HEADER DNA 15-MAY-08 2RPE TITLE HSRAD51-BOUND SSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*DTP*DAP*DCP*DG)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: NUCLEOTIDE SYNTHESIS KEYWDS SSDNA, RAD51, RECA, DNA EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR T.MASUDA,Y.ITO,T.SHIBATA,T.MIKAWA REVDAT 3 26-FEB-20 2RPE 1 REMARK REVDAT 2 05-JAN-10 2RPE 1 JRNL REVDAT 1 26-MAY-09 2RPE 0 JRNL AUTH T.MASUDA,Y.ITO,T.TERADA,T.SHIBATA,T.MIKAWA JRNL TITL A NON-CANONICAL DNA STRUCTURE ENABLES HOMOLOGOUS JRNL TITL 2 RECOMBINATION IN VARIOUS GENETIC SYSTEMS JRNL REF J.BIOL.CHEM. V. 284 30230 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19729448 JRNL DOI 10.1074/JBC.M109.043810 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH, X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE (X-PLOR NIH) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2RPE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-MAY-08. REMARK 100 THE DEPOSITION ID IS D_1000150124. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.1 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM DNA, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 DT A 1 C2' DT A 1 C1' 0.072 REMARK 500 1 DT A 1 C6 DT A 1 N1 -0.046 REMARK 500 1 DA A 2 C8 DA A 2 N9 -0.067 REMARK 500 1 DG A 4 C8 DG A 4 N9 -0.066 REMARK 500 2 DT A 1 C2' DT A 1 C1' 0.073 REMARK 500 2 DT A 1 C6 DT A 1 N1 -0.047 REMARK 500 2 DA A 2 C8 DA A 2 N9 -0.067 REMARK 500 2 DG A 4 C8 DG A 4 N9 -0.064 REMARK 500 3 DT A 1 C2' DT A 1 C1' 0.073 REMARK 500 3 DT A 1 C6 DT A 1 N1 -0.047 REMARK 500 3 DA A 2 C8 DA A 2 N9 -0.068 REMARK 500 3 DC A 3 N1 DC A 3 C6 -0.036 REMARK 500 3 DG A 4 C8 DG A 4 N9 -0.064 REMARK 500 4 DT A 1 C2' DT A 1 C1' 0.073 REMARK 500 4 DT A 1 C6 DT A 1 N1 -0.046 REMARK 500 4 DA A 2 C8 DA A 2 N9 -0.068 REMARK 500 4 DG A 4 C8 DG A 4 N9 -0.065 REMARK 500 5 DT A 1 C2' DT A 1 C1' 0.073 REMARK 500 5 DT A 1 C6 DT A 1 N1 -0.046 REMARK 500 5 DA A 2 C8 DA A 2 N9 -0.067 REMARK 500 5 DG A 4 C8 DG A 4 N9 -0.062 REMARK 500 6 DT A 1 C2' DT A 1 C1' 0.073 REMARK 500 6 DT A 1 C6 DT A 1 N1 -0.045 REMARK 500 6 DA A 2 C8 DA A 2 N9 -0.068 REMARK 500 6 DG A 4 C8 DG A 4 N9 -0.065 REMARK 500 7 DT A 1 C2' DT A 1 C1' 0.073 REMARK 500 7 DT A 1 C6 DT A 1 N1 -0.046 REMARK 500 7 DA A 2 C8 DA A 2 N9 -0.066 REMARK 500 7 DG A 4 C8 DG A 4 N9 -0.065 REMARK 500 8 DT A 1 C2' DT A 1 C1' 0.073 REMARK 500 8 DT A 1 C6 DT A 1 N1 -0.047 REMARK 500 8 DA A 2 C8 DA A 2 N9 -0.067 REMARK 500 8 DC A 3 N1 DC A 3 C6 -0.037 REMARK 500 8 DG A 4 C8 DG A 4 N9 -0.065 REMARK 500 9 DT A 1 C2' DT A 1 C1' 0.075 REMARK 500 9 DT A 1 C6 DT A 1 N1 -0.045 REMARK 500 9 DA A 2 C8 DA A 2 N9 -0.065 REMARK 500 9 DG A 4 C8 DG A 4 N9 -0.065 REMARK 500 10 DT A 1 C2' DT A 1 C1' 0.072 REMARK 500 10 DT A 1 C6 DT A 1 N1 -0.047 REMARK 500 10 DA A 2 C8 DA A 2 N9 -0.067 REMARK 500 10 DG A 4 C8 DG A 4 N9 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DT A 1 C6 - C5 - C7 ANGL. DEV. = -4.7 DEGREES REMARK 500 1 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 2 DT A 1 C6 - C5 - C7 ANGL. DEV. = -4.7 DEGREES REMARK 500 2 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 3 DT A 1 C6 - C5 - C7 ANGL. DEV. = -4.6 DEGREES REMARK 500 3 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 4 DT A 1 C6 - C5 - C7 ANGL. DEV. = -4.7 DEGREES REMARK 500 4 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 5 DT A 1 C6 - C5 - C7 ANGL. DEV. = -4.6 DEGREES REMARK 500 5 DC A 3 C6 - N1 - C2 ANGL. DEV. = 2.4 DEGREES REMARK 500 5 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 6 DT A 1 C6 - C5 - C7 ANGL. DEV. = -4.7 DEGREES REMARK 500 6 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 7 DT A 1 C6 - C5 - C7 ANGL. DEV. = -4.6 DEGREES REMARK 500 7 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 8 DT A 1 C6 - C5 - C7 ANGL. DEV. = -4.6 DEGREES REMARK 500 8 DA A 2 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 8 DC A 3 C6 - N1 - C2 ANGL. DEV. = 2.4 DEGREES REMARK 500 8 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 9 DT A 1 C6 - C5 - C7 ANGL. DEV. = -4.5 DEGREES REMARK 500 9 DA A 2 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 9 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 10 DT A 1 C6 - C5 - C7 ANGL. DEV. = -4.7 DEGREES REMARK 500 10 DG A 4 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 11046 RELATED DB: BMRB REMARK 900 RELATED ID: 2RPD RELATED DB: PDB REMARK 900 RELATED ID: 2RPF RELATED DB: PDB REMARK 900 RELATED ID: 2RPH RELATED DB: PDB DBREF 2RPE A 1 4 PDB 2RPE 2RPE 1 4 SEQRES 1 A 4 DT DA DC DG CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 172 0 0 0 0 0 0 6 0 0 0 1 END