HEADER OXIDOREDUCTASE 14-DEC-09 2X0J TITLE 2.8 A RESOLUTION STRUCTURE OF MALATE DEHYDROGENASE FROM TITLE 2 ARCHAEOGLOBUS FULGIDUS IN COMPLEX WITH ETHENO-NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: MALATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.37; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS DSM 4304; SOURCE 3 ORGANISM_TAXID: 224325; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ONE SHOT; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PSJS1240 KEYWDS OXIDOREDUCTASE, HYPERTHERMOPHILIC, TRICARBOXYLIC ACID CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR A.IRIMIA,D.MADERN,G.ZACCAI,F.M.VELLIEUX,A.KARSHIKOFF, AUTHOR 2 G.TIBBELIN,R.LADENSTEIN,T.LIEN,N.K.BIRKELAND REVDAT 2 15-APR-15 2X0J 1 JRNL REMARK VERSN REVDAT 1 22-DEC-09 2X0J 0 SPRSDE 22-DEC-09 2X0J 1OJU JRNL AUTH A.IRIMIA,F.M.D.VELLIEUX,D.MADERN,G.ZACCAI,A.KARSHIKOFF, JRNL AUTH 2 G.TIBBELIN,R.LADENSTEIN,T.LIEN,N.K.BIRKELAND JRNL TITL THE 2.9A RESOLUTION CRYSTAL STRUCTURE OF MALATE JRNL TITL 2 DEHYDROGENASE FROM ARCHAEOGLOBUS FULGIDUS: MECHANISMS OF JRNL TITL 3 OLIGOMERISATION AND THERMAL STABILISATION. JRNL REF J.MOL.BIOL. V. 335 343 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 14659762 JRNL DOI 10.1016/J.JMB.2003.10.054 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.MADERN,C.EBEL,H.A.DALE,T.LIEN,I.H.STEEN, REMARK 1 AUTH 2 N.-K.BIRKELAND,G.ZACCAI REMARK 1 TITL DIFFERENCES IN THE OLIGOMERIC STATES OF THE LDH- REMARK 1 TITL 2 LIKE L-MALDH FROM THE HYPERTHERMOPHILIC ARCHAEA REMARK 1 TITL 3 METHANOCOCCUS JANNASCHII AND ARCHAEOGLOBUS REMARK 1 TITL 4 FULGIDUS. REMARK 1 REF BIOCHEMISTRY V. 40 10310 2001 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 11513609 REMARK 1 DOI 10.1021/BI010168C REMARK 1 REFERENCE 2 REMARK 1 AUTH A.S.LANGELANDSVIK,I.H.STEEN,N.K.BIRKELAND,T.LIEN REMARK 1 TITL PROPERTIES AND PRIMARY STRUCTURE OF A THERMOSTABLE REMARK 1 TITL 2 L-MALATE DEHYDROGENASE FROM ARCHAEOGLOBUS FULGIDUS REMARK 1 REF ARCH.MICROBIOL. V. 168 59 1997 REMARK 1 REFN ISSN 0302-8933 REMARK 1 PMID 9211715 REMARK 1 DOI 10.1007/S002030050470 REMARK 2 REMARK 2 RESOLUTION. 2.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.786 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.731 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.21 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.88 REMARK 3 NUMBER OF REFLECTIONS : 10819 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.1670 REMARK 3 R VALUE (WORKING SET) : 0.1640 REMARK 3 FREE R VALUE : 0.2165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.4 REMARK 3 FREE R VALUE TEST SET COUNT : 585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.7335 - 4.4206 0.98 2867 186 0.1473 0.1907 REMARK 3 2 4.4206 - 3.5097 0.97 2727 153 0.1472 0.2223 REMARK 3 3 3.5097 - 3.0663 0.90 2483 144 0.2017 0.2628 REMARK 3 4 3.0663 - 2.7861 0.78 2157 102 0.2381 0.2747 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.334 REMARK 3 B_SOL : 54.512 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.34 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.01 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 67.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.0764 REMARK 3 B22 (A**2) : -12.0764 REMARK 3 B33 (A**2) : 24.1527 REMARK 3 B12 (A**2) : -0.0000 REMARK 3 B13 (A**2) : 0.0000 REMARK 3 B23 (A**2) : -0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2322 REMARK 3 ANGLE : 1.249 3141 REMARK 3 CHIRALITY : 0.092 359 REMARK 3 PLANARITY : 0.006 399 REMARK 3 DIHEDRAL : 25.570 906 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 22:103) REMARK 3 ORIGIN FOR THE GROUP (A): 30.3002 31.6469 12.0930 REMARK 3 T TENSOR REMARK 3 T11: 0.3003 T22: 0.4717 REMARK 3 T33: 0.3005 T12: 0.0010 REMARK 3 T13: -0.0052 T23: -0.0845 REMARK 3 L TENSOR REMARK 3 L11: 1.1918 L22: 1.5229 REMARK 3 L33: 1.8463 L12: -0.8649 REMARK 3 L13: -0.7921 L23: 1.0440 REMARK 3 S TENSOR REMARK 3 S11: -0.2645 S12: -0.4667 S13: 0.2741 REMARK 3 S21: 0.1056 S22: 0.1793 S23: -0.2617 REMARK 3 S31: 0.2465 S32: -0.1990 S33: -0.0006 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 105:172) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1548 40.7160 12.6724 REMARK 3 T TENSOR REMARK 3 T11: 0.3271 T22: 0.5456 REMARK 3 T33: 0.3463 T12: -0.0300 REMARK 3 T13: -0.0148 T23: -0.1160 REMARK 3 L TENSOR REMARK 3 L11: 1.1625 L22: 1.1487 REMARK 3 L33: 0.5908 L12: -0.5037 REMARK 3 L13: -1.0333 L23: 0.5358 REMARK 3 S TENSOR REMARK 3 S11: -0.0736 S12: -0.2668 S13: 0.2568 REMARK 3 S21: 0.0407 S22: 0.0650 S23: 0.2383 REMARK 3 S31: 0.1112 S32: 0.0020 S33: 0.0208 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 173:219) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8592 52.2108 -8.9829 REMARK 3 T TENSOR REMARK 3 T11: 0.6020 T22: 0.3861 REMARK 3 T33: 0.5645 T12: 0.0638 REMARK 3 T13: 0.0545 T23: 0.0369 REMARK 3 L TENSOR REMARK 3 L11: 1.1917 L22: 0.5484 REMARK 3 L33: 1.2888 L12: -0.4268 REMARK 3 L13: 0.5312 L23: 0.1161 REMARK 3 S TENSOR REMARK 3 S11: 0.1052 S12: -0.0063 S13: 0.3769 REMARK 3 S21: -0.6090 S22: -0.2857 S23: 0.4990 REMARK 3 S31: -0.4167 S32: 0.1118 S33: 0.2680 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 220:244) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7829 41.6347 -11.4245 REMARK 3 T TENSOR REMARK 3 T11: 0.2672 T22: 0.4717 REMARK 3 T33: 0.4506 T12: 0.0299 REMARK 3 T13: -0.1825 T23: -0.0625 REMARK 3 L TENSOR REMARK 3 L11: 0.4541 L22: 6.7769 REMARK 3 L33: 2.2405 L12: -0.8602 REMARK 3 L13: 0.5121 L23: -1.3523 REMARK 3 S TENSOR REMARK 3 S11: 0.1228 S12: 0.0398 S13: -0.0916 REMARK 3 S21: -0.1205 S22: -0.1716 S23: 1.3556 REMARK 3 S31: -0.0697 S32: -0.4783 S33: -0.1009 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 245:297) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4557 49.5688 7.4221 REMARK 3 T TENSOR REMARK 3 T11: 0.2025 T22: 0.3255 REMARK 3 T33: 0.3931 T12: -0.0242 REMARK 3 T13: -0.0060 T23: -0.2096 REMARK 3 L TENSOR REMARK 3 L11: 0.8912 L22: 1.2348 REMARK 3 L33: 0.6870 L12: -0.3207 REMARK 3 L13: 0.1919 L23: -1.0456 REMARK 3 S TENSOR REMARK 3 S11: -0.0024 S12: -0.1739 S13: 0.5566 REMARK 3 S21: -0.1008 S22: 0.0815 S23: -0.0588 REMARK 3 S31: 0.0503 S32: 0.1163 S33: -0.0128 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 298:331) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9215 53.3982 5.2979 REMARK 3 T TENSOR REMARK 3 T11: 0.4046 T22: 0.4635 REMARK 3 T33: 0.8273 T12: 0.0585 REMARK 3 T13: 0.0191 T23: -0.2007 REMARK 3 L TENSOR REMARK 3 L11: 1.1186 L22: 1.1232 REMARK 3 L33: 1.7965 L12: -1.1296 REMARK 3 L13: 0.1330 L23: -0.0178 REMARK 3 S TENSOR REMARK 3 S11: -0.1633 S12: -0.2236 S13: 0.3578 REMARK 3 S21: -0.0006 S22: -0.0228 S23: 0.4385 REMARK 3 S31: -0.3277 S32: -0.5373 S33: 0.0294 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2X0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-09. REMARK 100 THE PDBE ID CODE IS EBI-42063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND CRYSTALS REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : BIOMOL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10861 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.79 REMARK 200 RESOLUTION RANGE LOW (A) : 35.80 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.5 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.9 REMARK 200 DATA REDUNDANCY : 15.5 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 43.50 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.3 REMARK 200 R MERGE FOR SHELL (I) : 0.15 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.70 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: OTHER REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.22 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: INITIAL PROTEIN DROPLET: 22 REMARK 280 MG/ML PROTEIN, 10 MM ETHENO-NAD RESERVOIR: 1.6 % (W/V) REMARK 280 POLYETHYLENE GLYCOL 8000, 0.8 M LISO4 DROPLET: EQUAL REMARK 280 VOLUMES OF INITIAL PROTEIN DROPLET AND RESERVOIR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.30000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 56.49500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 56.49500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.65000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 56.49500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 56.49500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 52.95000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 56.49500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.49500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 17.65000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 56.49500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.49500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.95000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 35.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -63.13 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 105 C - N - CA ANGL. DEV. = 11.4 DEGREES REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 101 -156.83 -107.33 REMARK 500 ARG A 102 -162.68 -107.17 REMARK 500 PRO A 105 4.39 13.24 REMARK 500 MET A 107 -62.39 -127.80 REMARK 500 THR A 108 139.97 108.94 REMARK 500 ASN A 130 -44.20 -140.31 REMARK 500 ARG A 188 107.57 59.09 REMARK 500 HIS A 195 79.70 -68.71 REMARK 500 VAL A 220 -132.61 -117.65 REMARK 500 ASP A 224 72.78 -173.30 REMARK 500 GLU A 226 -75.83 -55.02 REMARK 500 ILE A 247 -63.53 -123.92 REMARK 500 ALA A 260 -37.72 -39.14 REMARK 500 ASP A 264 48.79 37.90 REMARK 500 GLN A 276 50.66 -142.21 REMARK 500 TYR A 279 13.10 57.15 REMARK 500 ASP A 304 70.08 45.73 REMARK 500 SER A 308 158.46 -42.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ENA A1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A2000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2X0I RELATED DB: PDB REMARK 900 2.9 A RESOLUTION STRUCTURE OF MALATE REMARK 900 DEHYDROGENASE FROM ARCHAEOGLOBUS FULGIDUS IN REMARK 900 COMPLEX WITH NADH DBREF 2X0J A 22 331 UNP O08349 MDH_ARCFU 1 294 SEQRES 1 A 294 MET LYS LEU GLY PHE VAL GLY ALA GLY ARG VAL GLY SER SEQRES 2 A 294 THR SER ALA PHE THR CYS LEU LEU ASN LEU ASP VAL ASP SEQRES 3 A 294 GLU ILE ALA LEU VAL ASP ILE ALA GLU ASP LEU ALA VAL SEQRES 4 A 294 GLY GLU ALA MET ASP LEU ALA HIS ALA ALA ALA GLY ILE SEQRES 5 A 294 ASP LYS TYR PRO LYS ILE VAL GLY GLY ALA ASP TYR SER SEQRES 6 A 294 LEU LEU LYS GLY SER GLU ILE ILE VAL VAL THR ALA GLY SEQRES 7 A 294 LEU ALA ARG LYS PRO GLY MET THR ARG LEU ASP LEU ALA SEQRES 8 A 294 HIS LYS ASN ALA GLY ILE ILE LYS ASP ILE ALA LYS LYS SEQRES 9 A 294 ILE VAL GLU ASN ALA PRO GLU SER LYS ILE LEU VAL VAL SEQRES 10 A 294 THR ASN PRO MET ASP VAL MET THR TYR ILE MET TRP LYS SEQRES 11 A 294 GLU SER GLY LYS PRO ARG ASN GLU VAL PHE GLY MET GLY SEQRES 12 A 294 ASN GLN LEU ASP SER GLN ARG LEU LYS GLU ARG LEU TYR SEQRES 13 A 294 ASN ALA GLY ALA ARG ASN ILE ARG ARG ALA TRP ILE ILE SEQRES 14 A 294 GLY GLU HIS GLY ASP SER MET PHE VAL ALA LYS SER LEU SEQRES 15 A 294 ALA ASP PHE ASP GLY GLU VAL ASP TRP GLU ALA VAL GLU SEQRES 16 A 294 ASN ASP VAL ARG PHE VAL ALA ALA GLU VAL ILE LYS ARG SEQRES 17 A 294 LYS GLY ALA THR ILE PHE GLY PRO ALA VAL ALA ILE TYR SEQRES 18 A 294 ARG MET VAL LYS ALA VAL VAL GLU ASP THR GLY GLU ILE SEQRES 19 A 294 ILE PRO THR SER MET ILE LEU GLN GLY GLU TYR GLY ILE SEQRES 20 A 294 GLU ASN VAL ALA VAL GLY VAL PRO ALA LYS LEU GLY LYS SEQRES 21 A 294 ASN GLY ALA GLU VAL ALA ASP ILE LYS LEU SER ASP GLU SEQRES 22 A 294 GLU ILE GLU LYS LEU ARG ASN SER ALA LYS ILE LEU ARG SEQRES 23 A 294 GLU ARG LEU GLU GLU LEU GLY TYR HET ENA A1000 46 HET SO4 A2000 5 HETNAM ENA ETHENO-NAD HETNAM SO4 SULFATE ION FORMUL 2 ENA C23 H27 N7 O14 P2 FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *30(H2 O) HELIX 1 1 GLY A 30 LEU A 44 1 15 HELIX 2 2 ALA A 55 ALA A 71A 1 17 HELIX 3 3 GLY A 71B ASP A 73 5 3 HELIX 4 4 ASP A 84B LYS A 89 5 6 HELIX 5 5 THR A 108 GLU A 129 1 22 HELIX 6 6 PRO A 141 SER A 153 1 13 HELIX 7 7 GLY A 164 ALA A 179 1 16 HELIX 8 8 LYS A 203 ALA A 206 5 4 HELIX 9 9 ASP A 224 PHE A 234 1 11 HELIX 10 10 PHE A 234 GLY A 244 1 11 HELIX 11 11 ILE A 247 GLU A 263 1 17 HELIX 12 12 GLU A 278 GLY A 280 5 3 HELIX 13 13 SER A 308 GLU A 328 1 21 SHEET 1 AA 6 LYS A 77 GLY A 81 0 SHEET 2 AA 6 GLU A 48 VAL A 52 1 O ILE A 49 N VAL A 79 SHEET 3 AA 6 LYS A 23 VAL A 27 1 O LEU A 24 N ALA A 50 SHEET 4 AA 6 ILE A 93 VAL A 96 1 O ILE A 93 N GLY A 25 SHEET 5 AA 6 LYS A 134 VAL A 137 1 O LYS A 134 N ILE A 94 SHEET 6 AA 6 VAL A 160 GLY A 162 1 O PHE A 161 N VAL A 137 SHEET 1 AB 2 ARG A 183 ILE A 187A 0 SHEET 2 AB 2 PHE A 208 ASP A 209 -1 O ASP A 209 N ARG A 183 SHEET 1 AC 2 ILE A 191 ILE A 192 0 SHEET 2 AC 2 PHE A 200 VAL A 201 -1 O PHE A 200 N ILE A 192 SHEET 1 AD 3 ILE A 268 GLN A 276 0 SHEET 2 AD 3 GLU A 283 GLY A 294 -1 N ASN A 284 O LEU A 275 SHEET 3 AD 3 GLY A 297 VAL A 302 -1 O GLY A 297 N GLY A 294 CISPEP 1 ASN A 140 PRO A 141 0 0.86 SITE 1 AC1 22 GLY A 30 ARG A 31 VAL A 32 ASP A 53 SITE 2 AC1 22 ILE A 54 LEU A 58 TYR A 85 THR A 97 SITE 3 AC1 22 ALA A 98 GLY A 99 ILE A 119 VAL A 138 SITE 4 AC1 22 ASN A 140 MET A 142 MET A 163 LEU A 167 SITE 5 AC1 22 HIS A 195 THR A 246 PRO A 250 SO4 A2000 SITE 6 AC1 22 HOH A2029 HOH A2030 SITE 1 AC2 7 ASN A 140 LEU A 167 ARG A 171 HIS A 195 SITE 2 AC2 7 ALA A 236 THR A 246 ENA A1000 CRYST1 112.990 112.990 70.600 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008850 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008850 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014164 0.00000 MASTER 394 0 2 13 13 0 8 6 0 0 0 23 END