HEADER TRANSCRIPTION 30-APR-07 2UZK TITLE CRYSTAL STRUCTURE OF THE HUMAN FOXO3A-DBD BOUND TO DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORKHEAD BOX PROTEIN O3A; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: DNA-BINDING DOMAIN, RESIDUES 158-253; COMPND 5 SYNONYM: FORKHEAD IN RHABDOMYOSARCOMA-LIKE 1, AF6Q21 COMPND 6 PROTEIN; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*CP*TP*AP*TP*GP*TP*AP*AP*AP*CP*AP*AP*C)-3'; COMPND 10 CHAIN: B, D; COMPND 11 SYNONYM: FOXO CONSENSUS BINDING SEQUENCE; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: 5'-D(*GP*TP*TP*GP*TP*TP*TP*AP*CP*AP*TP*AP*G)-3'; COMPND 14 CHAIN: E, F; COMPND 15 SYNONYM: FOXO CONSENSUS BINDING SEQUENCE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-21B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606 KEYWDS TRANSCRIPTION, TRANSCRIPTION REGULATION, CHROMOSOMAL KEYWDS 2 REARRANGEMENT, ACTIVATOR, APOPTOSIS, DNA-BINDING, KEYWDS 3 WINGED HELIX, PROTO-ONCOGENE, FORKHEAD TRANSCRIPTION FACTORS, KEYWDS 4 NUCLEAR PROTEIN, PHOSPHORYLATION, DNA-BINDING DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR K.-L.TSAI,Y.-J.SUN,C.-Y.HUANG,J.-Y.YANG,M.-C.HUNG, AUTHOR 2 C.-D.HSIAO REVDAT 3 22-MAY-13 2UZK 1 COMPND SOURCE KEYWDS JRNL REVDAT 3 2 REMARK VERSN FORMUL REVDAT 2 24-FEB-09 2UZK 1 VERSN REVDAT 1 13-MAY-08 2UZK 0 JRNL AUTH K.-L.TSAI,Y.-J.SUN,C.-Y.HUANG,J.-Y.YANG,M.-C.HUNG,C.-D.HSIAO JRNL TITL CRYSTAL STRUCTURE OF THE HUMAN FOXO3A-DBD/DNA COMPLEX JRNL TITL 2 SUGGESTS THE EFFECTS OF POST-TRANSLATIONAL MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 35 6984 2007 JRNL REFN ISSN 0305-1048 JRNL PMID 17940099 JRNL DOI 10.1093/NAR/GKM703 REMARK 2 REMARK 2 RESOLUTION. 2.7 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 25787.54 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 9125 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.3 REMARK 3 FREE R VALUE TEST SET COUNT : 488 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.7 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1273 REMARK 3 BIN R VALUE (WORKING SET) : 0.324 REMARK 3 BIN FREE R VALUE : 0.278 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.1 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 69 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.034 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1478 REMARK 3 NUCLEIC ACID ATOMS : 1054 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 209 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.57 REMARK 3 B22 (A**2) : 1.57 REMARK 3 B33 (A**2) : -3.13 REMARK 3 B12 (A**2) : 2.68 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.42 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.20 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 2.6 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 32.6 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.45 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.01 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.41 ; 2.00 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.08 ; 2.00 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.94 ; 2.50 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.283777 REMARK 3 BSOL : 247.326 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : DNA-RNA_REP.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RESIDUES 157 AND 1157 ARE MET AND REMARK 3 ALA, RESPECTIVELY. THESE TWO RESIDUES ARE GENERATED FORM REMARK 3 VECTOR, NOT THE WILD TYPE FOXO3A AMINO ACIDS. THE SIDE CHAINS REMARK 3 OF THESE RESIDUES 1242, 1243, 1245, 1246, AND 1247 IN CHAIN D REMARK 3 ARE DISAPPEARED. GLY RESIDUES ARE SUBSTITUTED FOR THESE REMARK 3 RESIDUES IN THIS MODEL. RESIDUES 1248-1253 IN CHAIN D ARE REMARK 3 DISORDERED, AND NOT DETERMINED IN THE MODEL. REMARK 4 REMARK 4 2UZK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-APR-07. REMARK 100 THE PDBE ID CODE IS EBI-32413. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9491 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.70 REMARK 200 RESOLUTION RANGE LOW (A) : 25.00 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.0 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 4.2 REMARK 200 R MERGE (I) : 0.05 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.20 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.5 REMARK 200 R MERGE FOR SHELL (I) : 0.42 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.50 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2C6Y REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 118.27233 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 236.54467 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 177.40850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 295.68083 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.13617 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.2 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.4 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG C 1249 REMARK 465 ARG C 1250 REMARK 465 ALA C 1251 REMARK 465 VAL C 1252 REMARK 465 SER C 1253 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET C1157 CG SD CE REMARK 470 LYS C1242 CB CG CD CE NZ REMARK 470 SER C1243 CB OG REMARK 470 LYS C1245 CB CG CD CE NZ REMARK 470 ALA C1246 CB REMARK 470 PRO C1247 CB CG CD REMARK 470 ARG C1248 CA C O CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 196 NE1 TRP A 206 2.15 REMARK 500 OE2 GLU A 226 NE ARG C 1222 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 245 CB LYS A 245 CG 0.184 REMARK 500 PRO A 247 C ARG A 248 N -0.165 REMARK 500 DC B 1 O3' DT B 2 P 0.128 REMARK 500 DT B 2 O3' DA B 3 P -0.074 REMARK 500 SER C1203 CA SER C1203 CB 0.114 REMARK 500 DG E 37 P DG E 37 O5' -0.083 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 201 N - CA - C ANGL. DEV. = 17.3 DEGREES REMARK 500 SER A 202 N - CA - C ANGL. DEV. = 18.4 DEGREES REMARK 500 GLY A 205 N - CA - C ANGL. DEV. = 16.1 DEGREES REMARK 500 LYS A 230 N - CA - C ANGL. DEV. = 17.5 DEGREES REMARK 500 LYS A 245 CD - CE - NZ ANGL. DEV. = 17.9 DEGREES REMARK 500 ALA A 251 N - CA - C ANGL. DEV. = -19.5 DEGREES REMARK 500 VAL A 252 CA - CB - CG1 ANGL. DEV. = -11.4 DEGREES REMARK 500 VAL A 252 CA - CB - CG2 ANGL. DEV. = 9.3 DEGREES REMARK 500 DT B 2 O5' - P - OP1 ANGL. DEV. = -9.1 DEGREES REMARK 500 DT B 2 O3' - P - OP1 ANGL. DEV. = 9.2 DEGREES REMARK 500 DT B 2 O3' - P - OP2 ANGL. DEV. = 9.2 DEGREES REMARK 500 DT B 2 C3' - O3' - P ANGL. DEV. = 9.0 DEGREES REMARK 500 SER C1161 N - CA - C ANGL. DEV. = 17.6 DEGREES REMARK 500 ASP C1196 N - CA - C ANGL. DEV. = 25.6 DEGREES REMARK 500 LYS C1197 N - CA - C ANGL. DEV. = 21.2 DEGREES REMARK 500 SER C1203 N - CA - CB ANGL. DEV. = -10.0 DEGREES REMARK 500 SER C1203 C - N - CA ANGL. DEV. = 28.1 DEGREES REMARK 500 PRO C1238 C - N - CA ANGL. DEV. = 54.9 DEGREES REMARK 500 PRO C1238 C - N - CD ANGL. DEV. = -56.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 191 105.81 43.83 REMARK 500 PRO A 192 -39.45 -29.48 REMARK 500 SER A 200 -162.72 -110.32 REMARK 500 SER A 202 108.97 75.71 REMARK 500 ALA A 204 -142.70 -54.15 REMARK 500 HIS A 217 -130.31 -72.32 REMARK 500 PRO A 238 104.31 25.74 REMARK 500 SER A 243 145.47 -38.60 REMARK 500 PRO A 247 83.37 -31.09 REMARK 500 ARG A 249 157.86 -13.63 REMARK 500 ARG A 250 87.70 87.17 REMARK 500 ALA A 251 -72.53 -119.70 REMARK 500 VAL A 252 179.48 149.10 REMARK 500 LEU C1160 110.35 51.47 REMARK 500 ASP C1196 153.52 -44.97 REMARK 500 LYS C1197 108.90 37.70 REMARK 500 ASP C1199 147.19 173.83 REMARK 500 SER C1200 -66.25 159.44 REMARK 500 SER C1203 97.04 89.44 REMARK 500 THR C1228 30.59 37.53 REMARK 500 PRO C1238 127.37 105.87 REMARK 500 LYS C1242 -45.42 163.02 REMARK 500 SER C1243 176.38 120.69 REMARK 500 LYS C1245 -18.35 -49.47 REMARK 500 ALA C1246 58.91 107.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU A 160 23.0 L L OUTSIDE RANGE REMARK 500 ASP A 196 24.6 L L OUTSIDE RANGE REMARK 500 ASN A 201 22.5 L L OUTSIDE RANGE REMARK 500 SER A 202 22.1 L L OUTSIDE RANGE REMARK 500 LEU A 216 24.0 L L OUTSIDE RANGE REMARK 500 LYS A 230 22.3 L L OUTSIDE RANGE REMARK 500 ARG A 249 24.7 L L OUTSIDE RANGE REMARK 500 VAL A 252 12.7 L L OUTSIDE RANGE REMARK 500 SER A 253 24.8 L L OUTSIDE RANGE REMARK 500 SER C1161 24.4 L L OUTSIDE RANGE REMARK 500 ASP C1196 18.3 L L OUTSIDE RANGE REMARK 500 LYS C1197 20.9 L L OUTSIDE RANGE REMARK 500 ASP C1199 19.6 L L OUTSIDE RANGE REMARK 500 PRO C1238 45.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL DBREF 2UZK A 157 157 PDB 2UZK 2UZK 157 157 DBREF 2UZK A 158 253 UNP O43524 FOXO3_HUMAN 158 253 DBREF 2UZK B 1 13 PDB 2UZK 2UZK 1 13 DBREF 2UZK C 1157 1157 PDB 2UZK 2UZK 1157 1157 DBREF 2UZK C 1158 1253 UNP O43524 FOXO3_HUMAN 158 253 DBREF 2UZK D 1001 1013 PDB 2UZK 2UZK 1001 1013 DBREF 2UZK E 25 37 PDB 2UZK 2UZK 25 37 DBREF 2UZK F 1025 1037 PDB 2UZK 2UZK 1025 1037 SEQRES 1 A 97 MET GLY ASN LEU SER TYR ALA ASP LEU ILE THR ARG ALA SEQRES 2 A 97 ILE GLU SER SER PRO ASP LYS ARG LEU THR LEU SER GLN SEQRES 3 A 97 ILE TYR GLU TRP MET VAL ARG CYS VAL PRO TYR PHE LYS SEQRES 4 A 97 ASP LYS GLY ASP SER ASN SER SER ALA GLY TRP LYS ASN SEQRES 5 A 97 SER ILE ARG HIS ASN LEU SER LEU HIS SER ARG PHE MET SEQRES 6 A 97 ARG VAL GLN ASN GLU GLY THR GLY LYS SER SER TRP TRP SEQRES 7 A 97 ILE ILE ASN PRO ASP GLY GLY LYS SER GLY LYS ALA PRO SEQRES 8 A 97 ARG ARG ARG ALA VAL SER SEQRES 1 B 13 DC DT DA DT DG DT DA DA DA DC DA DA DC SEQRES 1 C 97 MET GLY ASN LEU SER TYR ALA ASP LEU ILE THR ARG ALA SEQRES 2 C 97 ILE GLU SER SER PRO ASP LYS ARG LEU THR LEU SER GLN SEQRES 3 C 97 ILE TYR GLU TRP MET VAL ARG CYS VAL PRO TYR PHE LYS SEQRES 4 C 97 ASP LYS GLY ASP SER ASN SER SER ALA GLY TRP LYS ASN SEQRES 5 C 97 SER ILE ARG HIS ASN LEU SER LEU HIS SER ARG PHE MET SEQRES 6 C 97 ARG VAL GLN ASN GLU GLY THR GLY LYS SER SER TRP TRP SEQRES 7 C 97 ILE ILE ASN PRO ASP GLY GLY LYS SER GLY LYS ALA PRO SEQRES 8 C 97 ARG ARG ARG ALA VAL SER SEQRES 1 D 13 DC DT DA DT DG DT DA DA DA DC DA DA DC SEQRES 1 E 13 DG DT DT DG DT DT DT DA DC DA DT DA DG SEQRES 1 F 13 DG DT DT DG DT DT DT DA DC DA DT DA DG FORMUL 7 HOH *209(H2 O) HELIX 1 1 SER A 161 ILE A 170 1 10 HELIX 2 2 THR A 179 CYS A 190 1 12 HELIX 3 3 GLY A 205 HIS A 217 1 13 HELIX 4 4 SER C 1161 SER C 1173 1 13 HELIX 5 5 THR C 1179 VAL C 1191 1 13 HELIX 6 6 GLY C 1205 HIS C 1217 1 13 SHEET 1 AA 5 TRP A 233 ILE A 236 0 SHEET 2 AA 5 PHE A 220 ASN A 225 -1 O MET A 221 N ILE A 235 SHEET 3 AA 5 PHE C1220 GLN C1224 -1 N GLN C1224 O GLN A 224 SHEET 4 AA 5 SER C1232 ILE C1236 -1 O TRP C1233 N VAL C1223 SHEET 5 AA 5 ARG C1177 LEU C1178 -1 O LEU C1178 N TRP C1234 CRYST1 41.964 41.964 354.817 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023830 0.013758 0.000000 0.00000 SCALE2 0.000000 0.027516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002818 0.00000 MASTER 413 0 0 6 5 0 0 6 0 0 0 20 END