HEADER TOXIN 29-JAN-09 2W9U TITLE SOLUTION STRUCTURE OF JERDOSTATIN MUTANT R24K FROM TRIMERESURUS TITLE 2 JERDONII COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHORT DISINTEGRIN JERDOSTATIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 68-110; COMPND 5 SYNONYM: JERDOSTATIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRIMERESURUS JERDONII; SOURCE 3 ORGANISM_COMMON: JERDON'S PIT-VIPER; SOURCE 4 ORGANISM_TAXID: 135726; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-32A KEYWDS VENOM, TOXIN, CELL ADHESION, BLOOD COAGULATION EXPDTA SOLUTION NMR NUMMDL 42 AUTHOR R.J.CARBAJO,L.SANZ,S.MOSULEN,J.J.CALVETE,A.PINEDA-LUCENA REVDAT 4 15-JAN-20 2W9U 1 REMARK REVDAT 3 09-NOV-11 2W9U 1 JRNL REMARK VERSN REVDAT 2 18-MAY-11 2W9U 1 JRNL REMARK REVDAT 1 31-MAR-10 2W9U 0 JRNL AUTH R.J.CARBAJO,L.SANZ,S.MOSULEN,A.PEREZ,C.MARCINKIEWICZ, JRNL AUTH 2 A.PINEDA-LUCENA,J.J.CALVETE JRNL TITL NMR STRUCTURE AND DYNAMICS OF RECOMBINANT WILD-TYPE AND JRNL TITL 2 MUTATED JERDOSTATIN, A SELECTIVE INHIBITOR OF INTEGRIN JRNL TITL 3 ALPHA1 BETA1 JRNL REF PROTEINS V. 79 2530 2011 JRNL REFN ISSN 0887-3585 JRNL PMID 21656569 JRNL DOI 10.1002/PROT.23076 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS, GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2W9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-JAN-09. REMARK 100 THE DEPOSITION ID IS D_1290038663. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300.0 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 90% H2O / 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; 15N HSQC; 13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY REMARK 210 METHOD USED : CNS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 42 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST TOTAL ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING HOMONUCLEAR AND REMARK 210 HETERONUCLEAR NMR SPECTROSCOPY ON 15N-LABELLED JERDOSTATIN REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ARG 88 TO LYS REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 5 66.72 62.91 REMARK 500 1 GLN A 12 -31.59 167.75 REMARK 500 1 CYS A 13 34.58 -177.57 REMARK 500 1 LEU A 15 107.81 -46.46 REMARK 500 1 TRP A 23 -70.10 -91.06 REMARK 500 1 SER A 28 115.07 -163.78 REMARK 500 2 THR A 5 130.33 60.15 REMARK 500 2 ARG A 11 -42.91 -174.66 REMARK 500 2 LEU A 15 117.77 -39.33 REMARK 500 2 TRP A 23 -71.94 -108.53 REMARK 500 2 THR A 25 177.40 -55.22 REMARK 500 2 VAL A 27 47.35 -154.16 REMARK 500 2 SER A 28 86.63 174.44 REMARK 500 2 ARG A 35 -46.34 -131.04 REMARK 500 2 PRO A 40 171.42 -53.76 REMARK 500 2 PRO A 43 -74.24 -59.96 REMARK 500 3 MET A 2 -65.09 -166.18 REMARK 500 3 ASP A 3 134.58 63.77 REMARK 500 3 CYS A 4 118.22 61.54 REMARK 500 3 ARG A 11 -78.55 -97.79 REMARK 500 3 CYS A 13 -36.67 -179.54 REMARK 500 3 ALA A 18 153.64 -46.79 REMARK 500 3 TRP A 23 -69.03 -93.98 REMARK 500 3 THR A 25 177.51 -59.65 REMARK 500 3 VAL A 27 45.48 -153.38 REMARK 500 3 SER A 28 87.85 172.16 REMARK 500 3 PRO A 40 178.90 -52.49 REMARK 500 3 ASN A 45 -46.66 -133.50 REMARK 500 4 ASP A 3 169.24 60.39 REMARK 500 4 THR A 5 93.04 -165.48 REMARK 500 4 THR A 6 96.04 -45.26 REMARK 500 4 CYS A 13 36.95 80.13 REMARK 500 4 LYS A 14 84.75 -158.66 REMARK 500 4 LEU A 15 125.60 -18.09 REMARK 500 4 LYS A 24 66.38 -67.58 REMARK 500 4 SER A 28 173.44 177.63 REMARK 500 4 SER A 29 117.18 -178.85 REMARK 500 4 ARG A 35 -57.08 -136.16 REMARK 500 4 PRO A 40 178.05 -52.22 REMARK 500 4 ASN A 45 78.74 60.24 REMARK 500 5 ASP A 3 78.50 -103.88 REMARK 500 5 THR A 6 95.83 -45.92 REMARK 500 5 ARG A 11 -71.01 -94.56 REMARK 500 5 CYS A 13 47.98 161.16 REMARK 500 5 ALA A 18 160.12 -44.56 REMARK 500 5 TRP A 23 -73.44 -166.65 REMARK 500 5 VAL A 27 -33.42 170.15 REMARK 500 5 ARG A 35 18.80 -141.65 REMARK 500 5 CYS A 39 106.92 -50.70 REMARK 500 5 PRO A 40 166.68 -46.30 REMARK 500 REMARK 500 THIS ENTRY HAS 402 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W9O RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF JERDOSTATIN FROM TRIMERESURUS JERDONII REMARK 900 RELATED ID: 2W9V RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF JERDOSTATIN FROM TRIMERESURUS JERDONII WITH REMARK 900 END C-TERMINAL RESIDUES N45G46 DELETED REMARK 900 RELATED ID: 2W9W RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF JERDOSTATIN MUTANT R24K FROM TRIMERESURUS REMARK 900 JERDONII WITH END C- TERMINAL RESIDUES N45G46 DELETED REMARK 900 RELATED ID: 16150 RELATED DB: BMRB REMARK 999 REMARK 999 SEQUENCE REMARK 999 FIRST THREE RESIDUES (AMD) ARE A CLONING ARTIFACT DBREF 2W9U A 1 3 PDB 2W9U 2W9U 1 3 DBREF 2W9U A 4 46 UNP Q7ZZM2 DISS_TRIJE 68 110 SEQADV 2W9U LYS A 24 UNP Q7ZZM2 ARG 88 ENGINEERED MUTATION SEQRES 1 A 46 ALA MET ASP CYS THR THR GLY PRO CYS CYS ARG GLN CYS SEQRES 2 A 46 LYS LEU LYS PRO ALA GLY THR THR CYS TRP LYS THR SER SEQRES 3 A 46 VAL SER SER HIS TYR CYS THR GLY ARG SER CYS GLU CYS SEQRES 4 A 46 PRO SER TYR PRO GLY ASN GLY SSBOND 1 CYS A 4 CYS A 13 1555 1555 2.03 SSBOND 2 CYS A 9 CYS A 32 1555 1555 2.03 SSBOND 3 CYS A 10 CYS A 37 1555 1555 2.03 SSBOND 4 CYS A 22 CYS A 39 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 152 0 0 0 0 0 0 6 0 0 0 4 END