HEADER RIBOSOMAL PROTEIN 21-AUG-07 2V94 TITLE CRYSTAL STRUCTURE OF P. ABYSSI RPS24 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S24E; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: RPS24; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS ABYSSI; SOURCE 3 ORGANISM_TAXID: 29292; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS RIBOSOMAL PROTEIN, RIBONUCLEOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.LEGRAND,N.PINAUD,P.E.GLEIZES,S.FRIBOURG REVDAT 3 13-JUL-11 2V94 1 VERSN REVDAT 2 24-FEB-09 2V94 1 VERSN REVDAT 1 29-APR-08 2V94 0 JRNL AUTH V.CHOESMEL,S.FRIBOURG,A.H.AGUISSA-TOURE,N.PINAUD,P.LEGRAND, JRNL AUTH 2 H.T.GAZDA,P.E.GLEIZES JRNL TITL MUTATION OF RIBOSOMAL PROTEIN RPS24 IN DIAMOND- BLACKFAN JRNL TITL 2 ANEMIA RESULTS IN A RIBOSOME BIOGENESIS DISORDER. JRNL REF HUM.MOL.GENET. V. 17 1253 2008 JRNL REFN ISSN 0964-6906 JRNL PMID 18230666 JRNL DOI 10.1093/HMG/DDN015 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 18584 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1001 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2159 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 117 REMARK 3 BIN FREE R VALUE : 0.3410 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1544 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.19000 REMARK 3 B22 (A**2) : -1.46000 REMARK 3 B33 (A**2) : 4.65000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.156 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.878 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1637 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1185 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2200 ; 1.722 ; 2.002 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2885 ; 0.904 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 188 ; 5.505 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 75 ;29.137 ;23.467 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 322 ;13.023 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;13.870 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 230 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1747 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 335 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 319 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1164 ; 0.208 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 798 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 882 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 84 ; 0.180 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 49 ; 0.307 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.270 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1138 ; 1.397 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1545 ; 1.523 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 803 ; 2.907 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 655 ; 3.674 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 8 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 8 3 REMARK 3 1 B 2 B 8 3 REMARK 3 2 A 16 A 23 3 REMARK 3 2 B 16 B 23 3 REMARK 3 3 A 31 A 37 3 REMARK 3 3 B 31 B 37 3 REMARK 3 4 A 46 A 55 3 REMARK 3 4 B 46 B 55 3 REMARK 3 5 A 67 A 73 3 REMARK 3 5 B 67 B 73 3 REMARK 3 6 A 77 A 79 3 REMARK 3 6 B 77 B 79 3 REMARK 3 7 A 81 A 83 3 REMARK 3 7 B 81 B 83 3 REMARK 3 8 A 85 A 87 3 REMARK 3 8 B 85 B 87 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 TIGHT POSITIONAL 1 A (A): 284 ; 0.16 ; 0.30 REMARK 3 LOOSE POSITIONAL 1 A (A): 442 ; 0.39 ; 1.60 REMARK 3 TIGHT THERMAL 1 A (A**2): 284 ; 0.17 ; 0.30 REMARK 3 LOOSE THERMAL 1 A (A**2): 442 ; 0.93 ; 2.30 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -3 A 93 REMARK 3 ORIGIN FOR THE GROUP (A): 47.2546 7.9119 34.0201 REMARK 3 T TENSOR REMARK 3 T11: -0.0644 T22: -0.0995 REMARK 3 T33: -0.2041 T12: 0.0044 REMARK 3 T13: -0.0013 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 4.9655 L22: 3.6370 REMARK 3 L33: 1.3450 L12: -1.1058 REMARK 3 L13: -0.0514 L23: -0.6127 REMARK 3 S TENSOR REMARK 3 S11: 0.0833 S12: -0.3320 S13: 0.1113 REMARK 3 S21: 0.2331 S22: -0.0203 S23: -0.1473 REMARK 3 S31: -0.0844 S32: 0.0855 S33: -0.0630 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 94 REMARK 3 ORIGIN FOR THE GROUP (A): 50.0553 23.4526 16.2133 REMARK 3 T TENSOR REMARK 3 T11: -0.1111 T22: -0.1026 REMARK 3 T33: -0.0951 T12: -0.0103 REMARK 3 T13: 0.0054 T23: 0.0475 REMARK 3 L TENSOR REMARK 3 L11: 5.4224 L22: 3.1361 REMARK 3 L33: 1.9112 L12: -1.3509 REMARK 3 L13: 1.1374 L23: -1.1484 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: 0.2486 S13: -0.1290 REMARK 3 S21: -0.1683 S22: -0.1311 S23: -0.1252 REMARK 3 S31: 0.1520 S32: 0.3364 S33: 0.1544 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. REMARK 4 REMARK 4 2V94 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-AUG-07. REMARK 100 THE PDBE ID CODE IS EBI-33544. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13468 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.90 REMARK 200 RESOLUTION RANGE LOW (A) : 50.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 5.3 REMARK 200 R MERGE (I) : 0.06 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.30 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.7 REMARK 200 R MERGE FOR SHELL (I) : 0.31 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.80 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM NA ACETATE 40% PEG 400 REMARK 280 185MM MGCL2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.40500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.81500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.40500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.81500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 GLU A 94 REMARK 465 LYS A 95 REMARK 465 LYS A 96 REMARK 465 GLU A 97 REMARK 465 GLY A 98 REMARK 465 GLU A 99 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 PHE B -3 REMARK 465 MSE B -2 REMARK 465 LEU B -1 REMARK 465 GLU B 0 REMARK 465 LYS B 95 REMARK 465 LYS B 96 REMARK 465 GLU B 97 REMARK 465 GLY B 98 REMARK 465 GLU B 99 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 93 CA C O CB CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 75 O HOH B 2046 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 84 OE1 GLU A 84 2655 1.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 90 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 90 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 89 -29.19 -38.88 REMARK 500 HIS B 25 62.57 -150.35 REMARK 500 REMARK 500 REMARK: NULL DBREF 2V94 A -7 0 PDB 2V94 2V94 -7 0 DBREF 2V94 A 1 99 UNP Q9UY20 RS24_PYRAB 1 99 DBREF 2V94 B -7 0 PDB 2V94 2V94 -7 0 DBREF 2V94 B 1 99 UNP Q9UY20 RS24_PYRAB 1 99 SEQRES 1 A 107 GLU ASN LEU TYR PHE MSE LEU GLU MSE GLU ILE LYS ILE SEQRES 2 A 107 THR GLU VAL LYS GLU ASN LYS LEU ILE GLY ARG LYS GLU SEQRES 3 A 107 ILE TYR PHE GLU ILE TYR HIS PRO GLY GLU PRO THR PRO SEQRES 4 A 107 SER ARG LYS ASP VAL LYS GLY LYS LEU VAL ALA MSE LEU SEQRES 5 A 107 ASP LEU ASN PRO GLU THR THR VAL ILE GLN TYR ILE ARG SEQRES 6 A 107 SER TYR PHE GLY SER TYR LYS SER LYS GLY TYR ALA LYS SEQRES 7 A 107 TYR TYR TYR ASP LYS ASP ARG MSE LEU TYR ILE GLU PRO SEQRES 8 A 107 GLU TYR ILE LEU ILE ARG ASP GLY ILE ILE GLU LYS LYS SEQRES 9 A 107 GLU GLY GLU SEQRES 1 B 107 GLU ASN LEU TYR PHE MSE LEU GLU MSE GLU ILE LYS ILE SEQRES 2 B 107 THR GLU VAL LYS GLU ASN LYS LEU ILE GLY ARG LYS GLU SEQRES 3 B 107 ILE TYR PHE GLU ILE TYR HIS PRO GLY GLU PRO THR PRO SEQRES 4 B 107 SER ARG LYS ASP VAL LYS GLY LYS LEU VAL ALA MSE LEU SEQRES 5 B 107 ASP LEU ASN PRO GLU THR THR VAL ILE GLN TYR ILE ARG SEQRES 6 B 107 SER TYR PHE GLY SER TYR LYS SER LYS GLY TYR ALA LYS SEQRES 7 B 107 TYR TYR TYR ASP LYS ASP ARG MSE LEU TYR ILE GLU PRO SEQRES 8 B 107 GLU TYR ILE LEU ILE ARG ASP GLY ILE ILE GLU LYS LYS SEQRES 9 B 107 GLU GLY GLU MODRES 2V94 MSE A -2 MET SELENOMETHIONINE MODRES 2V94 MSE A 1 MET SELENOMETHIONINE MODRES 2V94 MSE A 43 MET SELENOMETHIONINE MODRES 2V94 MSE A 78 MET SELENOMETHIONINE MODRES 2V94 MSE B 1 MET SELENOMETHIONINE MODRES 2V94 MSE B 43 MET SELENOMETHIONINE MODRES 2V94 MSE B 78 MET SELENOMETHIONINE HET MSE A -2 8 HET MSE A 1 8 HET MSE A 43 8 HET MSE A 78 8 HET MSE B 1 8 HET MSE B 43 8 HET MSE B 78 8 HETNAM MSE SELENOMETHIONINE FORMUL 3 MSE 7(C5 H11 N O2 SE) FORMUL 4 HOH *96(H2 O) HELIX 1 1 SER A 32 ASP A 45 1 14 HELIX 2 2 ASN A 47 GLU A 49 5 3 HELIX 3 3 ASP A 74 GLU A 82 1 9 HELIX 4 4 PRO A 83 ASP A 90 1 8 HELIX 5 5 SER B 32 ASP B 45 1 14 HELIX 6 6 ASN B 47 GLU B 49 5 3 HELIX 7 7 ASP B 74 GLU B 82 1 9 HELIX 8 8 PRO B 83 ASP B 90 1 8 SHEET 1 AA 4 GLU A 2 ASN A 11 0 SHEET 2 AA 4 ARG A 16 TYR A 24 -1 O ARG A 16 N ASN A 11 SHEET 3 AA 4 LYS A 64 TYR A 72 -1 O SER A 65 N ILE A 23 SHEET 4 AA 4 THR A 51 ARG A 57 -1 O VAL A 52 N LYS A 70 SHEET 1 BA 4 GLU B 2 ASN B 11 0 SHEET 2 BA 4 ARG B 16 TYR B 24 -1 O ARG B 16 N ASN B 11 SHEET 3 BA 4 LYS B 64 TYR B 72 -1 O SER B 65 N ILE B 23 SHEET 4 BA 4 THR B 51 SER B 58 -1 O VAL B 52 N LYS B 70 LINK C PHE A -3 N MSE A -2 1555 1555 1.33 LINK C MSE A -2 N LEU A -1 1555 1555 1.33 LINK C GLU A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N GLU A 2 1555 1555 1.32 LINK C ALA A 42 N MSE A 43 1555 1555 1.33 LINK C MSE A 43 N LEU A 44 1555 1555 1.31 LINK C ARG A 77 N MSE A 78 1555 1555 1.32 LINK C MSE A 78 N LEU A 79 1555 1555 1.32 LINK C MSE B 1 N GLU B 2 1555 1555 1.34 LINK C ALA B 42 N MSE B 43 1555 1555 1.30 LINK C MSE B 43 N LEU B 44 1555 1555 1.32 LINK C ARG B 77 N MSE B 78 1555 1555 1.32 LINK C MSE B 78 N LEU B 79 1555 1555 1.33 CRYST1 66.810 85.630 42.110 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014968 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011678 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023747 0.00000 MASTER 407 0 7 8 8 0 0 6 0 0 0 18 END