HEADER OXIDOREDUCTASE 16-JUN-09 2WKO TITLE STRUCTURE OF METAL LOADED PATHOGENIC SOD1 MUTANT G93A. COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-154; COMPND 5 SYNONYM: SUPEROXIDE DISMUTASE; COMPND 6 EC: 1.15.1.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN]; COMPND 11 CHAIN: F; COMPND 12 FRAGMENT: RESIDUES 2-154; COMPND 13 SYNONYM: SUPEROXIDE DISMUTASE; COMPND 14 EC: 1.15.1.1; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: BLOOD; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: YEP351; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 ORGAN: BLOOD; SOURCE 15 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 16 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: YEP351 KEYWDS AMYOTROPHIC LATERAL SCLEROSIS, PHOSPHOPROTEIN, KEYWDS 2 OXIDOREDUCTASE, DISEASE MUTATION, NEURODEGENERATION, KEYWDS 3 ACETYLATION, ANTIOXIDANT, METAL-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR S.V.ANTONYUK,A.GALALELDEEN,R.STRANGE,L.WHITSON,N.NARAYANA, AUTHOR 2 A.TAYLOR,J.P.SCHUERMANN,S.P.HOLLOWAY,S.S.HASNAIN,P.J.HART REVDAT 2 08-DEC-09 2WKO 1 JRNL REVDAT 1 24-NOV-09 2WKO 0 JRNL AUTH A.GALALELDEEN,R.W.STRANGE,L.J.WHITSON,S.V.ANTONYUK, JRNL AUTH 2 N.NARAYANA,A.B.TAYLOR,J.P.SCHUERMANN,S.P.HOLLOWAY, JRNL AUTH 3 S.S.HASNAIN,P.J.HART JRNL TITL STRUCTURAL AND BIOPHYSICAL PROPERTIES OF METAL- JRNL TITL 2 FREE PATHOGENIC SOD1 MUTANTS A4V AND G93A. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 492 40 2009 JRNL REFN ISSN 0003-9861 JRNL PMID 19800308 JRNL DOI 10.1016/J.ABB.2009.09.020 REMARK 2 REMARK 2 RESOLUTION. 1.97 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0003 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.97 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 93.65 REMARK 3 NUMBER OF REFLECTIONS : 17148 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.17666 REMARK 3 R VALUE (WORKING SET) : 0.17360 REMARK 3 FREE R VALUE : 0.23072 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 914 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.972 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.023 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1159 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.214 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.276 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2214 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 291 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.5 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.188 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.12 REMARK 3 B22 (A**2) : -1.69 REMARK 3 B33 (A**2) : -0.45 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : -1.41 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.213 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.436 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2263 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3056 ; 1.520 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 306 ;10.050 ; 5.065 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;39.566 ;25.579 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 367 ;16.025 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;11.552 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 338 ; 0.104 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1720 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1080 ; 0.214 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1496 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 255 ; 0.194 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 7 ; 0.174 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.247 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.167 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1509 ; 1.038 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2379 ; 1.668 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 787 ; 2.667 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 677 ; 4.060 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2WKO COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-JUN-09. REMARK 100 THE PDBE ID CODE IS EBI-40147. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-FEB-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : HKL2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19287 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.97 REMARK 200 RESOLUTION RANGE LOW (A) : 23.58 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 2.6 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.4 REMARK 200 R MERGE FOR SHELL (I) : 0.20 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.40 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2C9V REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% P3350, 0.2 M AMMONIUM IODIDE REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 23.57850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2060 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.32 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 100 CG CD REMARK 470 ILE F 112 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 96 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 26 16.02 57.90 REMARK 500 ASN F 65 64.81 -150.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 154 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 ND1 REMARK 620 2 HIS A 120 NE2 98.0 REMARK 620 3 HIS A 48 NE2 135.1 126.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU F 154 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 120 NE2 REMARK 620 2 HIS F 46 ND1 100.3 REMARK 620 3 HIS F 48 NE2 121.6 137.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 155 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 83 OD1 REMARK 620 2 HIS A 71 ND1 91.9 REMARK 620 3 HIS A 80 ND1 115.4 121.8 REMARK 620 4 HIS A 63 ND1 110.2 102.5 112.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN F 155 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 80 ND1 REMARK 620 2 HIS F 71 ND1 123.8 REMARK 620 3 HIS F 63 ND1 109.9 104.2 REMARK 620 4 ASP F 83 OD1 115.8 96.1 104.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 160 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 161 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU F 154 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN F 155 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD F 161 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L3N RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF REDUCED DIMERIC REMARK 900 COPPER ZINC SOD:THE STRUCTURAL EFFECTS OF REMARK 900 DIMERIZATION REMARK 900 RELATED ID: 2AF2 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF DISULFIDE REDUCED AND REMARK 900 COPPER DEPLETEDHUMAN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1UXL RELATED DB: PDB REMARK 900 I113T MUTANT OF HUMAN SOD1 REMARK 900 RELATED ID: 1PTZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE HUMAN CU, ZN REMARK 900 SUPEROXIDE DISMUTASE,FAMILIAL AMYOTROPHIC REMARK 900 LATERAL SCLEROSIS (FALS) MUTANT H43R REMARK 900 RELATED ID: 1OEZ RELATED DB: PDB REMARK 900 ZN HIS46ARG MUTANT OF HUMAN CU, ZN REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 2VR8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF REMARK 900 HUMAN CU,ZN SUPEROXIDE DISMUTASE (CUZNSOD) REMARK 900 AT 1.36 A RESOLUTION REMARK 900 RELATED ID: 1RK7 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF APO CU,ZN SUPEROXIDE REMARK 900 DISMUTASE: ROLEOF METAL IONS IN PROTEIN REMARK 900 FOLDING REMARK 900 RELATED ID: 2VR7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF REMARK 900 HUMAN CU,ZN SUPEROXIDE DISMUTASE (CUZNSOD) REMARK 900 AT 1.58 A RESOLUTION REMARK 900 RELATED ID: 1HL4 RELATED DB: PDB REMARK 900 THE STRUCTURE OF APO TYPE HUMAN CU, ZN REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1AZV RELATED DB: PDB REMARK 900 FAMILIAL ALS MUTANT G37R CUZNSOD (HUMAN) REMARK 900 RELATED ID: 2C9S RELATED DB: PDB REMARK 900 1.24 ANGSTROMS RESOLUTION STRUCTURE OF ZN- REMARK 900 ZN HUMAN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1MFM RELATED DB: PDB REMARK 900 MONOMERIC HUMAN SOD MUTANT F50E/G51E/E133Q REMARK 900 AT ATOMIC RESOLUTION REMARK 900 RELATED ID: 2V0A RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION CRYSTAL STRUCTURE OF HUMAN REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 4SOD RELATED DB: PDB REMARK 900 CU,ZN SUPEROXIDE DISMUTASE MUTANT WITH CYS REMARK 900 6 REPLACED BY ALA AND CYS 111 REPLACED REMARK 900 BY SER (C6A,C111S) WITH AN 18-RESIDUE REMARK 900 HEPARIN-BINDING PEPTIDE FUSED TO THE C- REMARK 900 TERMINUS (THEORETICAL MODEL) REMARK 900 RELATED ID: 1OZU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FAMILIAL ALS MUTANT REMARK 900 S134N OF HUMAN CU,ZN SUPEROXIDE DISMUTASE ( REMARK 900 CUZNSOD) TO 1.3A RESOLUTION REMARK 900 RELATED ID: 1DSW RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF A MONOMERIC, REMARK 900 REDUCED FORM OFHUMAN COPPER, ZINC SUPEROXIDE REMARK 900 DISMUTASE BEARING THE SAMECHARGE AS THE REMARK 900 NATIVE PROTEIN REMARK 900 RELATED ID: 2VR6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF G85R ALS MUTANT OF REMARK 900 HUMAN CU,ZN SUPEROXIDE DISMUTASE (CUZNSOD) REMARK 900 AT 1.3 A RESOLUTION REMARK 900 RELATED ID: 1KMG RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF MONOMERIC COPPER- REMARK 900 FREE SUPEROXIDEDISMUTASE REMARK 900 RELATED ID: 1OZT RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF APO-H46R FAMILIAL ALS REMARK 900 MUTANT HUMAN CU,ZN SUPEROXIDE DISMUTASE ( REMARK 900 CUZNSOD) TO 2.5A RESOLUTION REMARK 900 RELATED ID: 2C9V RELATED DB: PDB REMARK 900 ATOMIC RESOLUTION STRUCTURE OF CU-ZN HUMAN REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1N18 RELATED DB: PDB REMARK 900 THERMOSTABLE MUTANT OF HUMAN SUPEROXIDE REMARK 900 DISMUTASE, C6A,C111S REMARK 900 RELATED ID: 1BA9 RELATED DB: PDB REMARK 900 THE SOLUTION STRUCTURE OF REDUCED MONOMERIC REMARK 900 SUPEROXIDE DISMUTASE, NMR, 36 STRUCTURES REMARK 900 RELATED ID: 1PU0 RELATED DB: PDB REMARK 900 STRUCTURE OF HUMAN CU,ZN SUPEROXIDE REMARK 900 DISMUTASE REMARK 900 RELATED ID: 1FUN RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE MUTANT WITH LYS 136 REMARK 900 REPLACED BY GLU, CYS 6 REPLACED BY ALA REMARK 900 AND CYS 111 REPLACED BY SER (K136E, C6A, REMARK 900 C111S) REMARK 900 RELATED ID: 1SOS RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE MUTANT WITH CYS 6 REMARK 900 REPLACED BY ALA AND CYS 111 REPLACED BY REMARK 900 SER (C6A, C111S) REMARK 900 RELATED ID: 1N19 RELATED DB: PDB REMARK 900 STRUCTURE OF THE HSOD A4V MUTANT REMARK 900 RELATED ID: 2C9U RELATED DB: PDB REMARK 900 1.24 ANGSTROMS RESOLUTION STRUCTURE OF AS- REMARK 900 ISOLATED CU-ZN HUMAN SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1HL5 RELATED DB: PDB REMARK 900 THE STRUCTURE OF HOLO TYPE HUMAN CU, ZN REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1P1V RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FALS-ASSOCIATED HUMAN REMARK 900 COPPER-ZINCSUPEROXIDE DISMUTASE (CUZNSOD) MUTANT REMARK 900 D125H TO 1.4A REMARK 900 RELATED ID: 1SPD RELATED DB: PDB REMARK 900 SUPEROXIDE DISMUTASE REMARK 900 RELATED ID: 1UXM RELATED DB: PDB REMARK 900 A4V MUTANT OF HUMAN SOD1 REMARK 900 RELATED ID: 3GZO RELATED DB: PDB REMARK 900 RELATED ID: 3GZP RELATED DB: PDB REMARK 900 RELATED ID: 3GZQ RELATED DB: PDB DBREF 2WKO A 0 0 PDB 2WKO 2WKO 0 0 DBREF 2WKO A 1 153 UNP P00441 SODC_HUMAN 2 154 DBREF 2WKO F 0 0 PDB 2WKO 2WKO 0 0 DBREF 2WKO F 1 153 UNP P00441 SODC_HUMAN 2 154 SEQADV 2WKO ALA A 93 UNP P00441 GLY 94 ENGINEERED MUTATION SEQADV 2WKO ALA F 93 UNP P00441 GLY 94 ENGINEERED MUTATION SEQRES 1 A 154 ACE ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY SEQRES 2 A 154 PRO VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER SEQRES 3 A 154 ASN GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU SEQRES 4 A 154 THR GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY SEQRES 5 A 154 ASP ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE SEQRES 6 A 154 ASN PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU SEQRES 7 A 154 GLU ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP SEQRES 8 A 154 LYS ASP ALA VAL ALA ASP VAL SER ILE GLU ASP SER VAL SEQRES 9 A 154 ILE SER LEU SER GLY ASP HIS CYS ILE ILE GLY ARG THR SEQRES 10 A 154 LEU VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY SEQRES 11 A 154 GLY ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER SEQRES 12 A 154 ARG LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN SEQRES 1 F 154 ACE ALA THR LYS ALA VAL CYS VAL LEU LYS GLY ASP GLY SEQRES 2 F 154 PRO VAL GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER SEQRES 3 F 154 ASN GLY PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU SEQRES 4 F 154 THR GLU GLY LEU HIS GLY PHE HIS VAL HIS GLU PHE GLY SEQRES 5 F 154 ASP ASN THR ALA GLY CYS THR SER ALA GLY PRO HIS PHE SEQRES 6 F 154 ASN PRO LEU SER ARG LYS HIS GLY GLY PRO LYS ASP GLU SEQRES 7 F 154 GLU ARG HIS VAL GLY ASP LEU GLY ASN VAL THR ALA ASP SEQRES 8 F 154 LYS ASP ALA VAL ALA ASP VAL SER ILE GLU ASP SER VAL SEQRES 9 F 154 ILE SER LEU SER GLY ASP HIS CSO ILE ILE GLY ARG THR SEQRES 10 F 154 LEU VAL VAL HIS GLU LYS ALA ASP ASP LEU GLY LYS GLY SEQRES 11 F 154 GLY ASN GLU GLU SER THR LYS THR GLY ASN ALA GLY SER SEQRES 12 F 154 ARG LEU ALA CYS GLY VAL ILE GLY ILE ALA GLN MODRES 2WKO CSO F 111 CYS CYSTEINE SULFOXIDE HET ACE A 0 3 HET CU A 154 1 HET ZN A 155 1 HET IOD A 160 2 HET IOD A 161 1 HET ACE F 0 3 HET CSO F 111 7 HET CU F 154 1 HET ZN F 155 1 HET IOD F 161 1 HETNAM CU COPPER (II) ION HETNAM ACE ACETYL GROUP HETNAM ZN ZINC ION HETNAM CSO S-HYDROXYCYSTEINE HETNAM IOD IODIDE ION FORMUL 3 CU 2(CU 2+) FORMUL 4 ACE 2(C2 H4 O) FORMUL 5 ZN 2(ZN 2+) FORMUL 6 CSO C3 H7 N O3 S FORMUL 7 HOH *291(H2 O) HELIX 1 1 ALA A 55 GLY A 61 5 7 HELIX 2 2 ASN A 131 GLY A 138 1 8 HELIX 3 3 ALA F 55 GLY F 61 5 7 HELIX 4 4 SER F 107 CSO F 111 5 5 HELIX 5 5 GLU F 133 GLY F 138 1 6 SHEET 1 AA 5 ALA A 95 ASP A 101 0 SHEET 2 AA 5 VAL A 29 LYS A 36 -1 O VAL A 29 N ASP A 101 SHEET 3 AA 5 GLN A 15 GLN A 22 -1 O GLN A 15 N LYS A 36 SHEET 4 AA 5 THR A 2 LEU A 8 -1 O THR A 2 N GLN A 22 SHEET 5 AA 5 GLY A 150 ALA A 152 -1 O GLY A 150 N VAL A 5 SHEET 1 AB 4 ASP A 83 ALA A 89 0 SHEET 2 AB 4 GLY A 41 HIS A 48 -1 O GLY A 41 N ALA A 89 SHEET 3 AB 4 THR A 116 HIS A 120 -1 O THR A 116 N HIS A 48 SHEET 4 AB 4 ARG A 143 VAL A 148 -1 N LEU A 144 O VAL A 119 SHEET 1 FA 5 ALA F 95 ASP F 101 0 SHEET 2 FA 5 VAL F 29 LYS F 36 -1 O VAL F 29 N ASP F 101 SHEET 3 FA 5 GLN F 15 GLN F 22 -1 O GLN F 15 N LYS F 36 SHEET 4 FA 5 THR F 2 LEU F 8 -1 O THR F 2 N GLN F 22 SHEET 5 FA 5 GLY F 150 ILE F 151 -1 O GLY F 150 N VAL F 5 SHEET 1 FB 4 ASP F 83 ALA F 89 0 SHEET 2 FB 4 GLY F 41 HIS F 48 -1 O GLY F 41 N ALA F 89 SHEET 3 FB 4 THR F 116 HIS F 120 -1 O THR F 116 N HIS F 48 SHEET 4 FB 4 ARG F 143 VAL F 148 -1 N LEU F 144 O VAL F 119 SSBOND 1 CYS A 57 CYS A 146 1555 1555 2.13 SSBOND 2 CYS F 57 CYS F 146 1555 1555 2.13 LINK C ACE A 0 N ALA A 1 1555 1555 1.34 LINK CU CU A 154 NE2 HIS A 120 1555 1555 1.82 LINK CU CU A 154 NE2 HIS A 48 1555 1555 2.07 LINK CU CU A 154 ND1 HIS A 46 1555 1555 2.17 LINK ZN ZN A 155 OD1 ASP A 83 1555 1555 1.94 LINK ZN ZN A 155 ND1 HIS A 71 1555 1555 2.24 LINK ZN ZN A 155 ND1 HIS A 80 1555 1555 2.02 LINK ZN ZN A 155 ND1 HIS A 63 1555 1555 2.00 LINK C ACE F 0 N ALA F 1 1555 1555 1.34 LINK C HIS F 110 N CSO F 111 1555 1555 1.34 LINK C CSO F 111 N ILE F 112 1555 1555 1.33 LINK CU CU F 154 NE2 HIS F 120 1555 1555 2.10 LINK CU CU F 154 NE2 HIS F 48 1555 1555 2.04 LINK CU CU F 154 ND1 HIS F 46 1555 1555 2.16 LINK ZN ZN F 155 OD1 ASP F 83 1555 1555 2.04 LINK ZN ZN F 155 ND1 HIS F 63 1555 1555 2.03 LINK ZN ZN F 155 ND1 HIS F 71 1555 1555 2.04 LINK ZN ZN F 155 ND1 HIS F 80 1555 1555 2.09 SITE 1 AC1 4 HIS A 46 HIS A 48 HIS A 63 HIS A 120 SITE 1 AC2 4 HIS A 63 HIS A 71 HIS A 80 ASP A 83 SITE 1 AC3 2 HOH A2128 HOH A2129 SITE 1 AC4 1 HOH F2102 SITE 1 AC5 4 HIS F 46 HIS F 48 HIS F 63 HIS F 120 SITE 1 AC6 4 HIS F 63 HIS F 71 HIS F 80 ASP F 83 SITE 1 AC7 1 HOH F2087 CRYST1 51.488 47.157 56.356 90.00 90.38 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019422 0.000000 0.000129 0.00000 SCALE2 0.000000 0.021206 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017745 0.00000 MASTER 448 0 10 5 18 0 7 6 0 0 0 24 END