HEADER HYDROLASE 15-OCT-09 2WV9 TITLE CRYSTAL STRUCTURE OF THE NS3 PROTEASE-HELICASE FROM MURRAY TITLE 2 VALLEY ENCEPHALITIS VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVIVIRIN PROTEASE NS2B REGULATORY SUBUNIT, FLAVIVIRIN COMPND 3 PROTEASE NS3 CATALYTIC SUBUNIT; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: NS2B, RESIDUES 1421-1465; COMPND 6 EC: 3.4.21.91; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: PARTIAL POLYPROTEIN FRAGMENT OF NS2B FRAGMENT COMPND 9 SEPARATED FROM NS3 BY A SEQUENCE ENCODING A NINE AMINO ACID LINKER COMPND 10 (GGGGSGGGG). SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MURRAY VALLEY ENCEPHALITIS VIRUS; SOURCE 3 ORGANISM_TAXID: 301478; SOURCE 4 STRAIN: MVE-1-51; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA(DE3)PLYS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: OPPF4631 KEYWDS NUCLEOTIDE-BINDING, CAPSID PROTEIN, RNA REPLICATION, ENVELOPE KEYWDS 2 PROTEIN, VIRION, HELICASE, HYDROLASE, FLAVIVIRUS, KEYWDS 3 NUCLEOTIDYLTRANSFERASE, EXPDTA X-RAY DIFFRACTION AUTHOR R.ASSENBERG,E.MASTRANGELO,T.S.WALTER,A.VERMA,M.MILANI,R.J.OWENS, AUTHOR 2 D.I.STUART,J.M.GRIMES,E.J.MANCINI REVDAT 3 13-JUL-11 2WV9 1 VERSN REVDAT 2 02-FEB-10 2WV9 1 KEYWDS REMARK REVDAT 1 01-DEC-09 2WV9 0 JRNL AUTH R.ASSENBERG,E.MASTRANGELO,T.S.WALTER,A.VERMA,M.MILANI, JRNL AUTH 2 R.J.OWENS,D.I.STUART,J.M.GRIMES,E.J.MANCINI JRNL TITL CRYSTAL STRUCTURE OF A NOVEL CONFORMATIONAL STATE OF THE JRNL TITL 2 FLAVIVIRUS NS3 PROTEIN: IMPLICATIONS FOR POLYPROTEIN JRNL TITL 3 PROCESSING AND VIRAL REPLICATION. JRNL REF J.VIROL. V. 83 12895 2009 JRNL REFN ISSN 0022-538X JRNL PMID 19793813 JRNL DOI 10.1128/JVI.00942-09 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 16866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.268 REMARK 3 R VALUE (WORKING SET) : 0.267 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 FREE R VALUE TEST SET COUNT : 884 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1226 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 66 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4677 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 6.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : 2.68000 REMARK 3 B33 (A**2) : -2.46000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.448 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.353 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 37.435 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.858 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.844 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4785 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6496 ; 0.899 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 596 ; 4.431 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 215 ;30.945 ;23.349 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 783 ;13.854 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;13.516 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 708 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3659 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1975 ; 0.169 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3158 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 153 ; 0.112 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 56 ; 0.173 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.084 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2977 ; 0.145 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4792 ; 0.267 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1808 ; 0.246 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1704 ; 0.434 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 18 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 27.4570 18.7450 -3.2840 REMARK 3 T TENSOR REMARK 3 T11: 0.2974 T22: 0.3084 REMARK 3 T33: 0.3836 T12: 0.0630 REMARK 3 T13: 0.0130 T23: -0.0479 REMARK 3 L TENSOR REMARK 3 L11: 6.2672 L22: 1.9974 REMARK 3 L33: 9.5093 L12: -1.8811 REMARK 3 L13: 0.9212 L23: 2.3319 REMARK 3 S TENSOR REMARK 3 S11: -0.0137 S12: 0.0395 S13: -0.5225 REMARK 3 S21: 0.2787 S22: 0.1116 S23: 0.1606 REMARK 3 S31: 0.7028 S32: -0.1374 S33: -0.0980 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 178 A 618 REMARK 3 ORIGIN FOR THE GROUP (A): -1.0800 1.8400 36.0510 REMARK 3 T TENSOR REMARK 3 T11: 0.5660 T22: 0.5197 REMARK 3 T33: 0.4979 T12: 0.0454 REMARK 3 T13: -0.0094 T23: -0.0603 REMARK 3 L TENSOR REMARK 3 L11: 1.1220 L22: 1.1232 REMARK 3 L33: 1.6620 L12: -0.3592 REMARK 3 L13: -0.3278 L23: -0.7861 REMARK 3 S TENSOR REMARK 3 S11: -0.0270 S12: -0.2287 S13: -0.2115 REMARK 3 S21: -0.1027 S22: -0.0566 S23: 0.1819 REMARK 3 S31: 0.3450 S32: 0.0528 S33: 0.0837 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -52 A -33 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3470 28.8930 -8.0850 REMARK 3 T TENSOR REMARK 3 T11: 0.7643 T22: 0.3206 REMARK 3 T33: 0.9305 T12: -0.0214 REMARK 3 T13: -0.5065 T23: 0.2131 REMARK 3 L TENSOR REMARK 3 L11: 38.0168 L22: 4.5175 REMARK 3 L33: 22.9086 L12: 0.4849 REMARK 3 L13: 2.2513 L23: 6.4686 REMARK 3 S TENSOR REMARK 3 S11: -2.0526 S12: 2.8620 S13: 4.9487 REMARK 3 S21: -0.1339 S22: 0.4021 S23: -0.1866 REMARK 3 S31: -2.9047 S32: -0.2462 S33: 1.6505 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2WV9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-NOV-09. REMARK 100 THE PDBE ID CODE IS EBI-41404. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-07 REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12710 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : HKL2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17750 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 43.937 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.700 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.73000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 2V8O, 2IJO REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.0, 20% POLYETHYLENE REMARK 280 GLYCOL 6000, 200 MM MAGNESIUM CHLORIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 52.73000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -32 REMARK 465 THR A -31 REMARK 465 SER A -30 REMARK 465 GLU A -29 REMARK 465 ARG A -28 REMARK 465 LEU A -27 REMARK 465 ASP A -26 REMARK 465 VAL A -25 REMARK 465 GLN A -24 REMARK 465 LEU A -23 REMARK 465 ASP A -22 REMARK 465 ASP A -21 REMARK 465 ASP A -20 REMARK 465 GLY A -19 REMARK 465 ASP A -18 REMARK 465 PHE A -17 REMARK 465 HIS A -16 REMARK 465 LEU A -15 REMARK 465 LEU A -14 REMARK 465 ASN A -13 REMARK 465 ASP A -12 REMARK 465 PRO A -11 REMARK 465 GLY A -10 REMARK 465 VAL A -9 REMARK 465 GLY A -8 REMARK 465 GLY A -7 REMARK 465 GLY A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 GLY A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 GLY A 1 REMARK 465 GLY A 2 REMARK 465 VAL A 3 REMARK 465 PHE A 4 REMARK 465 TRP A 5 REMARK 465 ASP A 6 REMARK 465 THR A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 PRO A 10 REMARK 465 LYS A 11 REMARK 465 VAL A 12 REMARK 465 TYR A 13 REMARK 465 PRO A 14 REMARK 465 LYS A 15 REMARK 465 GLY A 16 REMARK 465 ASP A 17 REMARK 465 GLU A 169 REMARK 465 ARG A 170 REMARK 465 VAL A 171 REMARK 465 GLU A 172 REMARK 465 GLU A 173 REMARK 465 PRO A 174 REMARK 465 VAL A 175 REMARK 465 ALA A 247 REMARK 465 VAL A 248 REMARK 465 GLN A 249 REMARK 465 ILE A 582 REMARK 465 ILE A 583 REMARK 465 THR A 584 REMARK 465 ARG A 585 REMARK 465 ILE A 586 REMARK 465 GLY A 587 REMARK 465 GLU A 588 REMARK 465 ARG A 589 REMARK 465 LYS A 590 REMARK 465 VAL A 591 REMARK 465 LEU A 592 REMARK 465 ARG A 619 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A -33 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 186 O ALA A 310 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 158 -47.16 27.29 REMARK 500 LYS A 200 -71.13 -56.43 REMARK 500 LYS A 539 -60.79 -90.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN A 158 24.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V8O RELATED DB: PDB REMARK 900 STRUCTURE OF THE MURRAY VALLEY ENCEPHALITIS REMARK 900 VIRUS RNA HELICASE TO 1.9A RESOLUTION REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES 49-93 OF PROTEIN NS2B WERE LINKED TO REMARK 999 RESIDUES 1-618 OF NS3 VIA A SYNTHETIC LINKER (GGGGSGGGG) REMARK 999 ADDED AT THE C-TERMINUS OF NS2B DBREF 2WV9 A -53 -9 UNP P05769 POLG_MVEV5 1421 1465 DBREF 2WV9 A -8 0 PDB 2WV9 2WV9 -8 0 DBREF 2WV9 A 1 619 UNP P05769 POLG_MVEV5 1504 2122 SEQRES 1 A 673 ALA THR ASP MET TRP LEU GLU ARG ALA ALA ASP VAL SER SEQRES 2 A 673 TRP GLU ALA GLY ALA ALA ILE THR GLY THR SER GLU ARG SEQRES 3 A 673 LEU ASP VAL GLN LEU ASP ASP ASP GLY ASP PHE HIS LEU SEQRES 4 A 673 LEU ASN ASP PRO GLY VAL GLY GLY GLY GLY SER GLY GLY SEQRES 5 A 673 GLY GLY GLY GLY VAL PHE TRP ASP THR PRO SER PRO LYS SEQRES 6 A 673 VAL TYR PRO LYS GLY ASP THR THR PRO GLY VAL TYR ARG SEQRES 7 A 673 ILE MET ALA ARG GLY ILE LEU GLY ARG TYR GLN ALA GLY SEQRES 8 A 673 VAL GLY VAL MET HIS GLU GLY VAL PHE HIS THR LEU TRP SEQRES 9 A 673 HIS THR THR ARG GLY ALA ALA ILE MET SER GLY GLU GLY SEQRES 10 A 673 ARG LEU THR PRO TYR TRP GLY ASN VAL LYS GLU ASP ARG SEQRES 11 A 673 VAL THR TYR GLY GLY PRO TRP LYS LEU ASP GLN LYS TRP SEQRES 12 A 673 ASN GLY VAL ASP ASP VAL GLN MET ILE VAL VAL GLU PRO SEQRES 13 A 673 GLY LYS PRO ALA ILE ASN VAL GLN THR LYS PRO GLY ILE SEQRES 14 A 673 PHE LYS THR ALA HIS GLY GLU ILE GLY ALA VAL SER LEU SEQRES 15 A 673 ASP TYR PRO ILE GLY THR SER GLY SER PRO ILE VAL ASN SEQRES 16 A 673 SER ASN GLY GLU ILE ILE GLY LEU TYR GLY ASN GLY VAL SEQRES 17 A 673 ILE LEU GLY ASN GLY ALA TYR VAL SER ALA ILE VAL GLN SEQRES 18 A 673 GLY GLU ARG VAL GLU GLU PRO VAL PRO GLU ALA TYR ASN SEQRES 19 A 673 PRO GLU MET LEU LYS LYS ARG GLN LEU THR VAL LEU ASP SEQRES 20 A 673 LEU HIS PRO GLY ALA GLY LYS THR ARG ARG ILE LEU PRO SEQRES 21 A 673 GLN ILE ILE LYS ASP ALA ILE GLN LYS ARG LEU ARG THR SEQRES 22 A 673 ALA VAL LEU ALA PRO THR ARG VAL VAL ALA ALA GLU MET SEQRES 23 A 673 ALA GLU ALA LEU ARG GLY LEU PRO VAL ARG TYR LEU THR SEQRES 24 A 673 PRO ALA VAL GLN ARG GLU HIS SER GLY ASN GLU ILE VAL SEQRES 25 A 673 ASP VAL MET CYS HIS ALA THR LEU THR HIS ARG LEU MET SEQRES 26 A 673 SER PRO LEU ARG VAL PRO ASN TYR ASN LEU PHE VAL MET SEQRES 27 A 673 ASP GLU ALA HIS PHE THR ASP PRO ALA SER ILE ALA ALA SEQRES 28 A 673 ARG GLY TYR ILE ALA THR ARG VAL GLU ALA GLY GLU ALA SEQRES 29 A 673 ALA ALA ILE PHE MET THR ALA THR PRO PRO GLY THR SER SEQRES 30 A 673 ASP PRO PHE PRO ASP THR ASN SER PRO VAL HIS ASP VAL SEQRES 31 A 673 SER SER GLU ILE PRO ASP ARG ALA TRP SER SER GLY PHE SEQRES 32 A 673 GLU TRP ILE THR ASP TYR ALA GLY LYS THR VAL TRP PHE SEQRES 33 A 673 VAL ALA SER VAL LYS MET SER ASN GLU ILE ALA GLN CYS SEQRES 34 A 673 LEU GLN ARG ALA GLY LYS ARG VAL ILE GLN LEU ASN ARG SEQRES 35 A 673 LYS SER TYR ASP THR GLU TYR PRO LYS CYS LYS ASN GLY SEQRES 36 A 673 ASP TRP ASP PHE VAL ILE THR THR ASP ILE SER GLU MET SEQRES 37 A 673 GLY ALA ASN PHE GLY ALA SER ARG VAL ILE ASP CYS ARG SEQRES 38 A 673 LYS SER VAL LYS PRO THR ILE LEU ASP GLU GLY GLU GLY SEQRES 39 A 673 ARG VAL ILE LEU SER VAL PRO SER ALA ILE THR SER ALA SEQRES 40 A 673 SER ALA ALA GLN ARG ARG GLY ARG VAL GLY ARG ASN PRO SEQRES 41 A 673 SER GLN ILE GLY ASP GLU TYR HIS TYR GLY GLY GLY THR SEQRES 42 A 673 SER GLU ASP ASP THR MET LEU ALA HIS TRP THR GLU ALA SEQRES 43 A 673 LYS ILE LEU LEU ASP ASN ILE HIS LEU PRO ASN GLY LEU SEQRES 44 A 673 VAL ALA GLN LEU TYR GLY PRO GLU ARG ASP LYS THR TYR SEQRES 45 A 673 THR MET ASP GLY GLU TYR ARG LEU ARG GLY GLU GLU ARG SEQRES 46 A 673 LYS THR PHE LEU GLU LEU ILE LYS THR ALA ASP LEU PRO SEQRES 47 A 673 VAL TRP LEU ALA TYR LYS VAL ALA SER ASN GLY ILE GLN SEQRES 48 A 673 TYR ASN ASP ARG LYS TRP CYS PHE ASP GLY PRO ARG SER SEQRES 49 A 673 ASN ILE ILE LEU GLU ASP ASN ASN GLU VAL GLU ILE ILE SEQRES 50 A 673 THR ARG ILE GLY GLU ARG LYS VAL LEU LYS PRO ARG TRP SEQRES 51 A 673 LEU ASP ALA ARG VAL TYR SER ASP HIS GLN SER LEU LYS SEQRES 52 A 673 TRP PHE LYS ASP PHE ALA ALA GLY LYS ARG FORMUL 2 HOH *89(H2 O) HELIX 1 1 LEU A 49 ARG A 54 1 6 HELIX 2 2 PRO A 131 SER A 135 5 5 HELIX 3 3 ASN A 180 LYS A 185 5 6 HELIX 4 4 ARG A 203 LYS A 215 1 13 HELIX 5 5 THR A 225 LEU A 236 1 12 HELIX 6 6 HIS A 263 SER A 272 1 10 HELIX 7 7 ASP A 291 ALA A 307 1 17 HELIX 8 8 PHE A 349 ASP A 354 1 6 HELIX 9 9 SER A 365 ARG A 378 1 14 HELIX 10 10 SER A 390 TYR A 395 1 6 HELIX 11 11 PRO A 396 ASN A 400 5 5 HELIX 12 12 ASP A 410 MET A 414 5 5 HELIX 13 13 THR A 451 GLY A 460 1 10 HELIX 14 14 ALA A 487 ASN A 498 1 12 HELIX 15 15 TYR A 510 THR A 517 5 8 HELIX 16 16 ARG A 527 THR A 540 1 14 HELIX 17 17 PRO A 544 GLY A 555 1 12 HELIX 18 18 ARG A 561 PHE A 565 5 5 HELIX 19 19 ARG A 600 TYR A 602 5 3 HELIX 20 20 ASP A 604 GLY A 617 1 14 SHEET 1 AA 8 ARG A 64 LEU A 65 0 SHEET 2 AA 8 ILE A 58 MET A 59 -1 O ILE A 58 N LEU A 65 SHEET 3 AA 8 MET A -50 ALA A -44 1 O MET A -50 N MET A 59 SHEET 4 AA 8 GLY A 21 ARG A 28 -1 O VAL A 22 N ALA A -45 SHEET 5 AA 8 ARG A 33 HIS A 42 -1 O TYR A 34 N ALA A 27 SHEET 6 AA 8 VAL A 45 THR A 48 -1 O VAL A 45 N HIS A 42 SHEET 7 AA 8 ARG A 76 TYR A 79 -1 O VAL A 77 N THR A 48 SHEET 8 AA 8 PRO A 67 ASN A 71 -1 N TYR A 68 O THR A 78 SHEET 1 AB 8 ALA A -35 ILE A -34 0 SHEET 2 AB 8 ILE A 107 THR A 111 -1 O ASN A 108 N ILE A -34 SHEET 3 AB 8 VAL A 95 VAL A 99 -1 O VAL A 95 N THR A 111 SHEET 4 AB 8 PRO A 138 VAL A 140 -1 O PRO A 138 N ILE A 98 SHEET 5 AB 8 ILE A 146 ILE A 155 -1 N ILE A 147 O ILE A 139 SHEET 6 AB 8 TYR A 161 VAL A 166 -1 O VAL A 162 N VAL A 154 SHEET 7 AB 8 ILE A 123 VAL A 126 -1 O GLY A 124 N ILE A 165 SHEET 8 AB 8 GLY A 114 PHE A 116 -1 O GLY A 114 N ALA A 125 SHEET 1 AC 6 LEU A 189 LEU A 192 0 SHEET 2 AC 6 ALA A 311 MET A 315 1 O ALA A 312 N THR A 190 SHEET 3 AC 6 LEU A 281 ASP A 285 1 O PHE A 282 N ILE A 313 SHEET 4 AC 6 THR A 219 ALA A 223 1 O ALA A 220 N VAL A 283 SHEET 5 AC 6 VAL A 258 CYS A 262 1 O ASP A 259 N VAL A 221 SHEET 6 AC 6 ARG A 242 TYR A 243 1 O ARG A 242 N VAL A 260 SHEET 1 AD 6 VAL A 333 SER A 337 0 SHEET 2 AD 6 ASP A 471 TYR A 475 1 O ASP A 471 N HIS A 334 SHEET 3 AD 6 ARG A 422 ASP A 425 1 O VAL A 423 N HIS A 474 SHEET 4 AD 6 THR A 359 PHE A 362 1 O VAL A 360 N ILE A 424 SHEET 5 AD 6 PHE A 405 THR A 408 1 O VAL A 406 N TRP A 361 SHEET 6 AD 6 VAL A 383 LEU A 386 1 O ILE A 384 N ILE A 407 SHEET 1 AE 2 LYS A 428 SER A 429 0 SHEET 2 AE 2 SER A 448 ALA A 449 -1 O SER A 448 N SER A 429 SHEET 1 AF 3 PRO A 432 LEU A 435 0 SHEET 2 AF 3 ARG A 441 LEU A 444 -1 O ARG A 441 N LEU A 435 SHEET 3 AF 3 LEU A 597 ASP A 598 1 O LEU A 597 N VAL A 442 CRYST1 41.910 105.460 80.068 90.00 97.42 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023861 0.000000 0.003107 0.00000 SCALE2 0.000000 0.009482 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012595 0.00000 MASTER 421 0 0 20 33 0 0 6 0 0 0 52 END