HEADER OXIDOREDUCTASE 24-FEB-09 2WBA TITLE PROPERTIES OF TRYPANOTHIONE REDUCTASE FROM T. BRUCEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPANOTHIONE REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.8.1.12; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 5702; SOURCE 4 STRAIN: S427; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3) PLYSS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS REDOX-ACTIVE CENTER, FLAVOPROTEIN, TRYPNOTHIONE METABOLISM KEYWDS 2 OXIDOREDUCTASE, EXPDTA X-RAY DIFFRACTION AUTHOR D.JONES,A.ARIZA,W.H.A.CHOW,S.L.OZA,A.H.FAIRLAMB REVDAT 2 19-MAY-10 2WBA 1 KEYWDS SPRSDE REMARK REVDAT 1 24-NOV-09 2WBA 0 SPRSDE 19-MAY-10 2WBA 2VE2 JRNL AUTH D.JONES,A.ARIZA,W.H.A.CHOW,S.L.OZA,A.H.FAIRLAMB JRNL TITL COMPARATIVE STRUCTURAL, KINETIC AND INHIBITOR JRNL TITL 2 STUDIES OF TRYPANOSOMA BRUCEI TRYPANOTHIONE JRNL TITL 3 REDUCTASE WITH T. CRUZI. JRNL REF MOL.BIOCHEM.PARASITOL. V. 169 12 2010 JRNL REFN ISSN 0166-6851 JRNL PMID 19747949 JRNL DOI 10.1016/J.MOLBIOPARA.2009.09.002 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0082 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 102.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 94.81 REMARK 3 NUMBER OF REFLECTIONS : 55398 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.18315 REMARK 3 R VALUE (WORKING SET) : 0.18080 REMARK 3 FREE R VALUE : 0.22715 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 2952 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.300 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.360 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3563 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.58 REMARK 3 BIN R VALUE (WORKING SET) : 0.217 REMARK 3 BIN FREE R VALUE SET COUNT : 182 REMARK 3 BIN FREE R VALUE : 0.290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7516 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 243 REMARK 3 SOLVENT ATOMS : 786 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.666 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.11 REMARK 3 B22 (A**2) : -1.04 REMARK 3 B33 (A**2) : -0.07 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.273 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.213 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.127 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.072 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.907 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7935 ; 0.004 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10806 ; 0.956 ; 1.996 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1006 ; 5.673 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 318 ;34.010 ;24.591 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1299 ;13.678 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 37 ;13.089 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1207 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5881 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3469 ; 0.186 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 5410 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 720 ; 0.118 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.158 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.122 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4887 ; 0.445 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 7906 ; 0.864 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3048 ; 1.321 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2885 ; 2.217 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. U VALUES REFINED INDIVIDUALLY REMARK 4 REMARK 4 2WBA COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-FEB-09. REMARK 100 THE PDBE ID CODE IS EBI-38844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-AUG-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5428 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS (OSMIC BLUE) REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55415 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.30 REMARK 200 RESOLUTION RANGE LOW (A) : 41.07 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 5.0 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.4 REMARK 200 R MERGE FOR SHELL (I) : 0.10 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 9.20 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1BZL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PH 8.0, 2.0 REMARK 280 AMMONIUM SULFATE, 5 % PEG 400 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.81500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.64400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 66.35700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.64400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.81500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 66.35700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 491 REMARK 465 LEU A 492 REMARK 465 MET B 1 REMARK 465 ASN B 491 REMARK 465 LEU B 492 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 12 52.09 -99.58 REMARK 500 TYR A 45 -74.22 67.57 REMARK 500 ALA A 159 50.54 -141.54 REMARK 500 ASN A 223 -168.00 -113.95 REMARK 500 PHE A 367 47.42 -87.26 REMARK 500 ALA B 12 53.46 -97.05 REMARK 500 TYR B 45 -69.35 71.59 REMARK 500 ASP B 84 98.41 -67.47 REMARK 500 ALA B 159 50.95 -148.29 REMARK 500 ARG B 331 -106.42 -100.14 REMARK 500 PHE B 367 47.95 -87.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NDP B 1496 REMARK 610 NDP A 1496 REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A1491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B1491 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1492 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1493 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1493 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1494 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1495 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1494 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1495 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B1496 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A1496 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A1497 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1497 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1498 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE ORF WAS IDENTIFIED FROM A PUTATIVE TRYPANOTHIONE REMARK 999 REDUCTASE FROM T. BRUCEI STRAIN S427 IN THE GENEDB. REMARK 999 THE SAME ORF OUT GB TB10.406.0520 ENTRY (FROM STRAIN S927) REMARK 999 WAS CLONED OF A DIFFERENT T. BRUCEI BRUCEI STRAIN REMARK 999 (STRAIN S427). THE ORF OF THE PROTEIN IS NEARLY IDENTICAL REMARK 999 TO THE TB10.406.0520 ORF (THERE ARE ONLY 2 NUCLEOTIDES REMARK 999 THAT ARE DIFFERENT OUT OF 1479 BASE PAIRS AND NEITHER OF REMARK 999 THESE CHANGE THE PROTEIN SEQUENCE, WHICH IS 100% IDENTICAL REMARK 999 BETWEEN BOTH STRAINS: S927 AND S427 DBREF 2WBA A 1 492 PDB 2WBA 2WBA 1 492 DBREF 2WBA B 1 492 PDB 2WBA 2WBA 1 492 SEQRES 1 A 492 MET SER LYS ALA PHE ASP LEU VAL VAL ILE GLY ALA GLY SEQRES 2 A 492 SER GLY GLY LEU GLU ALA GLY TRP ASN ALA ALA THR LEU SEQRES 3 A 492 TYR GLY LYS ARG VAL ALA VAL VAL ASP VAL GLN THR SER SEQRES 4 A 492 HIS GLY PRO PRO PHE TYR ALA ALA LEU GLY GLY THR CYS SEQRES 5 A 492 VAL ASN VAL GLY CYS VAL PRO LYS LYS LEU MET VAL THR SEQRES 6 A 492 GLY ALA GLN TYR MET ASP HIS LEU ARG GLU SER ALA GLY SEQRES 7 A 492 PHE GLY TRP GLU PHE ASP GLY SER SER VAL LYS ALA ASN SEQRES 8 A 492 TRP LYS LYS LEU ILE ALA ALA LYS ASN GLU ALA VAL LEU SEQRES 9 A 492 ASP ILE ASN LYS SER TYR GLU GLY MET PHE ASN ASP THR SEQRES 10 A 492 GLU GLY LEU ASP PHE PHE LEU GLY TRP GLY SER LEU GLU SEQRES 11 A 492 SER LYS ASN VAL VAL VAL VAL ARG GLU THR ALA ASP PRO SEQRES 12 A 492 LYS SER ALA VAL LYS GLU ARG LEU GLN ALA ASP HIS ILE SEQRES 13 A 492 LEU LEU ALA THR GLY SER TRP PRO GLN MET PRO ALA ILE SEQRES 14 A 492 PRO GLY ILE GLU HIS CYS ILE SER SER ASN GLU ALA PHE SEQRES 15 A 492 TYR LEU PRO GLU PRO PRO ARG ARG VAL LEU THR VAL GLY SEQRES 16 A 492 GLY GLY PHE ILE SER VAL GLU PHE ALA GLY ILE PHE ASN SEQRES 17 A 492 ALA TYR LYS PRO PRO GLY GLY LYS VAL THR LEU CYS TYR SEQRES 18 A 492 ARG ASN ASN LEU ILE LEU ARG GLY PHE ASP GLU THR ILE SEQRES 19 A 492 ARG GLU GLU VAL THR LYS GLN LEU THR ALA ASN GLY ILE SEQRES 20 A 492 GLU ILE MET THR ASN GLU ASN PRO ALA LYS VAL SER LEU SEQRES 21 A 492 ASN THR ASP GLY SER LYS HIS VAL THR PHE GLU SER GLY SEQRES 22 A 492 LYS THR LEU ASP VAL ASP VAL VAL MET MET ALA ILE GLY SEQRES 23 A 492 ARG ILE PRO ARG THR ASN ASP LEU GLN LEU GLY ASN VAL SEQRES 24 A 492 GLY VAL LYS LEU THR PRO LYS GLY GLY VAL GLN VAL ASP SEQRES 25 A 492 GLU PHE SER ARG THR ASN VAL PRO ASN ILE TYR ALA ILE SEQRES 26 A 492 GLY ASP ILE THR ASP ARG LEU MET LEU THR PRO VAL ALA SEQRES 27 A 492 ILE ASN GLU GLY ALA ALA LEU VAL ASP THR VAL PHE GLY SEQRES 28 A 492 ASN LYS PRO ARG LYS THR ASP HIS THR ARG VAL ALA SER SEQRES 29 A 492 ALA VAL PHE SER ILE PRO PRO ILE GLY THR CYS GLY LEU SEQRES 30 A 492 ILE GLU GLU VAL ALA ALA LYS GLU PHE GLU LYS VAL ALA SEQRES 31 A 492 VAL TYR MET SER SER PHE THR PRO LEU MET HIS ASN ILE SEQRES 32 A 492 SER GLY SER LYS TYR LYS LYS PHE VAL ALA LYS ILE VAL SEQRES 33 A 492 THR ASN HIS SER ASP GLY THR VAL LEU GLY VAL HIS LEU SEQRES 34 A 492 LEU GLY ASP GLY ALA PRO GLU ILE ILE GLN ALA VAL GLY SEQRES 35 A 492 VAL CYS LEU ARG LEU ASN ALA LYS ILE SER ASP PHE TYR SEQRES 36 A 492 ASN THR ILE GLY VAL HIS PRO THR SER ALA GLU GLU LEU SEQRES 37 A 492 CYS SER MET ARG THR PRO SER TYR TYR TYR VAL LYS GLY SEQRES 38 A 492 GLU LYS MET GLU LYS LEU PRO ASP SER ASN LEU SEQRES 1 B 492 MET SER LYS ALA PHE ASP LEU VAL VAL ILE GLY ALA GLY SEQRES 2 B 492 SER GLY GLY LEU GLU ALA GLY TRP ASN ALA ALA THR LEU SEQRES 3 B 492 TYR GLY LYS ARG VAL ALA VAL VAL ASP VAL GLN THR SER SEQRES 4 B 492 HIS GLY PRO PRO PHE TYR ALA ALA LEU GLY GLY THR CYS SEQRES 5 B 492 VAL ASN VAL GLY CYS VAL PRO LYS LYS LEU MET VAL THR SEQRES 6 B 492 GLY ALA GLN TYR MET ASP HIS LEU ARG GLU SER ALA GLY SEQRES 7 B 492 PHE GLY TRP GLU PHE ASP GLY SER SER VAL LYS ALA ASN SEQRES 8 B 492 TRP LYS LYS LEU ILE ALA ALA LYS ASN GLU ALA VAL LEU SEQRES 9 B 492 ASP ILE ASN LYS SER TYR GLU GLY MET PHE ASN ASP THR SEQRES 10 B 492 GLU GLY LEU ASP PHE PHE LEU GLY TRP GLY SER LEU GLU SEQRES 11 B 492 SER LYS ASN VAL VAL VAL VAL ARG GLU THR ALA ASP PRO SEQRES 12 B 492 LYS SER ALA VAL LYS GLU ARG LEU GLN ALA ASP HIS ILE SEQRES 13 B 492 LEU LEU ALA THR GLY SER TRP PRO GLN MET PRO ALA ILE SEQRES 14 B 492 PRO GLY ILE GLU HIS CYS ILE SER SER ASN GLU ALA PHE SEQRES 15 B 492 TYR LEU PRO GLU PRO PRO ARG ARG VAL LEU THR VAL GLY SEQRES 16 B 492 GLY GLY PHE ILE SER VAL GLU PHE ALA GLY ILE PHE ASN SEQRES 17 B 492 ALA TYR LYS PRO PRO GLY GLY LYS VAL THR LEU CYS TYR SEQRES 18 B 492 ARG ASN ASN LEU ILE LEU ARG GLY PHE ASP GLU THR ILE SEQRES 19 B 492 ARG GLU GLU VAL THR LYS GLN LEU THR ALA ASN GLY ILE SEQRES 20 B 492 GLU ILE MET THR ASN GLU ASN PRO ALA LYS VAL SER LEU SEQRES 21 B 492 ASN THR ASP GLY SER LYS HIS VAL THR PHE GLU SER GLY SEQRES 22 B 492 LYS THR LEU ASP VAL ASP VAL VAL MET MET ALA ILE GLY SEQRES 23 B 492 ARG ILE PRO ARG THR ASN ASP LEU GLN LEU GLY ASN VAL SEQRES 24 B 492 GLY VAL LYS LEU THR PRO LYS GLY GLY VAL GLN VAL ASP SEQRES 25 B 492 GLU PHE SER ARG THR ASN VAL PRO ASN ILE TYR ALA ILE SEQRES 26 B 492 GLY ASP ILE THR ASP ARG LEU MET LEU THR PRO VAL ALA SEQRES 27 B 492 ILE ASN GLU GLY ALA ALA LEU VAL ASP THR VAL PHE GLY SEQRES 28 B 492 ASN LYS PRO ARG LYS THR ASP HIS THR ARG VAL ALA SER SEQRES 29 B 492 ALA VAL PHE SER ILE PRO PRO ILE GLY THR CYS GLY LEU SEQRES 30 B 492 ILE GLU GLU VAL ALA ALA LYS GLU PHE GLU LYS VAL ALA SEQRES 31 B 492 VAL TYR MET SER SER PHE THR PRO LEU MET HIS ASN ILE SEQRES 32 B 492 SER GLY SER LYS TYR LYS LYS PHE VAL ALA LYS ILE VAL SEQRES 33 B 492 THR ASN HIS SER ASP GLY THR VAL LEU GLY VAL HIS LEU SEQRES 34 B 492 LEU GLY ASP GLY ALA PRO GLU ILE ILE GLN ALA VAL GLY SEQRES 35 B 492 VAL CYS LEU ARG LEU ASN ALA LYS ILE SER ASP PHE TYR SEQRES 36 B 492 ASN THR ILE GLY VAL HIS PRO THR SER ALA GLU GLU LEU SEQRES 37 B 492 CYS SER MET ARG THR PRO SER TYR TYR TYR VAL LYS GLY SEQRES 38 B 492 GLU LYS MET GLU LYS LEU PRO ASP SER ASN LEU HET FAD A1491 53 HET FAD B1491 53 HET GOL A1492 6 HET GOL B1492 6 HET GOL A1493 6 HET GOL B1493 6 HET GOL B1494 6 HET GOL B1495 6 HET GOL A1494 6 HET GOL A1495 6 HET NDP B1496 39 HET NDP A1496 27 HET PG4 A1497 13 HET SO4 B1497 5 HET SO4 A1498 5 HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE- HETNAM 2 NDP DINUCLEOTIDE PHOSPHATE FORMUL 3 PG4 C8 H18 O5 FORMUL 4 FAD 2(C27 H33 N9 O15 P2) FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 GOL 8(C3 H8 O3) FORMUL 7 NDP 2(C21 H30 N7 O17 P3) FORMUL 8 HOH *786(H2 O1) HELIX 1 1 GLY A 13 GLY A 28 1 16 HELIX 2 2 GLY A 49 GLY A 56 1 8 HELIX 3 3 GLY A 56 SER A 76 1 21 HELIX 4 4 ALA A 77 PHE A 79 5 3 HELIX 5 5 ASP A 84 VAL A 88 5 5 HELIX 6 6 ASN A 91 THR A 117 1 27 HELIX 7 7 GLY A 171 CYS A 175 5 5 HELIX 8 8 SER A 178 PHE A 182 1 5 HELIX 9 9 GLY A 197 LYS A 211 1 15 HELIX 10 10 ASP A 231 ALA A 244 1 14 HELIX 11 11 GLN A 295 VAL A 299 5 5 HELIX 12 12 GLY A 326 ASP A 330 5 5 HELIX 13 13 LEU A 334 PHE A 350 1 17 HELIX 14 14 ILE A 378 PHE A 386 1 9 HELIX 15 15 PRO A 398 GLY A 405 1 8 HELIX 16 16 GLY A 433 LEU A 447 1 15 HELIX 17 17 LYS A 450 ASN A 456 1 7 HELIX 18 18 SER A 464 SER A 470 5 7 HELIX 19 19 GLY B 13 GLY B 28 1 16 HELIX 20 20 GLY B 49 GLY B 56 1 8 HELIX 21 21 GLY B 56 SER B 76 1 21 HELIX 22 22 ALA B 77 PHE B 79 5 3 HELIX 23 23 ASP B 84 VAL B 88 5 5 HELIX 24 24 ASN B 91 THR B 117 1 27 HELIX 25 25 GLY B 171 CYS B 175 5 5 HELIX 26 26 SER B 177 PHE B 182 1 6 HELIX 27 27 GLY B 197 LYS B 211 1 15 HELIX 28 28 ASP B 231 ASN B 245 1 15 HELIX 29 29 THR B 291 GLN B 295 5 5 HELIX 30 30 GLY B 326 ASP B 330 5 5 HELIX 31 31 LEU B 334 ASN B 352 1 19 HELIX 32 32 ILE B 378 PHE B 386 1 9 HELIX 33 33 PRO B 398 GLY B 405 1 8 HELIX 34 34 GLY B 433 LEU B 447 1 15 HELIX 35 35 LYS B 450 ASN B 456 1 7 HELIX 36 36 SER B 464 SER B 470 5 7 SHEET 1 AA 6 LEU A 120 LEU A 124 0 SHEET 2 AA 6 VAL A 31 ASP A 35 1 O VAL A 31 N ASP A 121 SHEET 3 AA 6 LYS A 3 ILE A 10 1 O LEU A 7 N ALA A 32 SHEET 4 AA 6 VAL A 147 LEU A 158 1 O ARG A 150 N LYS A 3 SHEET 5 AA 6 VAL A 134 ARG A 138 -1 O VAL A 135 N LEU A 151 SHEET 6 AA 6 TRP A 126 SER A 131 -1 O TRP A 126 N ARG A 138 SHEET 1 AB 5 LEU A 120 LEU A 124 0 SHEET 2 AB 5 VAL A 31 ASP A 35 1 O VAL A 31 N ASP A 121 SHEET 3 AB 5 LYS A 3 ILE A 10 1 O LEU A 7 N ALA A 32 SHEET 4 AB 5 VAL A 147 LEU A 158 1 O ARG A 150 N LYS A 3 SHEET 5 AB 5 ILE A 322 ALA A 324 1 O TYR A 323 N LEU A 158 SHEET 1 AC 2 TRP A 81 GLU A 82 0 SHEET 2 AC 2 LYS B 89 ALA B 90 -1 O LYS B 89 N GLU A 82 SHEET 1 AD 2 LYS A 89 ALA A 90 0 SHEET 2 AD 2 TRP B 81 GLU B 82 -1 O GLU B 82 N LYS A 89 SHEET 1 AE 2 SER A 162 PRO A 164 0 SHEET 2 AE 2 ARG A 287 PRO A 289 -1 O ILE A 288 N TRP A 163 SHEET 1 AF 5 ILE A 176 SER A 177 0 SHEET 2 AF 5 VAL A 280 MET A 283 1 O VAL A 281 N ILE A 176 SHEET 3 AF 5 ARG A 190 VAL A 194 1 O LEU A 192 N MET A 282 SHEET 4 AF 5 LYS A 216 TYR A 221 1 O LYS A 216 N VAL A 191 SHEET 5 AF 5 ILE A 247 THR A 251 1 O GLU A 248 N LEU A 219 SHEET 1 AG 3 PRO A 255 LEU A 260 0 SHEET 2 AG 3 LYS A 266 PHE A 270 -1 O HIS A 267 N SER A 259 SHEET 3 AG 3 THR A 275 VAL A 278 -1 O LEU A 276 N VAL A 268 SHEET 1 AH 7 ALA A 363 VAL A 366 0 SHEET 2 AH 7 ILE A 372 GLY A 376 -1 O ILE A 372 N VAL A 366 SHEET 3 AH 7 VAL A 424 LEU A 430 -1 O VAL A 427 N CYS A 375 SHEET 4 AH 7 PHE A 411 ASN A 418 -1 O VAL A 412 N LEU A 430 SHEET 5 AH 7 LYS A 388 PHE A 396 -1 O ALA A 390 N THR A 417 SHEET 6 AH 7 TYR A 476 VAL A 479 -1 O TYR A 476 N VAL A 391 SHEET 7 AH 7 GLU A 482 MET A 484 -1 O GLU A 482 N VAL A 479 SHEET 1 BA 6 LEU B 120 LEU B 124 0 SHEET 2 BA 6 VAL B 31 ASP B 35 1 O VAL B 31 N ASP B 121 SHEET 3 BA 6 LYS B 3 ILE B 10 1 O LEU B 7 N ALA B 32 SHEET 4 BA 6 VAL B 147 LEU B 158 1 O ARG B 150 N LYS B 3 SHEET 5 BA 6 VAL B 134 ARG B 138 -1 O VAL B 135 N LEU B 151 SHEET 6 BA 6 TRP B 126 SER B 131 -1 O TRP B 126 N ARG B 138 SHEET 1 BB 5 LEU B 120 LEU B 124 0 SHEET 2 BB 5 VAL B 31 ASP B 35 1 O VAL B 31 N ASP B 121 SHEET 3 BB 5 LYS B 3 ILE B 10 1 O LEU B 7 N ALA B 32 SHEET 4 BB 5 VAL B 147 LEU B 158 1 O ARG B 150 N LYS B 3 SHEET 5 BB 5 ILE B 322 ALA B 324 1 O TYR B 323 N LEU B 158 SHEET 1 BC 2 SER B 162 PRO B 164 0 SHEET 2 BC 2 ARG B 287 PRO B 289 -1 O ILE B 288 N TRP B 163 SHEET 1 BD 4 GLU B 248 THR B 251 0 SHEET 2 BD 4 LYS B 216 TYR B 221 1 O VAL B 217 N GLU B 248 SHEET 3 BD 4 ARG B 190 VAL B 194 1 O VAL B 191 N THR B 218 SHEET 4 BD 4 VAL B 280 MET B 283 1 O VAL B 280 N LEU B 192 SHEET 1 BE 3 PRO B 255 LEU B 260 0 SHEET 2 BE 3 LYS B 266 PHE B 270 -1 O HIS B 267 N SER B 259 SHEET 3 BE 3 THR B 275 VAL B 278 -1 O LEU B 276 N VAL B 268 SHEET 1 BF 7 SER B 364 VAL B 366 0 SHEET 2 BF 7 ILE B 372 GLY B 376 -1 O ILE B 372 N VAL B 366 SHEET 3 BF 7 VAL B 424 LEU B 430 -1 O VAL B 427 N CYS B 375 SHEET 4 BF 7 PHE B 411 ASN B 418 -1 O VAL B 412 N LEU B 430 SHEET 5 BF 7 LYS B 388 PHE B 396 -1 O ALA B 390 N THR B 417 SHEET 6 BF 7 TYR B 476 VAL B 479 -1 O TYR B 476 N VAL B 391 SHEET 7 BF 7 GLU B 482 MET B 484 -1 O GLU B 482 N VAL B 479 SSBOND 1 CYS A 52 CYS A 57 1555 1555 2.04 SSBOND 2 CYS B 52 CYS B 57 1555 1555 2.04 CISPEP 1 PRO A 42 PRO A 43 0 6.58 CISPEP 2 ILE A 369 PRO A 370 0 -4.17 CISPEP 3 HIS A 461 PRO A 462 0 -7.08 CISPEP 4 PRO B 42 PRO B 43 0 1.03 CISPEP 5 ILE B 369 PRO B 370 0 -3.07 CISPEP 6 HIS B 461 PRO B 462 0 -6.07 SITE 1 AC1 35 ILE A 10 GLY A 11 GLY A 13 SER A 14 SITE 2 AC1 35 GLY A 15 VAL A 34 ASP A 35 ALA A 46 SITE 3 AC1 35 ALA A 47 GLY A 50 THR A 51 CYS A 52 SITE 4 AC1 35 CYS A 57 LYS A 60 GLY A 127 ALA A 159 SITE 5 AC1 35 THR A 160 GLY A 161 ARG A 287 ARG A 290 SITE 6 AC1 35 GLY A 326 ASP A 327 MET A 333 LEU A 334 SITE 7 AC1 35 THR A 335 PRO A 336 HOH A2164 HOH A2247 SITE 8 AC1 35 HOH A2269 HOH A2373 HOH A2374 HOH A2375 SITE 9 AC1 35 HOH A2376 HOH A2377 HIS B 461 SITE 1 AC2 38 HIS A 461 HOH A2357 ILE B 10 GLY B 11 SITE 2 AC2 38 GLY B 13 SER B 14 GLY B 15 VAL B 34 SITE 3 AC2 38 ASP B 35 VAL B 36 ALA B 46 ALA B 47 SITE 4 AC2 38 GLY B 50 THR B 51 CYS B 52 CYS B 57 SITE 5 AC2 38 LYS B 60 GLY B 125 TRP B 126 GLY B 127 SITE 6 AC2 38 ALA B 159 THR B 160 GLY B 161 ARG B 287 SITE 7 AC2 38 ARG B 290 GLY B 326 ASP B 327 MET B 333 SITE 8 AC2 38 LEU B 334 THR B 335 PRO B 336 HOH B2283 SITE 9 AC2 38 HOH B2383 HOH B2384 HOH B2385 HOH B2386 SITE 10 AC2 38 HOH B2387 HOH B2388 SITE 1 AC3 3 GLU A 18 TYR A 110 HOH A2378 SITE 1 AC4 2 SER B 109 TYR B 110 SITE 1 AC5 4 SER A 470 ARG A 472 THR A 473 HOH A2368 SITE 1 AC6 3 TRP B 163 ARG B 290 ASP B 293 SITE 1 AC7 4 GLU B 139 PRO B 213 HOH B2189 HOH B2389 SITE 1 AC8 3 GLU B 18 TYR B 110 HOH B2390 SITE 1 AC9 1 SER A 109 SITE 1 BC1 5 ARG A 290 ASP A 293 HOH A2379 HOH A2380 SITE 2 BC1 5 HOH A2381 SITE 1 BC2 16 GLY B 196 GLY B 197 TYR B 221 ARG B 222 SITE 2 BC2 16 ASN B 223 ARG B 228 ASN B 254 ALA B 284 SITE 3 BC2 16 ILE B 285 GLY B 286 ARG B 287 HOH B2391 SITE 4 BC2 16 HOH B2393 HOH B2394 HOH B2395 HOH B2396 SITE 1 BC3 15 GLY A 196 GLY A 197 TYR A 221 ARG A 222 SITE 2 BC3 15 ASN A 223 ARG A 228 ASN A 254 ALA A 284 SITE 3 BC3 15 ILE A 285 GLY A 286 HOH A2382 HOH A2383 SITE 4 BC3 15 HOH A2384 HOH A2385 HOH A2387 SITE 1 BC4 9 VAL A 311 ASP A 312 ARG A 316 THR A 317 SITE 2 BC4 9 HOH A2388 HOH A2389 ASP B 312 ARG B 316 SITE 3 BC4 9 THR B 317 SITE 1 BC5 4 ARG B 189 ARG B 190 HOH B2253 HOH B2397 SITE 1 BC6 2 ARG A 189 ARG A 190 CRYST1 63.630 132.713 161.287 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015716 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007535 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006200 0.00000 MASTER 358 0 15 36 59 0 41 6 0 0 0 76 END