HEADER CYTOSOLIC PROTEIN 18-OCT-07 2VEC TITLE THE CRYSTAL STRUCTURE OF THE PROTEIN YHAK FROM ESCHERICHIA TITLE 2 COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PIRIN-LIKE PROTEIN YHAK; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 2-233; COMPND 5 SYNONYM: YHAK; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: CYS122 IS OXIDIZED TO A SULFENIC ACID. AN COMPND 8 INTRAMOLECULAR DISULFIDE BOND BETWEEN CYS10 AND CYS204. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PT73.3 KEYWDS ROS, BICUPIN, SULFENIC ACID, REACTIVE CYSTEINE, CYTOSOLIC KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.GURMU,J.LU,K.A.JOHNSON,P.NORDLUND,A.HOLMGREN,H.ERLANDSEN REVDAT 2 24-FEB-09 2VEC 1 VERSN REVDAT 1 01-JUL-08 2VEC 0 JRNL AUTH D.GURMU,J.LU,K.A.JOHNSON,P.NORDLUND,A.HOLMGREN, JRNL AUTH 2 H.ERLANDSEN JRNL TITL THE CRYSTAL STRUCTURE OF THE PROTEIN YHAK FROM JRNL TITL 2 ESCHERICHIA COLI REVEALS A NEW SUBCLASS OF REDOX JRNL TITL 3 SENSITIVE ENTEROBACTERIAL BICUPINS. JRNL REF PROTEINS V. 74 18 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18561187 JRNL DOI 10.1002/PROT.22128 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.75 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 22438 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1214 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1490 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2390 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1779 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 9 REMARK 3 SOLVENT ATOMS : 113 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.52000 REMARK 3 B22 (A**2) : 1.52000 REMARK 3 B33 (A**2) : -3.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.079 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.130 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.948 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1831 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2488 ; 1.670 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 230 ;11.283 ; 5.087 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 89 ;39.463 ;24.270 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 299 ;13.698 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;18.720 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 269 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1420 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 721 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1211 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 130 ; 0.125 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 41 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.212 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1176 ; 1.078 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1808 ; 1.463 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 755 ; 2.487 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 679 ; 3.934 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 134 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9520 1.1320 67.1310 REMARK 3 T TENSOR REMARK 3 T11: -0.0145 T22: -0.0922 REMARK 3 T33: -0.0270 T12: -0.0572 REMARK 3 T13: 0.0322 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 1.0088 L22: 4.0289 REMARK 3 L33: 3.9978 L12: -0.4514 REMARK 3 L13: 0.1067 L23: -0.0547 REMARK 3 S TENSOR REMARK 3 S11: 0.0491 S12: 0.0546 S13: 0.2261 REMARK 3 S21: -0.3299 S22: -0.0240 S23: -0.4991 REMARK 3 S31: -0.4104 S32: 0.4355 S33: -0.0251 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 135 A 233 REMARK 3 ORIGIN FOR THE GROUP (A): -20.0730 -2.7080 74.1360 REMARK 3 T TENSOR REMARK 3 T11: -0.0805 T22: -0.0518 REMARK 3 T33: -0.0396 T12: 0.0123 REMARK 3 T13: -0.0386 T23: 0.0414 REMARK 3 L TENSOR REMARK 3 L11: 1.0582 L22: 2.5426 REMARK 3 L33: 3.3694 L12: -0.4063 REMARK 3 L13: 0.1593 L23: -0.5472 REMARK 3 S TENSOR REMARK 3 S11: -0.0006 S12: -0.0916 S13: -0.0234 REMARK 3 S21: -0.0824 S22: 0.1571 S23: 0.3527 REMARK 3 S31: -0.1772 S32: -0.5352 S33: -0.1565 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2VEC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-OCT-07. REMARK 100 THE PDBE ID CODE IS EBI-34160. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97970 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23745 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.85 REMARK 200 RESOLUTION RANGE LOW (A) : 36.42 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 4.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 200 DATA REDUNDANCY : 19.3 REMARK 200 R MERGE (I) : 0.08 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.00 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.3 REMARK 200 DATA REDUNDANCY IN SHELL : 19.3 REMARK 200 R MERGE FOR SHELL (I) : 0.55 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.30 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M CITRIC ACID, PH 5.0, 2.0 REMARK 280 M NACL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 81.04600 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.82400 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.82400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 121.56900 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.82400 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.82400 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.52300 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.82400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.82400 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 121.56900 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.82400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.82400 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 40.52300 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 81.04600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 GLY A -15 REMARK 465 THR A -14 REMARK 465 SER A -13 REMARK 465 LEU A -12 REMARK 465 TYR A -11 REMARK 465 LYS A -10 REMARK 465 LYS A -9 REMARK 465 ALA A -8 REMARK 465 GLY A -7 REMARK 465 SER A -6 REMARK 465 GLU A -5 REMARK 465 ASN A -4 REMARK 465 LEU A -3 REMARK 465 TYR A -2 REMARK 465 PHE A -1 REMARK 465 GLN A 0 REMARK 465 GLY A 1 REMARK 465 ILE A 2 REMARK 465 THR A 3 REMARK 465 THR A 4 REMARK 465 ARG A 5 REMARK 465 THR A 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 108 CD LYS A 108 CE 0.254 REMARK 500 LYS A 108 CE LYS A 108 NZ 0.188 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 108 CD - CE - NZ ANGL. DEV. = -16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 53 114.77 -171.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 GLN A 9 22.1 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1234 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A1235 DBREF 2VEC A -22 1 PDB 2VEC 2VEC -22 1 DBREF 2VEC A 2 233 UNP P42624 YHAK_ECOLI 2 233 SEQRES 1 A 256 MET HIS HIS HIS HIS HIS HIS GLY THR SER LEU TYR LYS SEQRES 2 A 256 LYS ALA GLY SER GLU ASN LEU TYR PHE GLN GLY ILE THR SEQRES 3 A 256 THR ARG THR ALA ARG GLN CYS GLY GLN ALA ASP TYR GLY SEQRES 4 A 256 TRP LEU GLN ALA ARG TYR THR PHE SER PHE GLY HIS TYR SEQRES 5 A 256 PHE ASP PRO LYS LEU LEU GLY TYR ALA SER LEU ARG VAL SEQRES 6 A 256 LEU ASN GLN GLU VAL LEU ALA PRO GLY ALA ALA PHE GLN SEQRES 7 A 256 PRO ARG THR TYR PRO LYS VAL ASP ILE LEU ASN VAL ILE SEQRES 8 A 256 LEU ASP GLY GLU ALA GLU TYR ARG ASP SER GLU GLY ASN SEQRES 9 A 256 HIS VAL GLN ALA SER ALA GLY GLU ALA LEU LEU LEU SER SEQRES 10 A 256 THR GLN PRO GLY VAL SER TYR SER GLU HIS ASN LEU SER SEQRES 11 A 256 LYS ASP LYS PRO LEU THR ARG MET GLN LEU TRP LEU ASP SEQRES 12 A 256 ALA CSO PRO GLN ARG GLU ASN PRO LEU ILE GLN LYS LEU SEQRES 13 A 256 ALA LEU ASN MET GLY LYS GLN GLN LEU ILE ALA SER PRO SEQRES 14 A 256 GLU GLY ALA MET GLY SER LEU GLN LEU ARG GLN GLN VAL SEQRES 15 A 256 TRP LEU HIS HIS ILE VAL LEU ASP LYS GLY GLU SER ALA SEQRES 16 A 256 ASN PHE GLN LEU HIS GLY PRO ARG ALA TYR LEU GLN SER SEQRES 17 A 256 ILE HIS GLY LYS PHE HIS ALA LEU THR HIS HIS GLU GLU SEQRES 18 A 256 LYS ALA ALA LEU THR CYS GLY ASP GLY ALA PHE ILE ARG SEQRES 19 A 256 ASP GLU ALA ASN ILE THR LEU VAL ALA ASP SER PRO LEU SEQRES 20 A 256 ARG ALA LEU LEU ILE ASP LEU PRO VAL MODRES 2VEC CSO A 122 CYS S-HYDROXYCYSTINE HET CSO A 122 7 HET CL A1234 1 HET CL A1235 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM CL CHLORIDE ION FORMUL 2 CL 2(CL 1-) FORMUL 3 CSO C3 H7 N O3 S FORMUL 4 HOH *113(H2 O1) HELIX 1 1 GLY A 16 ALA A 20 5 5 HELIX 2 2 GLY A 148 SER A 152 5 5 SHEET 1 AA 6 TYR A 22 SER A 25 0 SHEET 2 AA 6 LEU A 40 LEU A 48 -1 O LEU A 43 N PHE A 24 SHEET 3 AA 6 LEU A 112 ASP A 120 -1 O LEU A 112 N LEU A 48 SHEET 4 AA 6 VAL A 62 ASP A 70 -1 O ASP A 63 N LEU A 119 SHEET 5 AA 6 GLU A 89 LEU A 93 -1 O GLU A 89 N ILE A 68 SHEET 6 AA 6 ILE A 130 ALA A 134 -1 O GLN A 131 N LEU A 92 SHEET 1 AB 4 ALA A 53 ARG A 57 0 SHEET 2 AB 4 TYR A 101 ASN A 105 -1 O TYR A 101 N ARG A 57 SHEET 3 AB 4 GLU A 72 ASP A 77 -1 O GLU A 74 N HIS A 104 SHEET 4 AB 4 HIS A 82 SER A 86 -1 O VAL A 83 N TYR A 75 SHEET 1 AC 6 LEU A 153 GLN A 154 0 SHEET 2 AC 6 GLN A 140 SER A 145 1 O ILE A 143 N LEU A 153 SHEET 3 AC 6 TRP A 160 LEU A 166 -1 O LEU A 161 N ILE A 143 SHEET 4 AC 6 LEU A 224 LEU A 231 -1 O LEU A 224 N LEU A 166 SHEET 5 AC 6 ARG A 180 HIS A 187 -1 O ARG A 180 N LEU A 231 SHEET 6 AC 6 GLY A 207 ARG A 211 -1 O ALA A 208 N LEU A 183 SHEET 1 AD 4 SER A 171 GLN A 175 0 SHEET 2 AD 4 ASN A 215 ALA A 220 -1 O ILE A 216 N PHE A 174 SHEET 3 AD 4 PHE A 190 THR A 194 -1 O HIS A 191 N VAL A 219 SHEET 4 AD 4 GLU A 197 LEU A 202 -1 O GLU A 197 N THR A 194 SSBOND 1 CYS A 10 CYS A 204 1555 1555 2.05 LINK C ALA A 121 N CSO A 122 1555 1555 1.34 LINK C CSO A 122 N PRO A 123 1555 1555 1.34 CISPEP 1 CYS A 10 GLY A 11 0 -2.33 SITE 1 AC1 5 TYR A 37 ALA A 38 GLN A 157 GLN A 158 SITE 2 AC1 5 HOH A2031 SITE 1 AC2 3 ARG A 180 LYS A 199 ARG A 211 CRYST1 57.648 57.648 162.092 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017347 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006169 0.00000 MASTER 408 0 3 2 20 0 3 6 0 0 0 20 END