HEADER PROTEIN BINDING 09-JUN-11 2RRU TITLE SOLUTION STRUCTURE OF THE UBA OMAIN OF P62 AND ITS INTERACTION WITH TITLE 2 UBIQUITIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEQUESTOSOME-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UBA DOMAIN (UNP RESIDUES 393-438); COMPND 5 SYNONYM: STONE14, UBIQUITIN-BINDING PROTEIN P62; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SQSTM1, A170, STAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX-6P1 KEYWDS UBIQUITIN, UBA DOMAIN, P62/SQSTM1, AUTOPHAGY, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR S.ISOGAI,D.MORIMOTO,K.ARITA,S.UNZAI,T.TENNO,J.HASEGAWA,Y.SOU, AUTHOR 2 M.KOMATSU,K.TANAKA,M.SHIRAKAWA,H.TOCHIO REVDAT 1 29-JUN-11 2RRU 0 JRNL AUTH S.ISOGAI,D.MORIMOTO,K.ARITA,S.UNZAI,T.TENNO,Y.SOU,M.KOMATSU, JRNL AUTH 2 K.TANAKA,M.SHIRAKAWA,H.TOCHIO JRNL TITL CRYSTAL STRUCTURE OF THE UBA OMAIN OF P62 AND ITS JRNL TITL 2 INTERACTION WITH UBIQUITIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RRU COMPLIES WITH FORMAT V. 3.20, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-JUN-11. REMARK 100 THE RCSB ID CODE IS RCSB150211. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 0.025 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-95% 13C; U-95% 15N] REMARK 210 P62/SEQUESTOSOME-1-1, 2.4 MM REMARK 210 UBIQUITIN-2, 10 % [U-2H] D2O-3, REMARK 210 20 MM POTASSIUM PHOSPHATE-4, 5 MM REMARK 210 POTASSIUM CHLORIDE-5, 1 MM EDTA- REMARK 210 6, 10 % D2O-7, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D REMARK 210 HNCO; 3D HBHA(CO)NH; 3D H(CCO)N REMARK 210 3D C(CO)NH; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY; 3D HN(CA)CO REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, SPARKY 3.113, REMARK 210 NMRPIPE, TOPSPIN, CANDID, ATNOS, REMARK 210 CARA REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING, DGSA-DISTANCE GEOMETRY REMARK 210 SIMULATE ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENER REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 2 PRO A 2 96.71 -69.78 REMARK 500 2 LEU A 3 79.69 53.67 REMARK 500 2 SER A 5 51.48 -98.35 REMARK 500 2 SER A 51 -67.45 -177.66 REMARK 500 3 GLU A 6 174.69 62.99 REMARK 500 3 SER A 51 -176.96 -178.47 REMARK 500 4 PRO A 2 -179.06 -69.80 REMARK 500 4 SER A 51 -74.20 -110.25 REMARK 500 5 LEU A 3 176.75 60.79 REMARK 500 5 GLU A 26 109.87 -51.96 REMARK 500 5 TYR A 50 133.55 -171.72 REMARK 500 5 SER A 51 -60.67 -177.08 REMARK 500 6 SER A 51 -74.25 -177.02 REMARK 500 6 LYS A 52 -42.31 -131.94 REMARK 500 7 LEU A 3 107.71 -177.68 REMARK 500 7 TYR A 50 134.93 -170.90 REMARK 500 7 SER A 51 -74.28 -175.76 REMARK 500 7 LYS A 52 -41.51 -132.32 REMARK 500 8 SER A 5 72.04 -102.20 REMARK 500 8 ALA A 7 -169.58 -121.81 REMARK 500 8 TYR A 50 141.22 -173.28 REMARK 500 8 SER A 51 -74.45 -177.65 REMARK 500 9 GLU A 6 -178.23 -66.96 REMARK 500 9 ALA A 7 -169.48 -124.42 REMARK 500 9 SER A 51 -61.51 -177.60 REMARK 500 10 LEU A 3 146.74 -178.73 REMARK 500 10 SER A 5 -70.21 -89.11 REMARK 500 10 GLU A 6 170.18 61.74 REMARK 500 10 TYR A 50 133.49 -172.37 REMARK 500 10 SER A 51 -70.00 -178.30 REMARK 500 11 TYR A 50 -42.25 -152.33 REMARK 500 11 LYS A 52 -53.70 -140.50 REMARK 500 12 LEU A 3 132.88 -170.84 REMARK 500 12 TYR A 50 -44.05 -177.46 REMARK 500 12 SER A 51 -175.66 -62.40 REMARK 500 12 LYS A 52 -66.27 -133.07 REMARK 500 14 LEU A 3 91.96 59.47 REMARK 500 14 TYR A 50 133.27 -171.93 REMARK 500 14 SER A 51 -69.92 -177.29 REMARK 500 15 TYR A 50 133.64 -172.02 REMARK 500 15 SER A 51 -60.92 -176.88 REMARK 500 16 LEU A 3 74.15 52.00 REMARK 500 16 TYR A 50 -40.40 -156.11 REMARK 500 17 GLU A 6 168.86 62.96 REMARK 500 17 TYR A 50 133.66 -174.29 REMARK 500 17 SER A 51 -168.91 -177.34 REMARK 500 17 LYS A 52 -66.79 -103.46 REMARK 500 18 TYR A 50 -39.76 -172.81 REMARK 500 18 SER A 51 151.37 64.58 REMARK 500 19 LEU A 3 166.15 62.83 REMARK 500 REMARK 500 THIS ENTRY HAS 55 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3B0F RELATED DB: PDB REMARK 900 RELATED ID: 11443 RELATED DB: BMRB DBREF 2RRU A 6 53 UNP Q64337 SQSTM_MOUSE 391 438 SEQADV 2RRU GLY A 1 UNP Q64337 EXPRESSION TAG SEQADV 2RRU PRO A 2 UNP Q64337 EXPRESSION TAG SEQADV 2RRU LEU A 3 UNP Q64337 EXPRESSION TAG SEQADV 2RRU GLY A 4 UNP Q64337 EXPRESSION TAG SEQADV 2RRU SER A 5 UNP Q64337 EXPRESSION TAG SEQRES 1 A 53 GLY PRO LEU GLY SER GLU ALA ASP PRO ARG LEU ILE GLU SEQRES 2 A 53 SER LEU SER GLN MET LEU SER MET GLY PHE SER ASP GLU SEQRES 3 A 53 GLY GLY TRP LEU THR ARG LEU LEU GLN THR LYS ASN TYR SEQRES 4 A 53 ASP ILE GLY ALA ALA LEU ASP THR ILE GLN TYR SER LYS SEQRES 5 A 53 HIS HELIX 1 1 ASP A 8 GLY A 22 1 15 HELIX 2 2 ARG A 32 LYS A 37 1 6 HELIX 3 3 ALA A 43 THR A 47 5 5 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 149 0 0 3 0 0 0 6 0 0 0 5 END