HEADER TRANSFERASE 12-NOV-08 2W3E TITLE OXIDIZED STRUCTURE OF THE FIRST GAF DOMAIN OF TITLE 2 MYCOBACTERIUM TUBERCULOSIS DOSS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TWO COMPONENT SENSOR HISTIDINE KINASE DEVS (GAF FAMILY COMPND 3 PROTEIN); COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: GAF DOMAIN, RESIDUES 63-210; COMPND 6 SYNONYM: DOSS; COMPND 7 EC: 2.7.3.-; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: D63 TO K210 OF DOSS WITH ADDITIONAL GAMDP SEQUENCE COMPND 10 AT THE N-TERMINUS DUE TO CLONING PROCEDURE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS REDOX SENSOR, MYCOBACTERIUM TUBERCULOSIS, HEME, KINASE, HYPOXIA, GAF KEYWDS 2 DOMAIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.S.KANG,H.Y.CHO,H.J.CHO REVDAT 4 13-JUL-11 2W3E 1 VERSN REVDAT 3 12-MAY-09 2W3E 1 JRNL REVDAT 2 24-MAR-09 2W3E 1 JRNL REVDAT 1 10-MAR-09 2W3E 0 JRNL AUTH H.Y.CHO,H.J.CHO,Y.M.KIM,J.I.OH,B.S.KANG JRNL TITL STRUCTURAL INSIGHT INTO THE HEME-BASED REDOX SENSING BY JRNL TITL 2 DOSS FROM MYCOBACTERIUM TUBERCULOSIS. JRNL REF J.BIOL.CHEM. V. 284 13057 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19276084 JRNL DOI 10.1074/JBC.M808905200 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NONE REMARK 3 COMPLETENESS FOR RANGE (%) : 96.80 REMARK 3 NUMBER OF REFLECTIONS : 39191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.20132 REMARK 3 R VALUE (WORKING SET) : 0.19957 REMARK 3 FREE R VALUE : 0.23404 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 FREE R VALUE TEST SET COUNT : 2088 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.599 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.640 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2346 REMARK 3 BIN R VALUE (WORKING SET) : 0.267 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.349 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2278 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 87 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.416 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02 REMARK 3 B22 (A**2) : 0.02 REMARK 3 B33 (A**2) : 0.00 REMARK 3 B12 (A**2) : 0.00 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.099 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.069 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.506 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2437 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3362 ; 1.427 ; 2.081 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 305 ; 5.769 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;34.850 ;22.925 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 363 ;12.939 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;18.464 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 369 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1901 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1180 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1688 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 202 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 45 ; 0.180 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.135 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1511 ; 1.729 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2399 ; 2.584 ; 5.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1022 ; 3.894 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 952 ; 5.596 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 58 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9515 26.3120 17.0825 REMARK 3 T TENSOR REMARK 3 T11: -0.0683 T22: -0.0322 REMARK 3 T33: -0.0359 T12: 0.0063 REMARK 3 T13: -0.0168 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 0.6059 L22: 2.2752 REMARK 3 L33: 1.7978 L12: -0.1398 REMARK 3 L13: 0.0310 L23: -1.2024 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.0281 S13: 0.0122 REMARK 3 S21: -0.0917 S22: -0.0269 S23: -0.0754 REMARK 3 S31: 0.1920 S32: 0.0561 S33: 0.0071 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 63 B 207 REMARK 3 ORIGIN FOR THE GROUP (A): 4.4707 48.8054 -1.2800 REMARK 3 T TENSOR REMARK 3 T11: -0.1178 T22: -0.0187 REMARK 3 T33: -0.0166 T12: -0.0108 REMARK 3 T13: 0.0008 T23: -0.0071 REMARK 3 L TENSOR REMARK 3 L11: 0.3884 L22: 1.3192 REMARK 3 L33: 3.5718 L12: -0.0241 REMARK 3 L13: 0.0271 L23: -0.3558 REMARK 3 S TENSOR REMARK 3 S11: -0.0293 S12: -0.0285 S13: 0.0327 REMARK 3 S21: -0.1046 S22: 0.0226 S23: -0.0280 REMARK 3 S31: -0.1866 S32: -0.0067 S33: 0.0066 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2W3E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 12-NOV-08. REMARK 100 THE PDBE ID CODE IS EBI-38079. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL2000 REMARK 200 DATA SCALING SOFTWARE : HKL2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41345 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.60 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 6.7 REMARK 200 R MERGE (I) : 0.07 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000 AND 0.2 M CALCIUM REMARK 280 CHLORIDE IN TRIS-HCL, PH 7.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.32100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.43250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.32100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.43250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 1670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 206 REMARK 465 GLN A 207 REMARK 465 GLN A 208 REMARK 465 ALA A 209 REMARK 465 LYS A 210 REMARK 465 GLY B 58 REMARK 465 ALA B 59 REMARK 465 MET B 60 REMARK 465 ASP B 61 REMARK 465 PRO B 62 REMARK 465 GLN B 208 REMARK 465 ALA B 209 REMARK 465 LYS B 210 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 91 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 206 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLN B 207 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 -152.09 -91.02 REMARK 500 PRO A 128 61.87 -67.39 REMARK 500 TYR A 148 -10.22 80.57 REMARK 500 ARG A 153 -70.39 -115.05 REMARK 500 ARG A 163 -125.61 56.17 REMARK 500 PRO B 128 92.32 -68.79 REMARK 500 TYR B 148 -15.49 74.86 REMARK 500 ARG B 153 -75.46 -121.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 149 NE2 REMARK 620 2 HEM A 500 NA 94.5 REMARK 620 3 HEM A 500 NB 93.8 90.5 REMARK 620 4 HEM A 500 NC 91.0 174.5 89.8 REMARK 620 5 HEM A 500 ND 90.1 89.1 176.1 90.1 REMARK 620 6 HOH A2135 O 176.0 82.4 88.7 92.1 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 502 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 149 NE2 REMARK 620 2 HEM B 502 NA 94.7 REMARK 620 3 HEM B 502 NB 90.5 92.9 REMARK 620 4 HEM B 502 ND 92.5 87.3 177.0 REMARK 620 5 HOH B2092 O 177.3 86.4 87.0 90.0 REMARK 620 6 HEM B 502 NC 87.9 177.2 88.3 91.3 91.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1206 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2029 O REMARK 620 2 HOH A2119 O 87.8 REMARK 620 3 ASP A 80 OD1 71.9 146.7 REMARK 620 4 ASP A 80 OD2 103.1 164.2 49.1 REMARK 620 5 ASP A 183 OD1 141.5 60.1 123.4 113.1 REMARK 620 6 ASP A 183 OD2 129.5 101.9 73.8 80.2 49.6 REMARK 620 7 HOH A2026 O 133.5 93.7 119.5 70.5 73.7 95.6 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2W3H RELATED DB: PDB REMARK 900 CYANIDE BOUND STRUCTURE OF THE FIRST GAF REMARK 900 DOMAIN OF MYCOBACTERIUM TUBERCULOSIS DOSS REMARK 900 RELATED ID: 2W3F RELATED DB: PDB REMARK 900 REDUCED STRUCTURE OF THE FIRST GAF DOMAIN REMARK 900 OF MYCOBACTERIUM TUBERCULOSIS DOSS REMARK 900 RELATED ID: 2W3D RELATED DB: PDB REMARK 900 STRUCTURE OF THE FIRST GAF DOMAIN REMARK 900 OF MYCOBACTERIUM TUBERCULOSIS DOSS REMARK 900 RELATED ID: 2W3G RELATED DB: PDB REMARK 900 AIR-OXIDIZED STRUCTURE OF THE FIRST GAF REMARK 900 DOMAIN OF MYCOBACTERIUM TUBERCULOSIS DOSS DBREF 2W3E A 58 62 PDB 2W3E 2W3E 58 62 DBREF 2W3E A 63 210 UNP P95194 P95194_MYCTU 63 210 DBREF 2W3E B 58 62 PDB 2W3E 2W3E 58 62 DBREF 2W3E B 63 210 UNP P95194 P95194_MYCTU 63 210 SEQRES 1 A 153 GLY ALA MET ASP PRO ASP LEU GLU ALA THR LEU ARG ALA SEQRES 2 A 153 ILE VAL HIS SER ALA THR SER LEU VAL ASP ALA ARG TYR SEQRES 3 A 153 GLY ALA MET GLU VAL HIS ASP ARG GLN HIS ARG VAL LEU SEQRES 4 A 153 HIS PHE VAL TYR GLU GLY ILE ASP GLU GLU THR VAL ARG SEQRES 5 A 153 ARG ILE GLY HIS LEU PRO LYS GLY LEU GLY VAL ILE GLY SEQRES 6 A 153 LEU LEU ILE GLU ASP PRO LYS PRO LEU ARG LEU ASP ASP SEQRES 7 A 153 VAL SER ALA HIS PRO ALA SER ILE GLY PHE PRO PRO TYR SEQRES 8 A 153 HIS PRO PRO MET ARG THR PHE LEU GLY VAL PRO VAL ARG SEQRES 9 A 153 VAL ARG ASP GLU SER PHE GLY THR LEU TYR LEU THR ASP SEQRES 10 A 153 LYS THR ASN GLY GLN PRO PHE SER ASP ASP ASP GLU VAL SEQRES 11 A 153 LEU VAL GLN ALA LEU ALA ALA ALA ALA GLY ILE ALA VAL SEQRES 12 A 153 ALA ASN ALA ARG LEU TYR GLN GLN ALA LYS SEQRES 1 B 153 GLY ALA MET ASP PRO ASP LEU GLU ALA THR LEU ARG ALA SEQRES 2 B 153 ILE VAL HIS SER ALA THR SER LEU VAL ASP ALA ARG TYR SEQRES 3 B 153 GLY ALA MET GLU VAL HIS ASP ARG GLN HIS ARG VAL LEU SEQRES 4 B 153 HIS PHE VAL TYR GLU GLY ILE ASP GLU GLU THR VAL ARG SEQRES 5 B 153 ARG ILE GLY HIS LEU PRO LYS GLY LEU GLY VAL ILE GLY SEQRES 6 B 153 LEU LEU ILE GLU ASP PRO LYS PRO LEU ARG LEU ASP ASP SEQRES 7 B 153 VAL SER ALA HIS PRO ALA SER ILE GLY PHE PRO PRO TYR SEQRES 8 B 153 HIS PRO PRO MET ARG THR PHE LEU GLY VAL PRO VAL ARG SEQRES 9 B 153 VAL ARG ASP GLU SER PHE GLY THR LEU TYR LEU THR ASP SEQRES 10 B 153 LYS THR ASN GLY GLN PRO PHE SER ASP ASP ASP GLU VAL SEQRES 11 B 153 LEU VAL GLN ALA LEU ALA ALA ALA ALA GLY ILE ALA VAL SEQRES 12 B 153 ALA ASN ALA ARG LEU TYR GLN GLN ALA LYS HET HEM A 500 43 HET CA A1206 1 HET HEM B 502 43 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM CA CALCIUM ION FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 CA CA 2+ FORMUL 5 HOH *260(H2 O) HELIX 1 1 ASP A 61 VAL A 79 1 19 HELIX 2 2 ARG A 91 HIS A 93 5 3 HELIX 3 3 ASP A 104 GLY A 112 1 9 HELIX 4 4 GLY A 119 ASP A 127 1 9 HELIX 5 5 ASP A 135 HIS A 139 5 5 HELIX 6 6 SER A 182 ALA A 203 1 22 HELIX 7 7 ASP B 63 ASP B 80 1 18 HELIX 8 8 ASP B 104 GLY B 112 1 9 HELIX 9 9 LEU B 118 ASP B 127 1 10 HELIX 10 10 ASP B 135 HIS B 139 5 5 HELIX 11 11 ASN B 177 GLN B 179 5 3 HELIX 12 12 SER B 182 GLN B 207 1 26 SHEET 1 AA 5 VAL A 95 GLU A 101 0 SHEET 2 AA 5 ALA A 81 HIS A 89 -1 O GLY A 84 N GLU A 101 SHEET 3 AA 5 GLU A 165 LYS A 175 -1 O PHE A 167 N HIS A 89 SHEET 4 AA 5 PHE A 155 VAL A 162 -1 O LEU A 156 N LEU A 172 SHEET 5 AA 5 LEU A 131 LEU A 133 -1 O LEU A 131 N GLY A 157 SHEET 1 BA 5 VAL B 95 GLU B 101 0 SHEET 2 BA 5 ALA B 81 HIS B 89 -1 O GLY B 84 N GLU B 101 SHEET 3 BA 5 GLU B 165 LYS B 175 -1 O PHE B 167 N HIS B 89 SHEET 4 BA 5 PHE B 155 VAL B 162 -1 O LEU B 156 N LEU B 172 SHEET 5 BA 5 LEU B 131 LEU B 133 -1 O LEU B 131 N GLY B 157 LINK FE HEM A 500 NE2 HIS A 149 1555 1555 2.16 LINK FE HEM A 500 O HOH A2135 1555 1555 2.21 LINK CA CA A1206 O HOH A2026 1555 4555 2.25 LINK CA CA A1206 OD2 ASP A 183 1555 1555 2.33 LINK CA CA A1206 O HOH A2029 1555 4555 2.23 LINK CA CA A1206 O HOH A2119 1555 1555 2.07 LINK CA CA A1206 OD1 ASP A 80 1555 4555 2.49 LINK CA CA A1206 OD2 ASP A 80 1555 4555 2.75 LINK CA CA A1206 OD1 ASP A 183 1555 1555 2.79 LINK FE HEM B 502 O HOH B2092 1555 1555 2.26 LINK FE HEM B 502 NE2 HIS B 149 1555 1555 2.14 SITE 1 AC1 24 TYR A 83 GLY A 84 PHE A 98 GLU A 101 SITE 2 AC1 24 ILE A 103 ILE A 111 HIS A 113 PRO A 115 SITE 3 AC1 24 LYS A 116 GLY A 117 LEU A 118 GLY A 119 SITE 4 AC1 24 SER A 142 ILE A 143 GLY A 144 PHE A 145 SITE 5 AC1 24 PRO A 146 HIS A 149 MET A 152 TYR A 171 SITE 6 AC1 24 THR A 173 HOH A2134 HOH A2135 HOH A2136 SITE 1 AC2 5 ASP A 80 ASP A 183 HOH A2026 HOH A2029 SITE 2 AC2 5 HOH A2119 SITE 1 AC3 23 GLY B 84 PHE B 98 GLU B 101 ILE B 103 SITE 2 AC3 23 HIS B 113 PRO B 115 LYS B 116 GLY B 117 SITE 3 AC3 23 LEU B 118 GLY B 119 SER B 142 ILE B 143 SITE 4 AC3 23 GLY B 144 PHE B 145 PRO B 146 HIS B 149 SITE 5 AC3 23 MET B 152 TYR B 171 THR B 173 HOH B2020 SITE 6 AC3 23 HOH B2092 HOH B2123 HOH B2124 CRYST1 36.000 86.865 100.642 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027778 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011512 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009936 0.00000 MASTER 389 0 3 12 10 0 14 6 0 0 0 24 END