HEADER TRANSFERASE 08-OCT-08 2W0S TITLE CRYSTAL STRUCTURE OF VACCINIA VIRUS THYMIDYLATE KINASE TITLE 2 BOUND TO BRIVUDIN-5'-MONOPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS COPENHAGEN; SOURCE 3 ORGANISM_TAXID: 10249; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) ROSETTA PLYSS; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS NUCLEOTIDE BIOSYNTHESIS, ATP-BINDING, NUCLEOTIDE-BINDING, KEYWDS 2 KINASE, POXVIRUS, TMP KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.CAILLAT,D.TOPALIS,L.A.AGROFOGLIO,S.POCHET,J.BALZARINI, AUTHOR 2 D.DEVILLE-BONNE,P.MEYER REVDAT 5 20-NOV-13 2W0S 1 JRNL REMARK VERSN REVDAT 4 16-JUN-09 2W0S 1 REMARK REVDAT 3 24-FEB-09 2W0S 1 VERSN REVDAT 2 18-NOV-08 2W0S 1 JRNL REVDAT 1 21-OCT-08 2W0S 0 JRNL AUTH C.CAILLAT,D.TOPALIS,L.A.AGROFOGLIO,S.POCHET, JRNL AUTH 2 J.BALZARINI,D.DEVILLE-BONNE,P.MEYER JRNL TITL CRYSTAL STRUCTURE OF POXVIRUS THYMIDYLATE KINASE: JRNL TITL 2 AN UNEXPECTED DIMERIZATION HAS IMPLICATIONS FOR JRNL TITL 3 ANTIVIRAL THERAPY JRNL REF PROC.NATL.ACAD.SCI.USA V. 105 16900 2008 JRNL REFN ISSN 0027-8424 JRNL PMID 18971333 JRNL DOI 10.1073/PNAS.0804525105 REMARK 2 REMARK 2 RESOLUTION. 2.92 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.918 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.852 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.45 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.54 REMARK 3 NUMBER OF REFLECTIONS : 18237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.2196 REMARK 3 R VALUE (WORKING SET) : 0.2124 REMARK 3 FREE R VALUE : 0.2828 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.11 REMARK 3 FREE R VALUE TEST SET COUNT : 1843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.8547 - 6.8468 0.99 1251 142 0.1780 0.2295 REMARK 3 2 6.8468 - 5.4402 1.00 1276 144 0.1908 0.2530 REMARK 3 3 5.4402 - 4.7541 1.00 1269 146 0.1612 0.2219 REMARK 3 4 4.7541 - 4.3202 1.00 1257 144 0.1577 0.2449 REMARK 3 5 4.3202 - 4.0109 1.00 1256 142 0.1871 0.2277 REMARK 3 6 4.0109 - 3.7747 1.00 1267 141 0.2107 0.2828 REMARK 3 7 3.7747 - 3.5858 1.00 1271 143 0.2104 0.3475 REMARK 3 8 3.5858 - 3.4298 1.00 1255 141 0.2349 0.3458 REMARK 3 9 3.4298 - 3.2979 1.00 1286 144 0.2418 0.3516 REMARK 3 10 3.2979 - 3.1842 1.00 1269 143 0.2415 0.3369 REMARK 3 11 3.1842 - 3.0846 1.00 1249 136 0.2572 0.2850 REMARK 3 12 3.0846 - 2.9965 1.00 1270 144 0.2773 0.3240 REMARK 3 13 2.9965 - 2.9177 0.96 1218 133 0.3070 0.3897 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.335 REMARK 3 B_SOL : 24.359 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.44 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.23 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.6175 REMARK 3 B22 (A**2) : 19.3659 REMARK 3 B33 (A**2) : -11.7485 REMARK 3 B12 (A**2) : 0.0000 REMARK 3 B13 (A**2) : -0.0000 REMARK 3 B23 (A**2) : 0.0000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3388 REMARK 3 ANGLE : 1.361 4581 REMARK 3 CHIRALITY : 0.082 512 REMARK 3 PLANARITY : 0.005 574 REMARK 3 DIHEDRAL : 21.782 1253 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 2:60 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 2:60 ) REMARK 3 ATOM PAIRS NUMBER : 466 REMARK 3 RMSD : 0.052 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: CHAIN A AND (RESSEQ 64:204 ) REMARK 3 SELECTION : CHAIN B AND (RESSEQ 64:204 ) REMARK 3 ATOM PAIRS NUMBER : 1132 REMARK 3 RMSD : 0.052 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2W0S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-OCT-08. REMARK 100 THE PDBE ID CODE IS EBI-37704. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9198 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69977 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.92 REMARK 200 RESOLUTION RANGE LOW (A) : 49.75 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7 REMARK 200 R MERGE (I) : 0.12 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.90 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.92 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 7 REMARK 200 R MERGE FOR SHELL (I) : 0.52 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2V54 REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.5 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.2 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24% PEG 2000 MME, 100 MM REMARK 280 TRIS-HCL PH 8.5, 5 MM MGCL2, 28 MM BVDU REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.18500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.52000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.17500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.52000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.18500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.17500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 DETAILS: THIS ENTRY CONTAINS A SECONDARY BVP (BVP 1209) REMARK 300 BINDING SITE THAT IS PRESENT AT THE DIMERIC INTERFACE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.22 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 -29.18500 REMARK 350 BIOMT2 1 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 -47.52000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17710 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.05 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -29.18500 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 47.52000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 31 CB CG OD1 ND2 REMARK 470 LYS A 133 CB CG CD CE NZ REMARK 470 ASN B 31 CB CG OD1 ND2 REMARK 470 LYS B 133 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 REMARK 500 O SER A 114 ND2 ASN B 60 2455 2.01 REMARK 500 O SER A 117 OD1 ASN B 60 2455 1.99 REMARK 500 OD1 ASN B 60 O SER A 117 2454 1.99 REMARK 500 ND2 ASN B 60 O SER A 114 2454 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 43 -172.15 -66.91 REMARK 500 LYS A 57 144.23 -178.19 REMARK 500 ARG A 93 149.29 60.00 REMARK 500 TYR A 94 -156.91 -160.52 REMARK 500 LYS A 133 6.97 -65.02 REMARK 500 THR B 43 -174.48 -64.66 REMARK 500 LYS B 57 143.67 -179.49 REMARK 500 ARG B 93 147.30 63.35 REMARK 500 TYR B 94 -156.02 -159.66 REMARK 500 LYS B 133 6.53 -64.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1206 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 145 OE2 REMARK 620 2 ASP A 13 OD1 81.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1206 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 13 OD1 REMARK 620 2 GLU B 145 OE2 76.1 REMARK 620 3 BVP B1207 O3P 85.5 161.5 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B1206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BVP A1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BVP B1207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BVP B1209 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V54 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VACCINIA VIRUS REMARK 900 THYMIDYLATE KINASE BOUND TO TDP DBREF 2W0S A 1 204 UNP P68693 KTHY_VACCC 1 204 DBREF 2W0S B 1 204 UNP P68693 KTHY_VACCC 1 204 SEQRES 1 A 204 MET SER ARG GLY ALA LEU ILE VAL PHE GLU GLY LEU ASP SEQRES 2 A 204 LYS SER GLY LYS THR THR GLN CYS MET ASN ILE MET GLU SEQRES 3 A 204 SER ILE PRO ALA ASN THR ILE LYS TYR LEU ASN PHE PRO SEQRES 4 A 204 GLN ARG SER THR VAL THR GLY LYS MET ILE ASP ASP TYR SEQRES 5 A 204 LEU THR ARG LYS LYS THR TYR ASN ASP HIS ILE VAL ASN SEQRES 6 A 204 LEU LEU PHE CYS ALA ASN ARG TRP GLU PHE ALA SER PHE SEQRES 7 A 204 ILE GLN GLU GLN LEU GLU GLN GLY ILE THR LEU ILE VAL SEQRES 8 A 204 ASP ARG TYR ALA PHE SER GLY VAL ALA TYR ALA ALA ALA SEQRES 9 A 204 LYS GLY ALA SER MET THR LEU SER LYS SER TYR GLU SER SEQRES 10 A 204 GLY LEU PRO LYS PRO ASP LEU VAL ILE PHE LEU GLU SER SEQRES 11 A 204 GLY SER LYS GLU ILE ASN ARG ASN VAL GLY GLU GLU ILE SEQRES 12 A 204 TYR GLU ASP VAL THR PHE GLN GLN LYS VAL LEU GLN GLU SEQRES 13 A 204 TYR LYS LYS MET ILE GLU GLU GLY ASP ILE HIS TRP GLN SEQRES 14 A 204 ILE ILE SER SER GLU PHE GLU GLU ASP VAL LYS LYS GLU SEQRES 15 A 204 LEU ILE LYS ASN ILE VAL ILE GLU ALA ILE HIS THR VAL SEQRES 16 A 204 THR GLY PRO VAL GLY GLN LEU TRP MET SEQRES 1 B 204 MET SER ARG GLY ALA LEU ILE VAL PHE GLU GLY LEU ASP SEQRES 2 B 204 LYS SER GLY LYS THR THR GLN CYS MET ASN ILE MET GLU SEQRES 3 B 204 SER ILE PRO ALA ASN THR ILE LYS TYR LEU ASN PHE PRO SEQRES 4 B 204 GLN ARG SER THR VAL THR GLY LYS MET ILE ASP ASP TYR SEQRES 5 B 204 LEU THR ARG LYS LYS THR TYR ASN ASP HIS ILE VAL ASN SEQRES 6 B 204 LEU LEU PHE CYS ALA ASN ARG TRP GLU PHE ALA SER PHE SEQRES 7 B 204 ILE GLN GLU GLN LEU GLU GLN GLY ILE THR LEU ILE VAL SEQRES 8 B 204 ASP ARG TYR ALA PHE SER GLY VAL ALA TYR ALA ALA ALA SEQRES 9 B 204 LYS GLY ALA SER MET THR LEU SER LYS SER TYR GLU SER SEQRES 10 B 204 GLY LEU PRO LYS PRO ASP LEU VAL ILE PHE LEU GLU SER SEQRES 11 B 204 GLY SER LYS GLU ILE ASN ARG ASN VAL GLY GLU GLU ILE SEQRES 12 B 204 TYR GLU ASP VAL THR PHE GLN GLN LYS VAL LEU GLN GLU SEQRES 13 B 204 TYR LYS LYS MET ILE GLU GLU GLY ASP ILE HIS TRP GLN SEQRES 14 B 204 ILE ILE SER SER GLU PHE GLU GLU ASP VAL LYS LYS GLU SEQRES 15 B 204 LEU ILE LYS ASN ILE VAL ILE GLU ALA ILE HIS THR VAL SEQRES 16 B 204 THR GLY PRO VAL GLY GLN LEU TRP MET HET MG B1205 1 HET MG A1205 1 HET MG A1206 1 HET MG B1206 1 HET BVP A1207 23 HET BVP B1207 23 HET SO4 A1208 5 HET SO4 B1208 5 HET BVP B1209 23 HETNAM BVP (E)-5-(2-BROMOVINYL)-2'-DEOXYURIDINE-5'- HETNAM 2 BVP MONOPHOSPHATE HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION FORMUL 3 BVP 3(C11 H14 BR N2 O8 P) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 MG 4(MG 2+) FORMUL 6 HOH *6(H2 O1) HELIX 1 1 GLY A 16 ILE A 28 1 13 HELIX 2 2 THR A 43 THR A 54 1 12 HELIX 3 3 ASN A 60 GLU A 74 1 15 HELIX 4 4 PHE A 75 GLN A 85 1 11 HELIX 5 5 TYR A 94 LYS A 105 1 12 HELIX 6 6 SER A 108 SER A 117 1 10 HELIX 7 7 GLY A 131 ASN A 136 1 6 HELIX 8 8 ASP A 146 GLU A 162 1 17 HELIX 9 9 GLU A 176 THR A 194 1 19 HELIX 10 10 GLY B 16 ILE B 28 1 13 HELIX 11 11 THR B 43 THR B 54 1 12 HELIX 12 12 ASN B 60 GLU B 74 1 15 HELIX 13 13 PHE B 75 GLN B 85 1 11 HELIX 14 14 TYR B 94 LYS B 105 1 12 HELIX 15 15 SER B 108 SER B 117 1 10 HELIX 16 16 GLY B 131 ASN B 136 1 6 HELIX 17 17 ASP B 146 GLU B 163 1 18 HELIX 18 18 GLU B 176 THR B 194 1 19 SHEET 1 AA 5 ILE A 33 ASN A 37 0 SHEET 2 AA 5 THR A 88 ASP A 92 1 O THR A 88 N LYS A 34 SHEET 3 AA 5 LEU A 6 GLY A 11 1 O ILE A 7 N VAL A 91 SHEET 4 AA 5 LEU A 124 LEU A 128 1 O LEU A 124 N VAL A 8 SHEET 5 AA 5 TRP A 168 ILE A 171 1 O GLN A 169 N PHE A 127 SHEET 1 AB 2 PRO A 120 LYS A 121 0 SHEET 2 AB 2 GLY A 200 GLN A 201 -1 O GLY A 200 N LYS A 121 SHEET 1 BA 5 ILE B 33 ASN B 37 0 SHEET 2 BA 5 THR B 88 ASP B 92 1 O THR B 88 N LYS B 34 SHEET 3 BA 5 LEU B 6 GLY B 11 1 O ILE B 7 N VAL B 91 SHEET 4 BA 5 LEU B 124 LEU B 128 1 O LEU B 124 N VAL B 8 SHEET 5 BA 5 TRP B 168 ILE B 171 1 O GLN B 169 N PHE B 127 SHEET 1 BB 2 PRO B 120 LYS B 121 0 SHEET 2 BB 2 GLY B 200 GLN B 201 -1 O GLY B 200 N LYS B 121 LINK MG MG A1206 OE2 GLU A 145 1555 1555 2.53 LINK MG MG A1206 OD1 ASP A 13 1555 1555 2.43 LINK MG MG B1205 OD2 ASP B 92 1555 1555 2.66 LINK MG MG B1206 OE2 GLU B 145 1555 1555 2.90 LINK MG MG B1206 O3P BVP B1207 1555 1555 2.55 LINK MG MG B1206 OD1 ASP B 13 1555 1555 2.42 CISPEP 1 PHE A 38 PRO A 39 0 3.18 CISPEP 2 PHE B 38 PRO B 39 0 4.58 SITE 1 AC1 4 THR B 18 ASN B 37 ASP B 92 BVP B1207 SITE 1 AC2 4 THR A 18 ASN A 37 ASP A 92 BVP A1207 SITE 1 AC3 4 ASP A 13 GLU A 142 GLU A 145 BVP A1207 SITE 1 AC4 4 ASP B 13 GLU B 142 GLU B 145 BVP B1207 SITE 1 AC5 14 ASP A 13 PHE A 38 ARG A 41 VAL A 64 SITE 2 AC5 14 ASN A 65 PHE A 68 ARG A 72 ARG A 93 SITE 3 AC5 14 GLY A 98 TYR A 101 LYS A 105 TYR A 144 SITE 4 AC5 14 MG A1205 MG A1206 SITE 1 AC6 14 ASP B 13 PHE B 38 ARG B 41 ASN B 65 SITE 2 AC6 14 PHE B 68 ARG B 72 ARG B 93 GLY B 98 SITE 3 AC6 14 TYR B 101 ALA B 102 LYS B 105 TYR B 144 SITE 4 AC6 14 MG B1205 MG B1206 SITE 1 AC7 5 LYS A 14 SER A 15 GLY A 16 LYS A 17 SITE 2 AC7 5 THR A 18 SITE 1 AC8 5 LYS B 14 SER B 15 GLY B 16 LYS B 17 SITE 2 AC8 5 THR B 18 SITE 1 AC9 4 ASN A 60 HIS A 62 ILE A 63 TRP B 73 CRYST1 58.370 78.350 95.040 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017132 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010522 0.00000 MASTER 368 0 9 18 14 0 17 6 0 0 0 32 END