SER A 406 REMARK 465 THR A 407 REMARK 465 LYS A 408 REMARK 465 LYS A 409 REMARK 465 LYS A 410 REMARK 465 SER A 411 REMARK 465 LYS A 412 REMARK 465 LYS A 413 REMARK 465 ALA A 414 REMARK 465 PRO A 446 REMARK 465 ASP A 447 REMARK 465 GLU A 448 REMARK 465 LYS A 449 REMARK 465 GLY A 450 REMARK 465 GLU A 451 REMARK 465 PRO A 480 REMARK 465 HIS A 481 REMARK 465 GLY A 495 REMARK 465 ARG A 496 REMARK 465 HIS A 497 REMARK 465 GLY A 498 REMARK 465 GLU A 499 REMARK 465 ARG A 500 REMARK 465 GLY A 501 REMARK 465 ARG A 502 REMARK 465 ILE A 503 REMARK 465 THR A 504 REMARK 465 GLU A 505 REMARK 465 GLU A 506 REMARK 465 GLU A 507 REMARK 465 GLN A 508 REMARK 465 LEU A 509 REMARK 465 GLN A 510 REMARK 465 ARG A 518 REMARK 465 GLY A 519 REMARK 465 SER A 520 REMARK 465 GLY A 521 REMARK 465 LYS A 920 REMARK 465 THR A 921 REMARK 465 LYS A 922 REMARK 465 PHE A 923 REMARK 465 GLY A 924 REMARK 465 ILE A 925 REMARK 465 ASN A 926 REMARK 465 ARG A 927 REMARK 465 GLU A 928 REMARK 465 LYS A 1028 REMARK 465 THR A 1029 REMARK 465 LYS A 1030 REMARK 465 VAL A 1031 REMARK 465 ASN A 1032 REMARK 465 TRP A 1033 REMARK 465 LEU A 1034 REMARK 465 ALA A 1035 REMARK 465 HIS A 1036 REMARK 465 ASN A 1037 REMARK 465 VAL A 1038 REMARK 465 SER A 1039 REMARK 465 LYS A 1040 REMARK 465 ASP A 1041 REMARK 465 ASN A 1042 REMARK 465 ARG A 1043 REMARK 465 GLN A 1044 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 452 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 209 -5.97 -59.38 REMARK 500 ARG A 229 13.15 58.36 REMARK 500 ILE A 328 -71.11 -81.53 REMARK 500 ASN A 334 -166.20 -167.00 REMARK 500 SER A 367 176.59 117.48 REMARK 500 ILE A 418 -52.37 -126.49 REMARK 500 VAL A 478 -6.88 -50.95 REMARK 500 ASP A 736 101.61 -173.79 REMARK 500 GLU A 742 -100.74 -82.70 REMARK 500 LYS A 755 -112.95 54.12 REMARK 500 ASN A 949 71.63 -161.66 REMARK 500 ALA A1003 55.05 39.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IC8 A 2028 DBREF 2X38 A 105 105 PDB 2X38 2X38 105 105 DBREF 2X38 A 106 1044 UNP Q3UDT3 Q3UDT3_MOUSE 106 1044 SEQRES 1 A 940 GLY GLY ASP ARG VAL LYS LYS LEU ILE ASN SER GLN ILE SEQRES 2 A 940 SER LEU LEU ILE GLY LYS GLY LEU HIS GLU PHE ASP SER SEQRES 3 A 940 LEU ARG ASP PRO GLU VAL ASN ASP PHE ARG THR LYS MET SEQRES 4 A 940 ARG GLN PHE CYS GLU GLU ALA ALA ALA HIS ARG GLN GLN SEQRES 5 A 940 LEU GLY TRP VAL GLU TRP LEU GLN TYR SER PHE PRO LEU SEQRES 6 A 940 GLN LEU GLU PRO SER ALA ARG GLY TRP ARG ALA GLY LEU SEQRES 7 A 940 LEU ARG VAL SER ASN ARG ALA LEU LEU VAL ASN VAL LYS SEQRES 8 A 940 PHE GLU GLY SER GLU GLU SER PHE THR PHE GLN VAL SER SEQRES 9 A 940 THR LYS ASP MET PRO LEU ALA LEU MET ALA CYS ALA LEU SEQRES 10 A 940 ARG LYS LYS ALA THR VAL PHE ARG GLN PRO LEU VAL GLU SEQRES 11 A 940 GLN PRO GLU GLU TYR ALA LEU GLN VAL ASN GLY ARG HIS SEQRES 12 A 940 GLU TYR LEU TYR GLY ASN TYR PRO LEU CYS HIS PHE GLN SEQRES 13 A 940 TYR ILE CYS SER CYS LEU HIS SER GLY LEU THR PRO HIS SEQRES 14 A 940 LEU THR MET VAL HIS SER SER SER ILE LEU ALA MET ARG SEQRES 15 A 940 ASP GLU GLN SER ASN PRO ALA PRO GLN VAL GLN LYS PRO SEQRES 16 A 940 ARG ALA LYS PRO PRO PRO ILE PRO ALA LYS LYS PRO SER SEQRES 17 A 940 SER VAL SER LEU TRP SER LEU GLU GLN PRO PHE SER ILE SEQRES 18 A 940 GLU LEU ILE GLU GLY ARG LYS VAL ASN ALA ASP GLU ARG SEQRES 19 A 940 MET LYS LEU VAL VAL GLN ALA GLY LEU PHE HIS GLY ASN SEQRES 20 A 940 GLU MET LEU CYS LYS THR VAL SER SER SER GLU VAL ASN SEQRES 21 A 940 VAL CYS SER GLU PRO VAL TRP LYS GLN ARG LEU GLU PHE SEQRES 22 A 940 ASP ILE SER VAL CYS ASP LEU PRO ARG MET ALA ARG LEU SEQRES 23 A 940 CYS PHE ALA LEU TYR ALA VAL VAL GLU LYS ALA LYS LYS SEQRES 24 A 940 ALA ARG SER THR LYS LYS LYS SER LYS LYS ALA ASP CYS SEQRES 25 A 940 PRO ILE ALA TRP ALA ASN LEU MET LEU PHE ASP TYR LYS SEQRES 26 A 940 ASP GLN LEU LYS THR GLY GLU ARG CYS LEU TYR MET TRP SEQRES 27 A 940 PRO SER VAL PRO ASP GLU LYS GLY GLU LEU LEU ASN PRO SEQRES 28 A 940 ALA GLY THR VAL ARG GLY ASN PRO ASN THR GLU SER ALA SEQRES 29 A 940 ALA ALA LEU VAL ILE TYR LEU PRO GLU VAL ALA PRO HIS SEQRES 30 A 940 PRO VAL TYR PHE PRO ALA LEU GLU LYS ILE LEU GLU LEU SEQRES 31 A 940 GLY ARG HIS GLY GLU ARG GLY ARG ILE THR GLU GLU GLU SEQRES 32 A 940 GLN LEU GLN LEU ARG GLU ILE LEU GLU ARG ARG GLY SER SEQRES 33 A 940 GLY GLU LEU TYR GLU HIS GLU LYS ASP LEU VAL TRP LYS SEQRES 34 A 940 MET ARG HIS GLU VAL GLN GLU HIS PHE PRO GLU ALA LEU SEQRES 35 A 940 ALA ARG LEU LEU LEU VAL THR LYS TRP ASN LYS HIS GLU SEQRES 36 A 940 ASP VAL ALA GLN MET LEU TYR LEU LEU CYS SER TRP PRO SEQRES 37 A 940 GLU LEU PRO VAL LEU SER ALA LEU GLU LEU LEU ASP PHE SEQRES 38 A 940 SER PHE PRO ASP CYS TYR VAL GLY SER PHE ALA ILE LYS SEQRES 39 A 940 SER LEU ARG LYS LEU THR ASP ASP GLU LEU PHE GLN TYR SEQRES 40 A 940 LEU LEU GLN LEU VAL GLN VAL LEU LYS TYR GLU SER TYR SEQRES 41 A 940 LEU ASP CYS GLU LEU THR LYS PHE LEU LEU GLY ARG ALA SEQRES 42 A 940 LEU ALA ASN ARG LYS ILE GLY HIS PHE LEU PHE TRP HIS SEQRES 43 A 940 LEU ARG SER GLU MET HIS VAL PRO SER VAL ALA LEU ARG SEQRES 44 A 940 PHE GLY LEU ILE MET GLU ALA TYR CYS ARG GLY SER THR SEQRES 45 A 940 HIS HIS MET LYS VAL LEU MET LYS GLN GLY GLU ALA LEU SEQRES 46 A 940 SER LYS LEU LYS ALA LEU ASN ASP PHE VAL LYS VAL SER SEQRES 47 A 940 SER GLN LYS THR THR LYS PRO GLN THR LYS GLU MET MET SEQRES 48 A 940 HIS MET CYS MET ARG GLN GLU THR TYR MET GLU ALA LEU SEQRES 49 A 940 SER HIS LEU GLN SER PRO LEU ASP PRO SER THR LEU LEU SEQRES 50 A 940 GLU GLU VAL CYS VAL GLU GLN CYS THR PHE MET ASP SER SEQRES 51 A 940 LYS MET LYS PRO LEU TRP ILE MET TYR SER SER GLU GLU SEQRES 52 A 940 ALA GLY SER ALA GLY ASN VAL GLY ILE ILE PHE LYS ASN SEQRES 53 A 940 GLY ASP ASP LEU ARG GLN ASP MET LEU THR LEU GLN MET SEQRES 54 A 940 ILE GLN LEU MET ASP VAL LEU TRP LYS GLN GLU GLY LEU SEQRES 55 A 940 ASP LEU ARG MET THR PRO TYR GLY CYS LEU PRO THR GLY SEQRES 56 A 940 ASP ARG THR GLY LEU ILE GLU VAL VAL LEU HIS SER ASP SEQRES 57 A 940 THR ILE ALA ASN ILE GLN LEU ASN LYS SER ASN MET ALA SEQRES 58 A 940 ALA THR ALA ALA PHE ASN LYS ASP ALA LEU LEU ASN TRP SEQRES 59 A 940 LEU LYS SER LYS ASN PRO GLY GLU ALA LEU ASP ARG ALA SEQRES 60 A 940 ILE GLU GLU PHE THR LEU SER CYS ALA GLY TYR CYS VAL SEQRES 61 A 940 ALA THR TYR VAL LEU GLY ILE GLY ASP ARG HIS SER ASP SEQRES 62 A 940 ASN ILE MET ILE ARG GLU SER GLY GLN LEU PHE HIS ILE SEQRES 63 A 940 ASP PHE GLY HIS PHE LEU GLY ASN PHE LYS THR LYS PHE SEQRES 64 A 940 GLY ILE ASN ARG GLU ARG VAL PRO PHE ILE LEU THR TYR SEQRES 65 A 940 ASP PHE VAL HIS VAL ILE GLN GLN GLY LYS THR ASN ASN SEQRES 66 A 940 SER GLU LYS PHE GLU ARG PHE ARG GLY TYR CYS GLU ARG SEQRES 67 A 940 ALA TYR THR ILE LEU ARG ARG HIS GLY LEU LEU PHE LEU SEQRES 68 A 940 HIS LEU PHE ALA LEU MET ARG ALA ALA GLY LEU PRO GLU SEQRES 69 A 940 LEU SER CYS SER LYS ASP ILE GLN TYR LEU LYS ASP SER SEQRES 70 A 940 LEU ALA LEU GLY LYS THR GLU GLU GLU ALA LEU LYS HIS SEQRES 71 A 940 PHE ARG VAL LYS PHE ASN GLU ALA LEU ARG GLU SER TRP SEQRES 72 A 940 LYS THR LYS VAL ASN TRP LEU ALA HIS ASN VAL SER LYS SEQRES 73 A 940 ASP ASN ARG GLN HET IC8 A2028 30 HETNAM IC8 2-[(6-AMINO-9H-PURIN-9-YL)METHYL]-5-METHYL-3-(2- HETNAM 2 IC8 METHYLPHENYL)QUINAZOLIN-4(3H)-ONE FORMUL 2 IC8 C22 H19 N7 O FORMUL 3 HOH *40(H2 O) HELIX 1 1 VAL A 109 GLY A 122 1 14 HELIX 2 2 LEU A 125 LEU A 131 1 7 HELIX 3 3 ASP A 133 GLN A 155 1 23 HELIX 4 4 GLY A 158 PHE A 167 1 10 HELIX 5 5 MET A 212 PHE A 228 1 17 HELIX 6 6 GLN A 235 GLU A 237 5 3 HELIX 7 7 PRO A 255 HIS A 258 5 4 HELIX 8 8 PHE A 259 GLY A 269 1 11 HELIX 9 9 SER A 279 GLN A 289 1 11 HELIX 10 10 CYS A 382 LEU A 384 5 3 HELIX 11 11 ALA A 487 LEU A 494 1 8 HELIX 12 12 TYR A 524 MET A 534 1 11 HELIX 13 13 MET A 534 PHE A 542 1 9 HELIX 14 14 ALA A 545 LEU A 551 1 7 HELIX 15 15 LYS A 557 CYS A 569 1 13 HELIX 16 16 PRO A 575 LEU A 582 1 8 HELIX 17 17 ASP A 589 ARG A 601 1 13 HELIX 18 18 THR A 604 LYS A 620 1 17 HELIX 19 19 CYS A 627 ASN A 640 1 14 HELIX 20 20 ASN A 640 SER A 653 1 14 HELIX 21 21 VAL A 657 SER A 675 1 19 HELIX 22 22 SER A 675 THR A 706 1 32 HELIX 23 23 THR A 707 ARG A 720 1 14 HELIX 24 24 GLN A 721 SER A 729 1 9 HELIX 25 25 VAL A 746 CYS A 749 5 4 HELIX 26 26 ALA A 768 ASN A 773 5 6 HELIX 27 27 LEU A 784 GLU A 804 1 21 HELIX 28 28 ILE A 834 LEU A 839 1 6 HELIX 29 29 PHE A 850 LYS A 852 5 3 HELIX 30 30 ASP A 853 ASN A 863 1 11 HELIX 31 31 GLU A 866 GLY A 890 1 25 HELIX 32 32 THR A 935 GLN A 943 1 9 HELIX 33 33 ASN A 949 HIS A 970 1 22 HELIX 34 34 HIS A 970 ARG A 982 1 13 HELIX 35 35 ALA A 983 GLY A 985 5 3 HELIX 36 36 CYS A 991 LEU A 1002 1 12 HELIX 37 37 THR A 1007 SER A 1026 1 20 SHEET 1 AA 5 SER A 202 SER A 208 0 SHEET 2 AA 5 ALA A 189 PHE A 196 -1 O LEU A 190 N VAL A 207 SHEET 3 AA 5 HIS A 273 HIS A 278 1 O LEU A 274 N LYS A 195 SHEET 4 AA 5 TYR A 239 VAL A 243 -1 O ALA A 240 N VAL A 277 SHEET 5 AA 5 TYR A 249 LEU A 250 -1 O LEU A 250 N LEU A 241 SHEET 1 AB 4 VAL A 370 SER A 380 0 SHEET 2 AB 4 PRO A 322 GLU A 329 -1 O PHE A 323 N PHE A 377 SHEET 3 AB 4 ALA A 470 LEU A 475 -1 O VAL A 472 N ILE A 328 SHEET 4 AB 4 GLY A 435 TYR A 440 -1 O GLY A 435 N LEU A 475 SHEET 1 AC 2 GLU A 352 MET A 353 0 SHEET 2 AC 2 LYS A 340 HIS A 349 -1 O HIS A 349 N GLU A 352 SHEET 1 AD 2 VAL A 358 SER A 359 0 SHEET 2 AD 2 LYS A 340 HIS A 349 -1 O ALA A 345 N VAL A 358 SHEET 1 AE 2 VAL A 363 ASN A 364 0 SHEET 2 AE 2 LYS A 340 HIS A 349 -1 O LEU A 341 N VAL A 363 SHEET 1 AF 5 TRP A 442 PRO A 443 0 SHEET 2 AF 5 CYS A 416 MET A 424 -1 O TRP A 420 N TRP A 442 SHEET 3 AF 5 ARG A 389 VAL A 397 -1 O LEU A 390 N LEU A 423 SHEET 4 AF 5 LYS A 340 HIS A 349 -1 O LYS A 340 N VAL A 397 SHEET 5 AF 5 GLU A 352 MET A 353 -1 O GLU A 352 N HIS A 349 SHEET 1 AG 5 TRP A 442 PRO A 443 0 SHEET 2 AG 5 CYS A 416 MET A 424 -1 O TRP A 420 N TRP A 442 SHEET 3 AG 5 ARG A 389 VAL A 397 -1 O LEU A 390 N LEU A 423 SHEET 4 AG 5 LYS A 340 HIS A 349 -1 O LYS A 340 N VAL A 397 SHEET 5 AG 5 VAL A 358 SER A 359 -1 O VAL A 358 N ALA A 345 SHEET 1 AH 2 LEU A 731 SER A 733 0 SHEET 2 AH 2 ASP A 736 LEU A 741 -1 N ASP A 736 O SER A 733 SHEET 1 AI 2 GLU A 743 VAL A 744 0 SHEET 2 AI 2 LEU A 759 SER A 764 -1 O SER A 764 N GLU A 743 SHEET 1 AJ 2 THR A 750 PHE A 751 0 SHEET 2 AJ 2 LEU A 759 SER A 764 -1 O TRP A 760 N THR A 750 SHEET 1 AK 5 CYS A 815 GLY A 819 0 SHEET 2 AK 5 THR A 822 GLU A 826 -1 O THR A 822 N THR A 818 SHEET 3 AK 5 VAL A 774 ASN A 780 -1 O ILE A 777 N ILE A 825 SHEET 4 AK 5 LEU A 759 SER A 764 -1 O LEU A 759 N PHE A 778 SHEET 5 AK 5 THR A 750 PHE A 751 -1 O THR A 750 N TRP A 760 SHEET 1 AL 5 CYS A 815 GLY A 819 0 SHEET 2 AL 5 THR A 822 GLU A 826 -1 O THR A 822 N THR A 818 SHEET 3 AL 5 VAL A 774 ASN A 780 -1 O ILE A 777 N ILE A 825 SHEET 4 AL 5 LEU A 759 SER A 764 -1 O LEU A 759 N PHE A 778 SHEET 5 AL 5 GLU A 743 VAL A 744 -1 O GLU A 743 N SER A 764 SHEET 1 AM 3 SER A 831 THR A 833 0 SHEET 2 AM 3 ILE A 899 ARG A 902 -1 O ILE A 901 N ASP A 832 SHEET 3 AM 3 LEU A 907 HIS A 909 -1 O PHE A 908 N MET A 900 CISPEP 1 SER A 367 GLU A 368 0 -6.75 CISPEP 2 THR A 434 GLY A 435 0 -7.73 SITE 1 AC1 14 PHE A 751 MET A 752 PRO A 758 TRP A 760 SITE 2 AC1 14 ILE A 777 ILE A 825 GLU A 826 VAL A 827 SITE 3 AC1 14 VAL A 828 ASP A 832 THR A 833 MET A 900 SITE 4 AC1 14 ILE A 910 HOH A2040 CRYST1 142.420 64.660 116.900 90.00 103.39 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007021 0.000000 0.001671 0.00000 SCALE2 0.000000 0.015466 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008793 0.00000 MASTER 493 0 1 37 44 0 4 6 0 0 0 73 END