HEADER CELL ADHESION 26-SEP-07 2VCO TITLE CRYSTAL STRUCTURE OF THE FIMBRIAL ADHESIN FIMH IN COMPLEX WITH ITS TITLE 2 HIGH-MANNOSE EPITOPE CAVEAT 2VCO MAN C 3 HAS WRONG CHIRALITY AT ATOM C1 MAN D 3 HAS WRONG CAVEAT 2 2VCO CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN FIMH; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RECEPTOR-BINDING DOMAIN, RESIDUES 22-179; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: K514; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C43; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMMB91 KEYWDS PILI, GLYCAN, MANNOSE, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR A.WELLENS,C.GAROFALO,H.NGUYEN,L.WYNS,H.DE GREVE,S.J.HULTGREN, AUTHOR 2 J.BOUCKAERT REVDAT 5 29-JUL-20 2VCO 1 CAVEAT COMPND REMARK HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 24-JUL-19 2VCO 1 REMARK LINK REVDAT 3 30-MAY-12 2VCO 1 KEYWDS JRNL REMARK VERSN REVDAT 3 2 1 FORMUL SITE REVDAT 2 24-FEB-09 2VCO 1 VERSN REVDAT 1 13-MAY-08 2VCO 0 JRNL AUTH A.WELLENS,C.GAROFALO,H.NGUYEN,N.VAN GERVEN,R.SLATTEGARD, JRNL AUTH 2 J.P.HERNALSTEENS,L.WYNS,S.OSCARSON,H.DE GREVE,S.J.HULTGREN, JRNL AUTH 3 J.BOUCKAERT JRNL TITL INTERVENING WITH URINARY TRACT INFECTIONS USING JRNL TITL 2 ANTI-ADHESIVES BASED ON THE CRYSTAL STRUCTURE OF THE JRNL TITL 3 FIMH-OLIGOMANNOSE-3 COMPLEX. JRNL REF PLOS ONE V. 3 E2040 2008 JRNL REFN ESSN 1932-6203 JRNL PMID 18446213 JRNL DOI 10.1371/JOURNAL.PONE.0002040 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 22312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1135 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1551 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2280 REMARK 3 BIN FREE R VALUE SET COUNT : 74 REMARK 3 BIN FREE R VALUE : 0.3100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2388 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 131 REMARK 3 SOLVENT ATOMS : 420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.85000 REMARK 3 B22 (A**2) : 0.85000 REMARK 3 B33 (A**2) : -1.28000 REMARK 3 B12 (A**2) : 0.43000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.206 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.389 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.926 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2595 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3585 ; 1.178 ; 1.907 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 316 ; 8.431 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 101 ;35.434 ;24.653 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 335 ;14.623 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;19.532 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 446 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1928 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1130 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1768 ; 0.322 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 325 ; 0.187 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 74 ; 0.247 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1607 ; 1.027 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2580 ; 1.637 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1115 ; 2.565 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1005 ; 3.843 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 158 6 REMARK 3 1 B 1 B 158 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1180 ; 0.36 ; 5.00 REMARK 3 LOOSE POSITIONAL 1 B (A): 1180 ; 0.36 ; 5.00 REMARK 3 LOOSE THERMAL 1 A (A**2): 1180 ; 4.89 ; 10.00 REMARK 3 LOOSE THERMAL 1 B (A**2): 1180 ; 4.89 ; 10.00 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1161 A 1165 4 REMARK 3 1 B 1160 B 1164 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 A (A): 51 ; 0.20 ; 0.50 REMARK 3 MEDIUM POSITIONAL 2 B (A): 51 ; 0.20 ; 0.50 REMARK 3 MEDIUM THERMAL 2 A (A**2): 51 ; 0.81 ; 2.00 REMARK 3 MEDIUM THERMAL 2 B (A**2): 51 ; 0.81 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2VCO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1290033972. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X12 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 279479 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 78.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.42000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1UWF REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M LI2SO4, 0.1 M TRIS-HCL PH 8.5, REMARK 280 0.01 M NICL2, 3% GLYCEROL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.49333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 52.98667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 52.98667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.49333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 50 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 114 O HOH A 2162 2.14 REMARK 500 OG SER A 113 O3 SO4 A 1160 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 136 31.41 -99.76 REMARK 500 TYR A 137 -50.11 -124.45 REMARK 500 ASN B 7 49.96 26.99 REMARK 500 THR B 9 -167.31 -120.09 REMARK 500 TYR B 48 58.46 -140.42 REMARK 500 SER B 78 61.66 34.60 REMARK 500 PRO B 91 162.46 -49.56 REMARK 500 TYR B 137 -44.07 -140.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 33 LEU A 34 148.57 REMARK 500 GLY B 8 THR B 9 -150.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2003 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A2009 DISTANCE = 6.77 ANGSTROMS REMARK 525 HOH A2034 DISTANCE = 6.00 ANGSTROMS REMARK 525 HOH A2035 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH A2042 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A2096 DISTANCE = 6.44 ANGSTROMS REMARK 525 HOH B2008 DISTANCE = 6.55 ANGSTROMS REMARK 525 HOH B2013 DISTANCE = 8.33 ANGSTROMS REMARK 525 HOH B2014 DISTANCE = 9.17 ANGSTROMS REMARK 525 HOH B2025 DISTANCE = 6.90 ANGSTROMS REMARK 525 HOH B2026 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B2035 DISTANCE = 7.21 ANGSTROMS REMARK 525 HOH B2085 DISTANCE = 6.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A1159 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 45 NE2 REMARK 620 2 ASP A 47 OD1 95.7 REMARK 620 3 HOH A2072 O 99.8 164.1 REMARK 620 4 HOH A2073 O 77.5 100.0 86.9 REMARK 620 5 HOH A2074 O 102.7 97.3 75.9 162.6 REMARK 620 6 HOH A2075 O 169.4 87.9 77.5 92.1 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B1159 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 45 NE2 REMARK 620 2 ASP B 47 OD1 94.4 REMARK 620 3 HOH B2079 O 92.0 92.3 REMARK 620 4 HOH B2080 O 171.7 92.1 82.5 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1KIU RELATED DB: PDB REMARK 900 FIMH ADHESIN Q133N MUTANT-FIMC CHAPERONE COMPLEX WITHMETHYL-ALPHA-D- REMARK 900 MANNOSE REMARK 900 RELATED ID: 1KLF RELATED DB: PDB REMARK 900 FIMH ADHESIN-FIMC CHAPERONE COMPLEX WITH D- MANNOSE REMARK 900 RELATED ID: 1ZE3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF FIMD (N-TERMINAL DOMAIN) REMARK 900 WITH FIMC AND THE PILIN DOMAIN OF FIMH REMARK 900 RELATED ID: 1QUN RELATED DB: PDB REMARK 900 X-RAY STRUCTURE OF THE FIMC-FIMH CHAPERONE ADHESIN COMPLEX FROM REMARK 900 UROPATHOGENIC E.COLI REMARK 900 RELATED ID: 1TR7 RELATED DB: PDB REMARK 900 FIMH ADHESIN RECEPTOR BINDING DOMAIN FROM UROPATHOGENIC E.COLI REMARK 900 RELATED ID: 1UWF RELATED DB: PDB REMARK 900 1.7 A RESOLUTION STRUCTURE OF THE RECEPTOR BINDING DOMAIN OF THE REMARK 900 FIMH ADHESIN FROM UROPATHOGENIC E. COLI DBREF 2VCO A 1 158 UNP P08191 FIMH_ECOLI 22 179 DBREF 2VCO B 1 158 UNP P08191 FIMH_ECOLI 22 179 SEQRES 1 A 158 PHE ALA CYS LYS THR ALA ASN GLY THR ALA ILE PRO ILE SEQRES 2 A 158 GLY GLY GLY SER ALA ASN VAL TYR VAL ASN LEU ALA PRO SEQRES 3 A 158 VAL VAL ASN VAL GLY GLN ASN LEU VAL VAL ASP LEU SER SEQRES 4 A 158 THR GLN ILE PHE CYS HIS ASN ASP TYR PRO GLU THR ILE SEQRES 5 A 158 THR ASP TYR VAL THR LEU GLN ARG GLY SER ALA TYR GLY SEQRES 6 A 158 GLY VAL LEU SER ASN PHE SER GLY THR VAL LYS TYR SER SEQRES 7 A 158 GLY SER SER TYR PRO PHE PRO THR THR SER GLU THR PRO SEQRES 8 A 158 ARG VAL VAL TYR ASN SER ARG THR ASP LYS PRO TRP PRO SEQRES 9 A 158 VAL ALA LEU TYR LEU THR PRO VAL SER SER ALA GLY GLY SEQRES 10 A 158 VAL ALA ILE LYS ALA GLY SER LEU ILE ALA VAL LEU ILE SEQRES 11 A 158 LEU ARG GLN THR ASN ASN TYR ASN SER ASP ASP PHE GLN SEQRES 12 A 158 PHE VAL TRP ASN ILE TYR ALA ASN ASN ASP VAL VAL VAL SEQRES 13 A 158 PRO THR SEQRES 1 B 158 PHE ALA CYS LYS THR ALA ASN GLY THR ALA ILE PRO ILE SEQRES 2 B 158 GLY GLY GLY SER ALA ASN VAL TYR VAL ASN LEU ALA PRO SEQRES 3 B 158 VAL VAL ASN VAL GLY GLN ASN LEU VAL VAL ASP LEU SER SEQRES 4 B 158 THR GLN ILE PHE CYS HIS ASN ASP TYR PRO GLU THR ILE SEQRES 5 B 158 THR ASP TYR VAL THR LEU GLN ARG GLY SER ALA TYR GLY SEQRES 6 B 158 GLY VAL LEU SER ASN PHE SER GLY THR VAL LYS TYR SER SEQRES 7 B 158 GLY SER SER TYR PRO PHE PRO THR THR SER GLU THR PRO SEQRES 8 B 158 ARG VAL VAL TYR ASN SER ARG THR ASP LYS PRO TRP PRO SEQRES 9 B 158 VAL ALA LEU TYR LEU THR PRO VAL SER SER ALA GLY GLY SEQRES 10 B 158 VAL ALA ILE LYS ALA GLY SER LEU ILE ALA VAL LEU ILE SEQRES 11 B 158 LEU ARG GLN THR ASN ASN TYR ASN SER ASP ASP PHE GLN SEQRES 12 B 158 PHE VAL TRP ASN ILE TYR ALA ASN ASN ASP VAL VAL VAL SEQRES 13 B 158 PRO THR HET NAG C 1 15 HET NAG C 2 14 HET MAN C 3 11 HET MAN C 4 11 HET MAN C 5 11 HET NAG D 1 15 HET NAG D 2 14 HET MAN D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET NI A1159 1 HET SO4 A1160 5 HET NI B1159 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM NI NICKEL (II) ION HETNAM SO4 SULFATE ION FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 MAN 6(C6 H12 O6) FORMUL 5 NI 2(NI 2+) FORMUL 6 SO4 O4 S 2- FORMUL 8 HOH *420(H2 O) HELIX 1 1 TYR A 64 ASN A 70 1 7 HELIX 2 2 TYR B 64 ASN B 70 1 7 SHEET 1 AA 4 ALA A 10 ILE A 11 0 SHEET 2 AA 4 ALA A 2 THR A 5 -1 O CYS A 3 N ILE A 11 SHEET 3 AA 4 ILE A 42 HIS A 45 -1 O PHE A 43 N LYS A 4 SHEET 4 AA 4 LYS A 101 PRO A 102 -1 O LYS A 101 N CYS A 44 SHEET 1 AB 5 GLY A 16 VAL A 22 0 SHEET 2 AB 5 PHE A 142 ALA A 150 1 O GLN A 143 N GLY A 16 SHEET 3 AB 5 LEU A 125 ASN A 135 -1 N ILE A 126 O ILE A 148 SHEET 4 AB 5 ASP A 54 ALA A 63 -1 O TYR A 55 N THR A 134 SHEET 5 AB 5 VAL A 93 TYR A 95 -1 O VAL A 93 N VAL A 56 SHEET 1 AC 4 LEU A 34 ASP A 37 0 SHEET 2 AC 4 VAL A 105 PRO A 111 -1 O LEU A 107 N VAL A 36 SHEET 3 AC 4 PHE A 71 TYR A 77 -1 O SER A 72 N THR A 110 SHEET 4 AC 4 SER A 80 PHE A 84 -1 O SER A 80 N TYR A 77 SHEET 1 AD 2 GLY A 117 ILE A 120 0 SHEET 2 AD 2 VAL A 154 VAL A 156 -1 O VAL A 154 N ALA A 119 SHEET 1 BA 4 ALA B 10 ILE B 11 0 SHEET 2 BA 4 ALA B 2 THR B 5 -1 O CYS B 3 N ILE B 11 SHEET 3 BA 4 ILE B 42 HIS B 45 -1 O PHE B 43 N LYS B 4 SHEET 4 BA 4 LYS B 101 PRO B 102 -1 O LYS B 101 N CYS B 44 SHEET 1 BB 5 GLY B 16 VAL B 22 0 SHEET 2 BB 5 PHE B 142 ALA B 150 1 O GLN B 143 N GLY B 16 SHEET 3 BB 5 LEU B 125 ASN B 135 -1 N ILE B 126 O ILE B 148 SHEET 4 BB 5 ASP B 54 ALA B 63 -1 O TYR B 55 N THR B 134 SHEET 5 BB 5 VAL B 93 TYR B 95 -1 O VAL B 93 N VAL B 56 SHEET 1 BC 4 LEU B 34 ASP B 37 0 SHEET 2 BC 4 VAL B 105 PRO B 111 -1 O LEU B 107 N VAL B 36 SHEET 3 BC 4 PHE B 71 TYR B 77 -1 O SER B 72 N THR B 110 SHEET 4 BC 4 SER B 80 PHE B 84 -1 O SER B 80 N TYR B 77 SHEET 1 BD 2 GLY B 117 ILE B 120 0 SHEET 2 BD 2 VAL B 154 VAL B 156 -1 O VAL B 154 N ALA B 119 SSBOND 1 CYS A 3 CYS A 44 1555 1555 2.06 SSBOND 2 CYS B 3 CYS B 44 1555 1555 2.08 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.45 LINK O4 NAG C 2 C1 MAN C 3 1555 1555 1.45 LINK O3 MAN C 3 C1 MAN C 4 1555 1555 1.44 LINK O6 MAN C 3 C1 MAN C 5 1555 1555 1.45 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O4 NAG D 2 C1 MAN D 3 1555 1555 1.45 LINK O3 MAN D 3 C1 MAN D 4 1555 1555 1.44 LINK O6 MAN D 3 C1 MAN D 5 1555 1555 1.44 LINK NE2 HIS A 45 NI NI A1159 1555 1555 2.20 LINK OD1 ASP A 47 NI NI A1159 1555 1555 2.02 LINK NI NI A1159 O HOH A2072 1555 1555 2.39 LINK NI NI A1159 O HOH A2073 1555 1555 1.79 LINK NI NI A1159 O HOH A2074 1555 1555 1.86 LINK NI NI A1159 O HOH A2075 1555 1555 2.24 LINK NE2 HIS B 45 NI NI B1159 1555 1555 2.21 LINK OD1 ASP B 47 NI NI B1159 1555 1555 1.93 LINK NI NI B1159 O HOH B2079 1555 1555 1.92 LINK NI NI B1159 O HOH B2080 1555 1555 2.23 CISPEP 1 PHE A 84 PRO A 85 0 -0.57 CISPEP 2 PHE B 84 PRO B 85 0 0.91 CRYST1 90.562 90.562 79.480 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011042 0.006375 0.000000 0.00000 SCALE2 0.000000 0.012750 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012582 0.00000 MTRIX1 1 0.517600 -0.084870 0.851400 40.69000 1 MTRIX2 1 0.625400 -0.641600 -0.444200 12.75000 1 MTRIX3 1 0.583900 0.762400 -0.279000 -29.82000 1 MASTER 397 0 13 2 30 0 0 9 0 0 0 26 END