HEADER LIGASE 04-MAR-08 2VPS TITLE STRUCTURE OF THE BIFUNCTIONAL LEISHMANIA MAJOR TITLE 2 TRYPANOTHIONE SYNTHETASE-AMIDASE CAVEAT 2VPS THR A 281 CBETA WRONG HAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRYPANOTHIONE SYNTHETASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.3.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEISHMANIA MAJOR; SOURCE 3 ORGANISM_TAXID: 5664; SOURCE 4 STRAIN: FRIEDLIN; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET15B-TEV KEYWDS LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR P.K.FYFE,S.L.OZA,A.H.FAIRLAMB,W.N.HUNTER REVDAT 4 13-JUL-11 2VPS 1 VERSN REVDAT 3 24-FEB-09 2VPS 1 VERSN REVDAT 2 01-JUL-08 2VPS 1 JRNL REMARK REVDAT 1 06-MAY-08 2VPS 0 JRNL AUTH P.K.FYFE,S.L.OZA,A.H.FAIRLAMB,W.N.HUNTER JRNL TITL LEISHMANIA TRYPANOTHIONE SYNTHETASE-AMIDASE STRUCTURE JRNL TITL 2 REVEALS A BASIS FOR REGULATION OF CONFLICTING SYNTHETIC AND JRNL TITL 3 HYDROLYTIC ACTIVITIES. JRNL REF J.BIOL.CHEM. V. 283 17672 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18420578 JRNL DOI 10.1074/JBC.M801850200 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 25883 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1363 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1793 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3250 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.4140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4887 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 45 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.65 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.92000 REMARK 3 B22 (A**2) : -2.51000 REMARK 3 B33 (A**2) : -0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.514 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.306 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.223 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 22.973 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.934 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5024 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3431 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6816 ; 1.464 ; 1.935 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8295 ; 0.902 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 599 ; 9.194 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 260 ;36.603 ;23.923 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 817 ;18.033 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 32 ;17.742 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 705 ; 0.170 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5639 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1084 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1023 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3510 ; 0.193 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2411 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2622 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 108 ; 0.156 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 13 ; 0.212 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 35 ; 0.298 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.177 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3875 ; 0.719 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4834 ; 0.847 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2434 ; 1.161 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1982 ; 1.740 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 214 REMARK 3 ORIGIN FOR THE GROUP (A): -4.6320 23.5710 7.7710 REMARK 3 T TENSOR REMARK 3 T11: -0.2175 T22: -0.1011 REMARK 3 T33: -0.0610 T12: 0.0616 REMARK 3 T13: 0.0428 T23: 0.1341 REMARK 3 L TENSOR REMARK 3 L11: 0.9899 L22: 1.2474 REMARK 3 L33: 1.9053 L12: 0.2272 REMARK 3 L13: 0.4729 L23: -0.6568 REMARK 3 S TENSOR REMARK 3 S11: -0.0532 S12: 0.2292 S13: 0.3025 REMARK 3 S21: 0.0895 S22: -0.0086 S23: -0.0290 REMARK 3 S31: -0.1122 S32: 0.0127 S33: 0.0618 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 215 A 586 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8220 3.8710 36.3630 REMARK 3 T TENSOR REMARK 3 T11: -0.0691 T22: -0.1625 REMARK 3 T33: -0.1361 T12: 0.0700 REMARK 3 T13: -0.0552 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.1610 L22: 4.2020 REMARK 3 L33: 1.6972 L12: 0.7517 REMARK 3 L13: 0.6223 L23: 0.9161 REMARK 3 S TENSOR REMARK 3 S11: 0.0460 S12: 0.0557 S13: -0.1839 REMARK 3 S21: 0.0475 S22: 0.1126 S23: -0.5849 REMARK 3 S31: 0.1229 S32: 0.2941 S33: -0.1586 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 587 A 652 REMARK 3 ORIGIN FOR THE GROUP (A): 2.4320 -6.4700 23.5140 REMARK 3 T TENSOR REMARK 3 T11: 0.1102 T22: -0.0974 REMARK 3 T33: -0.2135 T12: 0.0381 REMARK 3 T13: 0.0013 T23: -0.0194 REMARK 3 L TENSOR REMARK 3 L11: 2.6233 L22: 7.8585 REMARK 3 L33: 1.3819 L12: -0.1416 REMARK 3 L13: -0.7884 L23: 0.2833 REMARK 3 S TENSOR REMARK 3 S11: 0.0407 S12: 0.0780 S13: 0.0101 REMARK 3 S21: -0.7246 S22: 0.0060 S23: -0.6431 REMARK 3 S31: 0.2576 S32: 0.2736 S33: -0.0466 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2VPS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-MAR-08. REMARK 100 THE PDBE ID CODE IS EBI-35311. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-SEP-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97897 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 96640 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.75 REMARK 200 RESOLUTION RANGE LOW (A) : 20.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 200 DATA REDUNDANCY : 3.5 REMARK 200 R MERGE (I) : 0.09 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.70 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.2 REMARK 200 R MERGE FOR SHELL (I) : 0.46 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2VOB REMARK 200 REMARK 200 REMARK: SEARCH MODEL WAS MONOMER A SELECTED FROM PDB ENTRY REMARK 200 2VOB REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.4 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 1/2-X,-Y,1/2+Z REMARK 290 3555 -X,1/2+Y,1/2-Z REMARK 290 4555 1/2+X,1/2-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.52500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.17000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.80000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 84.17000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.52500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.80000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET A 251 REMARK 465 ASP A 252 REMARK 465 VAL A 253 REMARK 465 SER A 254 REMARK 465 ARG A 255 REMARK 465 THR A 256 REMARK 465 ARG A 257 REMARK 465 LEU A 258 REMARK 465 GLU A 259 REMARK 465 GLU A 260 REMARK 465 LYS A 261 REMARK 465 GLY A 552 REMARK 465 ARG A 553 REMARK 465 VAL A 554 REMARK 465 GLY A 555 REMARK 465 SER A 556 REMARK 465 ASN A 557 REMARK 465 VAL A 558 REMARK 465 ILE A 559 REMARK 465 ILE A 560 REMARK 465 THR A 561 REMARK 465 SER A 562 REMARK 465 GLY A 563 REMARK 465 ASP A 564 REMARK 465 GLY A 565 REMARK 465 VAL A 566 REMARK 465 VAL A 567 REMARK 465 HIS A 568 REMARK 465 ALA A 569 REMARK 465 GLU A 570 REMARK 465 SER A 571 REMARK 465 GLY A 572 REMARK 465 GLY A 573 REMARK 465 LYS A 574 REMARK 465 TYR A 575 REMARK 465 GLY A 576 REMARK 465 LYS A 577 REMARK 465 ARG A 578 REMARK 465 ASP A 634 REMARK 465 LYS A 635 REMARK 465 LEU A 636 REMARK 465 PRO A 637 REMARK 465 HIS A 638 REMARK 465 PRO A 639 REMARK 465 VAL A 640 REMARK 465 THR A 641 REMARK 465 LEU A 642 REMARK 465 LYS A 643 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 -19.48 68.67 REMARK 500 LYS A 36 -60.15 69.79 REMARK 500 ASN A 50 16.00 56.31 REMARK 500 VAL A 90 -167.70 -108.20 REMARK 500 THR A 96 -8.27 60.47 REMARK 500 THR A 108 -165.73 -111.45 REMARK 500 SER A 156 -161.64 -166.28 REMARK 500 GLU A 181 53.76 -159.62 REMARK 500 SER A 209 -2.22 -58.61 REMARK 500 PHE A 249 72.89 -114.35 REMARK 500 THR A 352 -5.75 106.85 REMARK 500 LEU A 358 -68.66 -151.91 REMARK 500 LEU A 431 -160.69 56.63 REMARK 500 ASP A 439 -17.05 -46.12 REMARK 500 ASP A 445 -169.80 -105.63 REMARK 500 ARG A 452 -32.10 -136.91 REMARK 500 TRP A 458 129.41 -35.52 REMARK 500 GLU A 473 -31.57 -30.36 REMARK 500 PHE A 502 66.68 -115.06 REMARK 500 ASP A 592 28.77 45.99 REMARK 500 ASP A 593 3.74 82.43 REMARK 500 SER A 617 -68.82 -124.96 REMARK 500 VAL A 622 -76.57 -58.60 REMARK 500 ASP A 623 43.27 -98.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 56 TYR A 57 -78.19 REMARK 500 PHE A 502 GLU A 503 84.37 REMARK 500 GLY A 621 VAL A 622 149.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 THR A 281 -20.9 R S CBETA WRONG HAND REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1659 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1653 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1654 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1655 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1656 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1657 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR A1658 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VPM RELATED DB: PDB REMARK 900 TRYPANOTHIONE SYNTHETASE REMARK 900 RELATED ID: 2VOB RELATED DB: PDB REMARK 900 TRYPANOTHIONE SYNTHETASE DBREF 2VPS A 1 652 UNP Q711P7 Q711P7_LEIMA 1 652 SEQRES 1 A 652 MET SER SER LEU GLN ARG ALA SER VAL SER PHE ASN LYS SEQRES 2 A 652 PRO GLY HIS ILE PRO PHE GLY ALA VAL GLN GLY TYR ALA SEQRES 3 A 652 PRO GLY GLY VAL PRO ALA TYR SER ASN LYS HIS ASP HIS SEQRES 4 A 652 TYR PHE SER GLY GLU ARG ASN ILE GLU ASP ASN ILE PHE SEQRES 5 A 652 PHE GLY PHE LYS TYR GLN CYS VAL GLU PHE ALA ARG ARG SEQRES 6 A 652 TRP LEU LEU VAL ARG LYS GLY LEU LEU LEU PRO ASP VAL SEQRES 7 A 652 ASN TRP ALA CYS HIS ILE PHE GLN LEU LYS GLU VAL ARG SEQRES 8 A 652 ASP ALA ALA THR THR GLU SER PHE ALA VAL LEU GLN VAL SEQRES 9 A 652 ARG ASN GLY THR THR THR LYS PRO GLU ALA ASP ALA LEU SEQRES 10 A 652 LEU VAL TYR PRO SER THR ASP ALA ASN PRO VAL GLY HIS SEQRES 11 A 652 VAL GLY THR ILE THR GLU VAL GLY ASP ASP TYR VAL CYS SEQRES 12 A 652 VAL ALA ASP GLN ASN TYR ARG PHE HIS LYS TRP GLU SER SEQRES 13 A 652 SER CYS ALA TYR LYS LEU LYS LEU ASP HIS ARG ASP GLY SEQRES 14 A 652 ILE TRP THR ILE ILE ASP ASP ILE ASP ALA ASP GLU ILE SEQRES 15 A 652 GLU ILE PRO LEU GLY TRP LEU THR PHE PRO GLY ARG ALA SEQRES 16 A 652 ASN ARG PRO GLU GLY ALA PRO PRO VAL ALA LEU HIS PRO SEQRES 17 A 652 SER LEU HIS PHE LYS GLU PRO PRO LYS PRO TYR LEU LEU SEQRES 18 A 652 ARG ARG ASN PHE LEU PRO THR GLU SER LYS ALA ASN TRP SEQRES 19 A 652 LEU ASP MET ASN ASN PRO ALA GLU ARG LEU PHE VAL GLU SEQRES 20 A 652 GLU PHE GLY MET ASP VAL SER ARG THR ARG LEU GLU GLU SEQRES 21 A 652 LYS VAL VAL SER TYR TYR GLU SER ASN HIS GLU PHE HIS SEQRES 22 A 652 LEU ARG CYS VAL ALA TYR GLY THR GLN LEU HIS ALA ILE SEQRES 23 A 652 PHE MET GLU ALA THR ALA GLN VAL ILE GLU SER ASP GLU SEQRES 24 A 652 LYS LEU ARG LEU PHE ALA ILE PRO GLU GLU PHE TRP PRO SEQRES 25 A 652 ARG ILE ARG HIS SER TRP LYS TYR GLN GLN THR TYR ILE SEQRES 26 A 652 SER GLY ARG PHE ASP PHE ALA PHE ASN ASN GLU THR GLY SEQRES 27 A 652 GLU VAL LYS CYS PHE GLU TYR ASN ALA ASP SER ALA SER SEQRES 28 A 652 THR LEU LEU GLU CYS GLY LEU ILE GLN GLN LYS TRP ALA SEQRES 29 A 652 GLU SER VAL GLY LEU ASP LYS GLN ASP THR ARG GLY SER SEQRES 30 A 652 GLY PHE ALA VAL GLU ARG ASN LEU LYS MET ALA TRP ALA SEQRES 31 A 652 ASN SER GLY ALA THR GLY ARG VAL HIS PHE CYS VAL ASP SEQRES 32 A 652 GLU GLU ARG GLU GLU GLN TYR THR ALA LEU TYR CYS MET SEQRES 33 A 652 GLN ALA ALA GLU ALA VAL GLY LEU GLU GLY LYS LEU CYS SEQRES 34 A 652 ILE LEU PHE ASP GLU PHE ARG PHE ASP ASP ASN GLY HIS SEQRES 35 A 652 VAL VAL ASP SER ASP GLY VAL ARG VAL ARG ASN VAL TRP SEQRES 36 A 652 LYS THR TRP MET TRP GLU SER ALA ILE THR ASP TYR TYR SEQRES 37 A 652 ALA ALA ARG GLU GLU ARG GLY GLU ASN TRP LYS PRO SER SEQRES 38 A 652 PRO LYS ASP LYS VAL ARG LEU CYS ASP LEU LEU LEU GLY SEQRES 39 A 652 ASP ASP TRP GLU ILE LEU TYR PHE GLU PRO MET TRP LYS SEQRES 40 A 652 VAL ILE PRO SER ASN LYS ALA ILE LEU PRO MET ILE TYR SEQRES 41 A 652 HIS ASN HIS PRO GLU HIS PRO ALA ILE LEU LYS ALA GLU SEQRES 42 A 652 TYR GLU LEU THR ASP GLU LEU ARG LYS HIS GLY TYR ALA SEQRES 43 A 652 LYS LYS PRO ILE VAL GLY ARG VAL GLY SER ASN VAL ILE SEQRES 44 A 652 ILE THR SER GLY ASP GLY VAL VAL HIS ALA GLU SER GLY SEQRES 45 A 652 GLY LYS TYR GLY LYS ARG ASN MET ILE TYR GLN GLN LEU SEQRES 46 A 652 PHE GLU LEU LYS LYS GLN ASP ASP TYR TYR ALA ILE ILE SEQRES 47 A 652 GLY GLY TRP MET ILE GLY ASP ALA PHE SER GLY THR GLY SEQRES 48 A 652 ILE ARG GLU ASP LYS SER VAL ILE THR GLY VAL ASP SER SEQRES 49 A 652 PRO PHE ALA ALA VAL ARG ILE LYS THR ASP LYS LEU PRO SEQRES 50 A 652 HIS PRO VAL THR LEU LYS ASP ILE ASP LYS MET ALA GLU SEQRES 51 A 652 ASP GLU HET CL A1659 1 HET CL A1653 1 HET CL A1654 1 HET CL A1655 1 HET CL A1656 1 HET BR A1657 1 HET BR A1658 1 HETNAM CL CHLORIDE ION HETNAM BR BROMIDE ION FORMUL 2 CL 5(CL 1-) FORMUL 3 BR 2(BR 1-) FORMUL 4 HOH *45(H2 O) HELIX 1 1 GLN A 58 GLY A 72 1 15 HELIX 2 2 TRP A 80 LEU A 87 5 8 HELIX 3 3 HIS A 207 HIS A 211 5 5 HELIX 4 4 ASN A 239 GLU A 247 1 9 HELIX 5 5 HIS A 270 GLU A 296 1 27 HELIX 6 6 SER A 297 PHE A 304 1 8 HELIX 7 7 PRO A 307 GLU A 309 5 3 HELIX 8 8 PHE A 310 TYR A 320 1 11 HELIX 9 9 THR A 352 LEU A 358 1 7 HELIX 10 10 LEU A 358 VAL A 367 1 10 HELIX 11 11 ALA A 380 ASN A 391 1 12 HELIX 12 12 GLU A 405 VAL A 422 1 18 HELIX 13 13 MET A 459 ARG A 474 1 16 HELIX 14 14 ARG A 487 LEU A 493 1 7 HELIX 15 15 PRO A 504 ILE A 509 5 6 HELIX 16 16 ASN A 512 ALA A 514 5 3 HELIX 17 17 ILE A 515 HIS A 523 1 9 HELIX 18 18 THR A 537 GLY A 544 1 8 SHEET 1 AA 2 VAL A 9 SER A 10 0 SHEET 2 AA 2 GLN A 321 GLN A 322 1 N GLN A 322 O VAL A 9 SHEET 1 AB 2 VAL A 22 ALA A 26 0 SHEET 2 AB 2 VAL A 30 TYR A 33 -1 O VAL A 30 N ALA A 26 SHEET 1 AC 2 ARG A 45 GLU A 48 0 SHEET 2 AC 2 ILE A 51 PHE A 55 -1 O ILE A 51 N GLU A 48 SHEET 1 AD 3 LEU A 73 LEU A 74 0 SHEET 2 AD 3 GLU A 89 ASP A 92 -1 O ARG A 91 N LEU A 74 SHEET 3 AD 3 SER A 98 ALA A 100 -1 O PHE A 99 N VAL A 90 SHEET 1 AE 7 LEU A 102 ARG A 105 0 SHEET 2 AE 7 GLY A 187 THR A 190 -1 O TRP A 188 N VAL A 104 SHEET 3 AE 7 ALA A 116 TYR A 120 -1 O LEU A 117 N LEU A 189 SHEET 4 AE 7 HIS A 130 VAL A 137 -1 O HIS A 130 N TYR A 120 SHEET 5 AE 7 TYR A 141 ALA A 145 -1 O CYS A 143 N THR A 135 SHEET 6 AE 7 TYR A 160 ARG A 167 -1 O TYR A 160 N VAL A 144 SHEET 7 AE 7 ILE A 170 ILE A 174 -1 O ILE A 170 N ARG A 167 SHEET 1 AF 4 LEU A 220 PHE A 225 0 SHEET 2 AF 4 VAL A 263 ASN A 269 -1 O VAL A 263 N PHE A 225 SHEET 3 AF 4 VAL A 629 LYS A 632 1 O ARG A 630 N SER A 268 SHEET 4 AF 4 THR A 374 GLY A 376 -1 O ARG A 375 N ILE A 631 SHEET 1 AG 5 VAL A 340 ASN A 346 0 SHEET 2 AG 5 SER A 326 PHE A 333 -1 O ARG A 328 N ASN A 346 SHEET 3 AG 5 TYR A 595 ILE A 603 -1 O ILE A 598 N PHE A 331 SHEET 4 AG 5 ALA A 606 ASP A 615 -1 O ALA A 606 N ILE A 603 SHEET 5 AG 5 PHE A 626 ALA A 627 -1 O ALA A 627 N ILE A 612 SHEET 1 AH 4 GLU A 425 ILE A 430 0 SHEET 2 AH 4 ARG A 397 VAL A 402 1 O VAL A 398 N LYS A 427 SHEET 3 AH 4 ASN A 453 LYS A 456 1 O ASN A 453 N HIS A 399 SHEET 4 AH 4 LEU A 500 PHE A 502 1 O LEU A 500 N VAL A 454 SHEET 1 AI 2 ARG A 436 PHE A 437 0 SHEET 2 AI 2 VAL A 443 VAL A 444 -1 O VAL A 444 N ARG A 436 SHEET 1 AJ 3 ALA A 532 GLU A 533 0 SHEET 2 AJ 3 MET A 580 GLN A 584 -1 O TYR A 582 N GLU A 533 SHEET 3 AJ 3 TYR A 545 PRO A 549 -1 O ALA A 546 N GLN A 583 SITE 1 AC1 1 SER A 122 SITE 1 AC2 4 GLY A 396 ARG A 397 ARG A 541 TYR A 545 SITE 1 AC3 1 ARG A 167 SITE 1 AC4 2 PHE A 55 GLN A 58 SITE 1 AC5 2 PRO A 312 ARG A 315 SITE 1 AC6 2 ARG A 6 LYS A 547 SITE 1 AC7 1 ARG A 328 CRYST1 71.050 85.600 168.340 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014075 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011682 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005940 0.00000 MASTER 449 0 7 18 34 0 7 6 0 0 0 51 END