HEADER TRANSFERASE, CELL ADHESION 16-JUN-09 2WKR TITLE STRUCTURE OF A PHOTOACTIVATABLE RAC1 CONTAINING THE LOV2 C450M MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: NPH1-1, RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NPH1-1, RESIDUES 404-546 AND P21-RAC1, RESIDUES 4-180; COMPND 5 SYNONYM: P21-RAC1, RAS-LIKE PROTEIN TC25, CELL MIGRATION-INDUCING COMPND 6 GENE 5 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AVENA SATIVA, HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: OAT, HUMAN; SOURCE 4 ORGANISM_TAXID: 4498, 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL10 GOLD; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS TRANSFERASE, CELL ADHESION, NUCLEOTIDE-BINDING, PROTEIN ENGINEERING, KEYWDS 2 RAS SUPERFAMILY LOV2, PHOTOTROPIN1, PROTEIN DESIGN, SMALL G-PROTEIN, KEYWDS 3 LIGHT-INDUCED SIGNAL TRANSDUCTION, GTPASE, RHO FAMILY, ATP-BINDING, KEYWDS 4 PRENYLATION, CHIMERA, NUCLEOTIDE-BINDING PROTEIN ENGINEERING, ADP- KEYWDS 5 RIBOSYLATION EXPDTA X-RAY DIFFRACTION AUTHOR Y.I.WU,D.FREY,O.I.LUNGU,A.JAEHRIG,I.SCHLICHTING,B.KUHLMAN,K.M.HAHN REVDAT 4 15-MAR-17 2WKR 1 SOURCE REVDAT 3 03-NOV-09 2WKR 1 JRNL REVDAT 2 01-SEP-09 2WKR 1 KEYWDS JRNL DBREF REVDAT 1 18-AUG-09 2WKR 0 JRNL AUTH Y.I.WU,D.FREY,O.I.LUNGU,A.JAEHRIG,I.SCHLICHTING,B.KUHLMAN, JRNL AUTH 2 K.M.HAHN JRNL TITL A GENETICALLY ENCODED PHOTOACTIVATABLE RAC CONTROLS THE JRNL TITL 2 MOTILITY OF LIVING CELLS. JRNL REF NATURE V. 461 104 2009 JRNL REFN ISSN 0028-0836 JRNL PMID 19693014 JRNL DOI 10.1038/NATURE08241 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 25764 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1281 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.6049 - 4.5725 0.98 2804 147 0.1741 0.2070 REMARK 3 2 4.5725 - 3.6308 0.99 2726 144 0.1546 0.1783 REMARK 3 3 3.6308 - 3.1723 1.00 2751 145 0.1696 0.1980 REMARK 3 4 3.1723 - 2.8825 1.00 2705 141 0.1864 0.2179 REMARK 3 5 2.8825 - 2.6760 1.00 2722 145 0.1897 0.2416 REMARK 3 6 2.6760 - 2.5183 1.00 2712 141 0.1923 0.2503 REMARK 3 7 2.5183 - 2.3922 1.00 2678 140 0.2067 0.2898 REMARK 3 8 2.3922 - 2.2881 1.00 2709 141 0.2065 0.2653 REMARK 3 9 2.2881 - 2.2000 1.00 2676 137 0.2252 0.3036 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 38.66 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.620 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.97920 REMARK 3 B22 (A**2) : 2.97920 REMARK 3 B33 (A**2) : -5.95830 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2642 REMARK 3 ANGLE : 1.032 3596 REMARK 3 CHIRALITY : 0.063 406 REMARK 3 PLANARITY : 0.004 452 REMARK 3 DIHEDRAL : 18.917 979 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2WKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-09. REMARK 100 THE PDBE ID CODE IS EBI-40150. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9797 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25771 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.11000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.50000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 1.3.3 REMARK 200 STARTING MODEL: PDB ENTRIES 1MH1, 2VOU REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18 % (V/V) PEG 600 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.13333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.06667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 23.06667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 46.13333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, CYS 450 TO MET REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLN 61 TO LEU REMARK 400 ENGINEERED RESIDUE IN CHAIN A, GLU 91 TO HIS REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASN 92 TO HIS REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 392 REMARK 465 ARG A 393 REMARK 465 GLY A 394 REMARK 465 SER A 395 REMARK 465 HIS A 396 REMARK 465 HIS A 397 REMARK 465 HIS A 398 REMARK 465 HIS A 399 REMARK 465 HIS A 400 REMARK 465 HIS A 401 REMARK 465 GLY A 402 REMARK 465 SER A 403 REMARK 465 LEU A 404 REMARK 465 PRO A 722 REMARK 465 PRO A 723 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 503 28.26 -76.05 REMARK 500 ASP A 522 -133.12 47.74 REMARK 500 VAL A 579 -81.45 -94.05 REMARK 500 LYS A 639 -64.44 -121.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1724 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 560 OG1 REMARK 620 2 THR A 578 OG1 79.2 REMARK 620 3 HOH A2212 O 87.6 90.4 REMARK 620 4 GTP A1722 O1G 172.3 93.7 89.5 REMARK 620 5 GTP A1722 O1B 91.6 170.8 89.2 95.5 REMARK 620 6 HOH A2128 O 90.8 92.8 176.1 92.5 87.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GTP A 1722 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 1723 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1724 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1725 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1726 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V0U RELATED DB: PDB REMARK 900 N- AND C-TERMINAL HELICES OF OAT LOV2 ( 404-546) ARE INVOLVED IN REMARK 900 LIGHT-INDUCED SIGNAL TRANSDUCTION (CRYO DARK STRUCTURE OF LOV2 (404- REMARK 900 546)) REMARK 900 RELATED ID: 2VRW RELATED DB: PDB REMARK 900 CRITICAL STRUCTURAL ROLE FOR THE PH AND C1 DOMAINS OF THE VAV1 REMARK 900 EXCHANGE FACTOR REMARK 900 RELATED ID: 1E96 RELATED DB: PDB REMARK 900 STRUCTURE OF THE RAC/P67PHOX COMPLEX REMARK 900 RELATED ID: 1I4D RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF RAC1-GDP COMPLEXED WITHARFAPTIN (P21) REMARK 900 RELATED ID: 1FOE RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAC1 IN COMPLEX WITH THE GUANINENUCLEOTIDE REMARK 900 EXCHANGE REGION OF TIAM1 REMARK 900 RELATED ID: 1MH1 RELATED DB: PDB REMARK 900 SMALL G-PROTEIN REMARK 900 RELATED ID: 1I4L RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF RAC1-GDP IN COMPLEX WITHARFAPTIN (P41) REMARK 900 RELATED ID: 1HE1 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE GAP DOMAIN OF THE REMARK 900 PSEUDOMONAS AERUGINOSA EXOS TOXIN AND HUMAN RAC REMARK 900 RELATED ID: 2V0W RELATED DB: PDB REMARK 900 N- AND C-TERMINAL HELICES OF OAT LOV2 ( 404-546) ARE INVOLVED IN REMARK 900 LIGHT-INDUCED SIGNAL TRANSDUCTION (CRYO-TRAPPED LIGHT STRUCTURE OF REMARK 900 LOV2 (404-546)) REMARK 900 RELATED ID: 1RYF RELATED DB: PDB REMARK 900 ALTERNATIVE SPLICING OF RAC1 GENERATES RAC1B , A SELF-ACTIVATING REMARK 900 GTPASE REMARK 900 RELATED ID: 2V1A RELATED DB: PDB REMARK 900 N- AND C-TERMINAL HELICES OF OAT LOV2 ( 404-546) ARE INVOLVED IN REMARK 900 LIGHT-INDUCED SIGNAL TRANSDUCTION (ROOM TEMPERATURE (293K) DARK REMARK 900 STRUCTURE OF LOV2 (404-546)) REMARK 900 RELATED ID: 1RYH RELATED DB: PDB REMARK 900 ALTERNATIVE SPLICING OF RAC1 GENERATES RAC1B , A SELF-ACTIVATING REMARK 900 GTPASE REMARK 900 RELATED ID: 1HH4 RELATED DB: PDB REMARK 900 RAC1-RHOGDI COMPLEX INVOLVED IN NADPH OXIDASE ACTIVATION REMARK 900 RELATED ID: 2WKP RELATED DB: PDB REMARK 900 STRUCTURE OF A PHOTOACTIVATABLE RAC1 CONTAINING LOV2 WILDTYPE REMARK 900 RELATED ID: 2FJU RELATED DB: PDB REMARK 900 ACTIVATED RAC1 BOUND TO ITS EFFECTOR PHOSPHOLIPASE C BETA 2 REMARK 900 RELATED ID: 1G4U RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE SALMONELLA TYROSINE PHOSPHATASEAND GTPASE REMARK 900 ACTIVATING PROTEIN SPTP BOUND TO RAC1 REMARK 900 RELATED ID: 1I4T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF RAC1-GMPPNP IN COMPLEX WITHARFAPTIN REMARK 900 RELATED ID: 2V1B RELATED DB: PDB REMARK 900 N- AND C-TERMINAL HELICES OF OAT LOV2 ( 404-546) ARE INVOLVED IN REMARK 900 LIGHT-INDUCED SIGNAL TRANSDUCTION (ROOM TEMPERATURE (293K) LIGHT REMARK 900 STRUCTURE OF LOV2 (404-546)) REMARK 900 RELATED ID: 2WKQ RELATED DB: PDB REMARK 900 STRUCTURE OF A PHOTOACTIVATABLE RAC1 CONTAINING THE LOV2 C450A REMARK 900 MUTANT DBREF 2WKR A 404 546 UNP O49003 O49003_AVESA 404 546 DBREF 2WKR A 547 723 UNP P63000 RAC1_HUMAN 4 180 SEQADV 2WKR MET A 392 UNP P63000 EXPRESSION TAG SEQADV 2WKR ARG A 393 UNP P63000 EXPRESSION TAG SEQADV 2WKR GLY A 394 UNP P63000 EXPRESSION TAG SEQADV 2WKR SER A 395 UNP P63000 EXPRESSION TAG SEQADV 2WKR HIS A 396 UNP P63000 EXPRESSION TAG SEQADV 2WKR HIS A 397 UNP P63000 EXPRESSION TAG SEQADV 2WKR HIS A 398 UNP P63000 EXPRESSION TAG SEQADV 2WKR HIS A 399 UNP P63000 EXPRESSION TAG SEQADV 2WKR HIS A 400 UNP P63000 EXPRESSION TAG SEQADV 2WKR HIS A 401 UNP P63000 EXPRESSION TAG SEQADV 2WKR GLY A 402 UNP P63000 EXPRESSION TAG SEQADV 2WKR SER A 403 UNP P63000 EXPRESSION TAG SEQADV 2WKR MET A 450 UNP O49003 CYS 450 ENGINEERED MUTATION SEQADV 2WKR LEU A 604 UNP P63000 GLN 61 ENGINEERED MUTATION SEQADV 2WKR HIS A 634 UNP P63000 GLU 91 ENGINEERED MUTATION SEQADV 2WKR HIS A 635 UNP P63000 ASN 92 ENGINEERED MUTATION SEQRES 1 A 332 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER LEU SEQRES 2 A 332 ALA THR THR LEU GLU ARG ILE GLU LYS ASN PHE VAL ILE SEQRES 3 A 332 THR ASP PRO ARG LEU PRO ASP ASN PRO ILE ILE PHE ALA SEQRES 4 A 332 SER ASP SER PHE LEU GLN LEU THR GLU TYR SER ARG GLU SEQRES 5 A 332 GLU ILE LEU GLY ARG ASN MET ARG PHE LEU GLN GLY PRO SEQRES 6 A 332 GLU THR ASP ARG ALA THR VAL ARG LYS ILE ARG ASP ALA SEQRES 7 A 332 ILE ASP ASN GLN THR GLU VAL THR VAL GLN LEU ILE ASN SEQRES 8 A 332 TYR THR LYS SER GLY LYS LYS PHE TRP ASN LEU PHE HIS SEQRES 9 A 332 LEU GLN PRO MET ARG ASP GLN LYS GLY ASP VAL GLN TYR SEQRES 10 A 332 PHE ILE GLY VAL GLN LEU ASP GLY THR GLU HIS VAL ARG SEQRES 11 A 332 ASP ALA ALA GLU ARG GLU GLY VAL MET LEU ILE LYS LYS SEQRES 12 A 332 THR ALA GLU ASN ILE ASP GLU ALA ALA LYS GLU LEU ILE SEQRES 13 A 332 LYS CYS VAL VAL VAL GLY ASP GLY ALA VAL GLY LYS THR SEQRES 14 A 332 CYS LEU LEU ILE SER TYR THR THR ASN ALA PHE PRO GLY SEQRES 15 A 332 GLU TYR ILE PRO THR VAL PHE ASP ASN TYR SER ALA ASN SEQRES 16 A 332 VAL MET VAL ASP GLY LYS PRO VAL ASN LEU GLY LEU TRP SEQRES 17 A 332 ASP THR ALA GLY LEU GLU ASP TYR ASP ARG LEU ARG PRO SEQRES 18 A 332 LEU SER TYR PRO GLN THR ASP VAL PHE LEU ILE CYS PHE SEQRES 19 A 332 SER LEU VAL SER PRO ALA SER PHE HIS HIS VAL ARG ALA SEQRES 20 A 332 LYS TRP TYR PRO GLU VAL ARG HIS HIS CYS PRO ASN THR SEQRES 21 A 332 PRO ILE ILE LEU VAL GLY THR LYS LEU ASP LEU ARG ASP SEQRES 22 A 332 ASP LYS ASP THR ILE GLU LYS LEU LYS GLU LYS LYS LEU SEQRES 23 A 332 THR PRO ILE THR TYR PRO GLN GLY LEU ALA MET ALA LYS SEQRES 24 A 332 GLU ILE GLY ALA VAL LYS TYR LEU GLU CYS SER ALA LEU SEQRES 25 A 332 THR GLN ARG GLY LEU LYS THR VAL PHE ASP GLU ALA ILE SEQRES 26 A 332 ARG ALA VAL LEU CYS PRO PRO HET GTP A1722 32 HET FMN A1723 31 HET MG A1724 1 HET CL A1725 1 HET CL A1726 1 HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 2 GTP C10 H16 N5 O14 P3 FORMUL 3 FMN C17 H21 N4 O9 P FORMUL 4 MG MG 2+ FORMUL 5 CL 2(CL 1-) FORMUL 7 HOH *215(H2 O) HELIX 1 1 THR A 407 ILE A 411 5 5 HELIX 2 2 SER A 431 GLU A 439 1 9 HELIX 3 3 SER A 441 LEU A 446 1 6 HELIX 4 4 ASN A 449 GLN A 454 5 6 HELIX 5 5 ASP A 459 ASN A 472 1 14 HELIX 6 6 ARG A 521 LYS A 544 1 24 HELIX 7 7 GLY A 558 ASN A 569 1 12 HELIX 8 8 LEU A 604 ASP A 608 5 5 HELIX 9 9 LEU A 610 TYR A 615 5 6 HELIX 10 10 SER A 629 LYS A 639 1 11 HELIX 11 11 LYS A 639 CYS A 648 1 10 HELIX 12 12 LYS A 659 ARG A 663 5 5 HELIX 13 13 ASP A 665 LYS A 675 1 11 HELIX 14 14 THR A 681 ILE A 692 1 12 HELIX 15 15 GLY A 707 CYS A 721 1 15 SHEET 1 AA 5 ILE A 427 ALA A 430 0 SHEET 2 AA 5 ASN A 414 THR A 418 -1 O ILE A 417 N ILE A 428 SHEET 3 AA 5 VAL A 506 GLY A 516 -1 O PHE A 509 N THR A 418 SHEET 4 AA 5 LYS A 489 ARG A 500 -1 O TRP A 491 N GLY A 516 SHEET 5 AA 5 VAL A 476 TYR A 483 -1 O VAL A 476 N LEU A 496 SHEET 1 AB 6 PHE A 580 VAL A 589 0 SHEET 2 AB 6 LYS A 592 THR A 601 -1 O LYS A 592 N VAL A 589 SHEET 3 AB 6 ILE A 547 GLY A 553 1 O ILE A 547 N GLY A 597 SHEET 4 AB 6 VAL A 620 SER A 626 1 O VAL A 620 N VAL A 550 SHEET 5 AB 6 ILE A 653 THR A 658 1 O ILE A 654 N ILE A 623 SHEET 6 AB 6 LYS A 696 GLU A 699 1 O LYS A 696 N LEU A 655 LINK MG MG A1724 OG1 THR A 560 1555 1555 2.15 LINK MG MG A1724 OG1 THR A 578 1555 1555 2.21 LINK MG MG A1724 O HOH A2212 1555 1555 2.29 LINK MG MG A1724 O1G GTP A1722 1555 1555 2.08 LINK MG MG A1724 O1B GTP A1722 1555 1555 2.14 LINK MG MG A1724 O HOH A2128 1555 1555 2.23 SITE 1 AC1 25 ASP A 554 GLY A 555 ALA A 556 VAL A 557 SITE 2 AC1 25 GLY A 558 LYS A 559 THR A 560 CYS A 561 SITE 3 AC1 25 TYR A 575 PRO A 577 THR A 578 GLY A 603 SITE 4 AC1 25 LYS A 659 ASP A 661 LEU A 662 SER A 701 SITE 5 AC1 25 ALA A 702 LEU A 703 MG A1724 HOH A2085 SITE 6 AC1 25 HOH A2095 HOH A2128 HOH A2212 HOH A2213 SITE 7 AC1 25 HOH A2214 SITE 1 AC2 22 VAL A 416 THR A 418 ASN A 425 ASN A 449 SITE 2 AC2 22 MET A 450 ARG A 451 LEU A 453 GLN A 454 SITE 3 AC2 22 VAL A 463 ILE A 466 ARG A 467 ILE A 470 SITE 4 AC2 22 ASN A 482 ASN A 492 PHE A 494 LEU A 496 SITE 5 AC2 22 GLY A 511 GLN A 513 HOH A2028 HOH A2037 SITE 6 AC2 22 HOH A2039 HOH A2215 SITE 1 AC3 5 THR A 560 THR A 578 GTP A1722 HOH A2128 SITE 2 AC3 5 HOH A2212 SITE 1 AC4 2 THR A 704 ARG A 706 SITE 1 AC5 2 SER A 626 LYS A 659 CRYST1 112.390 112.390 69.200 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008898 0.005137 0.000000 0.00000 SCALE2 0.000000 0.010274 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014451 0.00000 MASTER 344 0 5 15 11 0 17 6 0 0 0 26 END