HEADER HYDROLASE 07-MAR-07 2UUW TITLE 2.75 ANGSTROM STRUCTURE OF THE D347G D348G MUTANT STRUCTURE OF SAPPORO TITLE 2 VIRUS RDRP POLYMERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RNA POLYMERASE, RESIDUES 1135-1649; COMPND 5 SYNONYM: SAPOVIRUS RNA-DEPENDANT RNA-POLYMERASE; COMPND 6 EC: 2.7.7.48; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SAPPORO VIRUS; SOURCE 3 ORGANISM_TAXID: 95342; SOURCE 4 STRAIN: SAPPORO; SOURCE 5 VARIANT: DRESDEN ISOLATE; SOURCE 6 TISSUE: INTESTINE; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET M11; SOURCE 11 OTHER_DETAILS: FROM DRESDEN CALICI-LABORATORY KEYWDS NUCLEOTIDE-BINDING, NUCLEOTIDYLTRANSFERASE, COVALENT PROTEIN-RNA KEYWDS 2 LINKAGE, RNA ELONGATION, TRANSFERASE ACTIVITY, CAPSID PROTEIN, RNA KEYWDS 3 REPLICATION, STRUCTURAL PROTEIN, PROTEASE, HELICASE, HYDROLASE, KEYWDS 4 TRANSFERASE, RNA-DIRECTED RNA POLYMERASE, POLYPROTEIN, ATP-BINDING, KEYWDS 5 THIOL PROTEASE EXPDTA X-RAY DIFFRACTION AUTHOR S.FULLERTON,I.ROBEL,L.SCHULDT,J.GEBHARDT,P.TUCKER,J.ROHAYEM REVDAT 5 24-JUL-19 2UUW 1 REMARK REVDAT 4 12-MAR-14 2UUW 1 SOURCE KEYWDS REMARK VERSN REVDAT 4 2 1 FORMUL REVDAT 3 24-FEB-09 2UUW 1 VERSN REVDAT 2 30-OCT-07 2UUW 1 AUTHOR JRNL REVDAT 1 01-MAY-07 2UUW 0 JRNL AUTH S.FULLERTON,I.ROBEL,L.SCHULDT,J.GEBHARDT,P.TUCKER,J.ROHAYEM JRNL TITL THE 2.76 ANGSTROM RESOLUTION STRUCTURE OF THE D347G D348G JRNL TITL 2 MUTANT STRUCTURE OF SAPPORO VIRUS RDRP POLYMERASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.73 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 12761 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 666 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.83 REMARK 3 REFLECTION IN BIN (WORKING SET) : 807 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 43 REMARK 3 BIN FREE R VALUE : 0.2540 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3780 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 122 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.03000 REMARK 3 B22 (A**2) : 0.04000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.447 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.349 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.114 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.847 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.770 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3878 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5293 ; 1.168 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 488 ; 7.071 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 163 ;38.334 ;23.865 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 604 ;19.153 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ; 9.737 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 595 ; 0.132 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2967 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1907 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2667 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 163 ; 0.131 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 68 ; 0.176 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.179 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2490 ; 0.255 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3961 ; 0.457 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1570 ; 0.446 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1332 ; 0.770 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. REMARK 4 REMARK 4 2UUW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAR-07. REMARK 100 THE DEPOSITION ID IS D_1290031792. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8142 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13862 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.12000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 2CKW REMARK 200 REMARK 200 REMARK: NONE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.00600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.72500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.69850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.72500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.00600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.69850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 1481 TO GLY REMARK 400 ENGINEERED RESIDUE IN CHAIN A, ASP 1482 TO GLY REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 377 REMARK 465 ALA A 378 REMARK 465 ASP A 379 REMARK 465 LYS A 380 REMARK 465 SER A 381 REMARK 465 ASP A 382 REMARK 465 ALA A 383 REMARK 465 PRO A 498 REMARK 465 ASP A 499 REMARK 465 PRO A 500 REMARK 465 VAL A 501 REMARK 465 GLY A 502 REMARK 465 HIS A 503 REMARK 465 THR A 504 REMARK 465 GLU A 505 REMARK 465 GLY A 506 REMARK 465 THR A 507 REMARK 465 HIS A 508 REMARK 465 LYS A 509 REMARK 465 ILE A 510 REMARK 465 VAL A 511 REMARK 465 PHE A 512 REMARK 465 GLU A 513 REMARK 465 MET A 514 REMARK 465 GLU A 515 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 49 CG LYS A 51 1.86 REMARK 500 O GLY A 49 CB LYS A 51 2.11 REMARK 500 OG1 THR A 400 O GLY A 403 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 49 C ASP A 50 N 0.276 REMARK 500 VAL A 497 CB VAL A 497 CG2 -0.165 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 49 CA - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 40 -6.51 -145.07 REMARK 500 ASP A 50 105.70 -40.53 REMARK 500 ARG A 52 27.65 163.86 REMARK 500 TYR A 53 -125.25 -176.29 REMARK 500 THR A 54 78.81 95.01 REMARK 500 GLU A 133 14.90 56.25 REMARK 500 PRO A 211 44.21 -96.57 REMARK 500 PRO A 214 -9.97 -53.74 REMARK 500 ASP A 222 46.70 -106.43 REMARK 500 ASN A 288 -129.35 48.35 REMARK 500 THR A 333 -76.15 -63.04 REMARK 500 CYS A 349 110.67 150.10 REMARK 500 ASP A 409 126.56 -38.19 REMARK 500 ALA A 422 -132.10 -140.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 50 LYS A 51 -136.25 REMARK 500 ARG A 52 TYR A 53 -125.20 REMARK 500 GLU A 133 GLN A 134 142.70 REMARK 500 GLY A 348 CYS A 349 -47.47 REMARK 500 TRP A 491 PHE A 492 -139.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 49 10.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2CKW RELATED DB: PDB REMARK 900 THE 2.3 A RESOLUTION STRUCTURE OF THE SAPPORO VIRUS RNA DEPENDANT REMARK 900 RNA POLYMERASE. REMARK 900 RELATED ID: 2UUT RELATED DB: PDB REMARK 900 THE 2.4 ANGSTROM RESOLUTION STRUCTURE OF THE D346G MUTANT OF THE REMARK 900 SAPPORO VIRUS RDRP POLYMERASE DBREF 2UUW A 1 515 UNP Q69014 POLN_MANCV 1135 1649 SEQADV 2UUW GLY A 347 UNP Q69014 ASP 1481 ENGINEERED MUTATION SEQADV 2UUW GLY A 348 UNP Q69014 ASP 1482 ENGINEERED MUTATION SEQRES 1 A 515 ASP GLU PHE GLN TRP LYS GLY LEU PRO VAL VAL LYS SER SEQRES 2 A 515 GLY LEU ASP VAL GLY GLY MET PRO THR GLY THR ARG TYR SEQRES 3 A 515 HIS ARG SER PRO ALA TRP PRO GLU GLU GLN PRO GLY GLU SEQRES 4 A 515 THR HIS ALA PRO ALA PRO PHE GLY SER GLY ASP LYS ARG SEQRES 5 A 515 TYR THR PHE SER GLN THR GLU MET LEU VAL ASN GLY LEU SEQRES 6 A 515 LYS PRO TYR THR GLU PRO THR ALA GLY VAL PRO PRO GLN SEQRES 7 A 515 LEU LEU SER ARG ALA VAL THR HIS VAL ARG SER TYR ILE SEQRES 8 A 515 GLU THR ILE ILE GLY THR HIS ARG SER PRO VAL LEU THR SEQRES 9 A 515 TYR HIS GLN ALA CYS GLU LEU LEU GLU ARG THR THR SER SEQRES 10 A 515 CYS GLY PRO PHE VAL GLN GLY LEU LYS GLY ASP TYR TRP SEQRES 11 A 515 ASP GLU GLU GLN GLN GLN TYR THR GLY VAL LEU ALA ASN SEQRES 12 A 515 HIS LEU GLU GLN ALA TRP ASP LYS ALA ASN LYS GLY ILE SEQRES 13 A 515 ALA PRO ARG ASN ALA TYR LYS LEU ALA LEU LYS ASP GLU SEQRES 14 A 515 LEU ARG PRO ILE GLU LYS ASN LYS ALA GLY LYS ARG ARG SEQRES 15 A 515 LEU LEU TRP GLY CYS ASP ALA ALA THR THR LEU ILE ALA SEQRES 16 A 515 THR ALA ALA PHE LYS ALA VAL ALA THR ARG LEU GLN VAL SEQRES 17 A 515 VAL THR PRO MET THR PRO VAL ALA VAL GLY ILE ASN MET SEQRES 18 A 515 ASP SER VAL GLN MET GLN VAL MET ASN ASP SER LEU LYS SEQRES 19 A 515 GLY GLY VAL LEU TYR CYS LEU ASP TYR SER LYS TRP ASP SEQRES 20 A 515 SER THR GLN ASN PRO ALA VAL THR ALA ALA SER LEU ALA SEQRES 21 A 515 ILE LEU GLU ARG PHE ALA GLU PRO HIS PRO ILE VAL SER SEQRES 22 A 515 CYS ALA ILE GLU ALA LEU SER SER PRO ALA GLU GLY TYR SEQRES 23 A 515 VAL ASN ASP ILE LYS PHE VAL THR ARG GLY GLY LEU PRO SEQRES 24 A 515 SER GLY MET PRO PHE THR SER VAL VAL ASN SER ILE ASN SEQRES 25 A 515 HIS MET ILE TYR VAL ALA ALA ALA ILE LEU GLN ALA TYR SEQRES 26 A 515 GLU SER HIS ASN VAL PRO TYR THR GLY ASN VAL PHE GLN SEQRES 27 A 515 VAL GLU THR ILE HIS THR TYR GLY GLY GLY CYS MET TYR SEQRES 28 A 515 SER VAL CYS PRO ALA THR ALA SER ILE PHE HIS THR VAL SEQRES 29 A 515 LEU ALA ASN LEU THR SER TYR GLY LEU LYS PRO THR ALA SEQRES 30 A 515 ALA ASP LYS SER ASP ALA ILE LYS PRO THR ASN THR PRO SEQRES 31 A 515 VAL PHE LEU LYS ARG THR PHE THR GLN THR PRO HIS GLY SEQRES 32 A 515 ILE ARG ALA LEU LEU ASP ILE THR SER ILE THR ARG GLN SEQRES 33 A 515 PHE TYR TRP LEU LYS ALA ASN ARG THR SER ASP PRO SER SEQRES 34 A 515 SER PRO PRO ALA PHE ASP ARG GLN ALA ARG SER ALA GLN SEQRES 35 A 515 LEU GLU ASN ALA LEU ALA TYR ALA SER GLN HIS GLY PRO SEQRES 36 A 515 VAL MET PHE ASP THR VAL ARG GLN ILE ALA ILE LYS THR SEQRES 37 A 515 ALA GLN GLY GLU GLY LEU VAL LEU VAL ASN THR ASN TYR SEQRES 38 A 515 ASP GLN ALA LEU ALA THR TYR ASN ALA TRP PHE ILE GLY SEQRES 39 A 515 GLY THR VAL PRO ASP PRO VAL GLY HIS THR GLU GLY THR SEQRES 40 A 515 HIS LYS ILE VAL PHE GLU MET GLU FORMUL 2 HOH *122(H2 O) HELIX 1 1 SER A 56 LYS A 66 1 11 HELIX 2 2 PRO A 67 THR A 69 5 3 HELIX 3 3 PRO A 76 GLY A 96 1 21 HELIX 4 4 THR A 104 LEU A 111 1 8 HELIX 5 5 LYS A 126 ASP A 128 5 3 HELIX 6 6 THR A 138 LYS A 154 1 17 HELIX 7 7 ILE A 173 ALA A 178 1 6 HELIX 8 8 ASP A 188 VAL A 209 1 22 HELIX 9 9 SER A 223 LYS A 234 1 12 HELIX 10 10 TRP A 246 GLN A 250 5 5 HELIX 11 11 ASN A 251 ARG A 264 1 14 HELIX 12 12 HIS A 269 SER A 281 1 13 HELIX 13 13 PHE A 304 HIS A 328 1 25 HELIX 14 14 ASN A 335 GLU A 340 1 6 HELIX 15 15 CYS A 354 ILE A 360 1 7 HELIX 16 16 ILE A 360 TYR A 371 1 12 HELIX 17 17 ASP A 409 TYR A 418 1 10 HELIX 18 18 ASP A 435 GLN A 452 1 18 HELIX 19 19 GLY A 454 GLY A 473 1 20 HELIX 20 20 ASN A 480 ILE A 493 1 14 SHEET 1 AA 6 PHE A 3 TRP A 5 0 SHEET 2 AA 6 LEU A 8 LYS A 12 -1 O LEU A 8 N TRP A 5 SHEET 3 AA 6 ILE A 290 VAL A 293 -1 O LYS A 291 N VAL A 11 SHEET 4 AA 6 GLU A 284 VAL A 287 -1 O GLY A 285 N PHE A 292 SHEET 5 AA 6 ALA A 161 LEU A 166 1 O TYR A 162 N TYR A 286 SHEET 6 AA 6 LEU A 183 CYS A 187 -1 O LEU A 184 N ALA A 165 SHEET 1 AB 2 THR A 24 ARG A 28 0 SHEET 2 AB 2 TRP A 419 THR A 425 -1 O LEU A 420 N HIS A 27 SHEET 1 AC 2 HIS A 41 PRO A 43 0 SHEET 2 AC 2 LEU A 170 PRO A 172 -1 O ARG A 171 N ALA A 42 SHEET 1 AD 2 TRP A 130 ASP A 131 0 SHEET 2 AD 2 GLN A 136 TYR A 137 -1 O GLN A 136 N ASP A 131 SHEET 1 AE 3 VAL A 237 ASP A 242 0 SHEET 2 AE 3 GLY A 348 VAL A 353 -1 O CYS A 349 N LEU A 241 SHEET 3 AE 3 THR A 341 TYR A 345 -1 O THR A 341 N SER A 352 SHEET 1 AF 3 VAL A 391 PHE A 392 0 SHEET 2 AF 3 ARG A 395 THR A 398 -1 O ARG A 395 N PHE A 392 SHEET 3 AF 3 ARG A 405 LEU A 408 -1 O ARG A 405 N THR A 398 CISPEP 1 THR A 210 PRO A 211 0 -5.42 CRYST1 58.012 91.397 95.450 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017238 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010941 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010477 0.00000 MASTER 391 0 0 20 18 0 0 6 0 0 0 40 END