HEADER TRANSFERASE/DNA 24-SEP-07 2RDJ TITLE SNAPSHOTS OF A Y-FAMILY DNA POLYMERASE IN REPLICATION: DPO4 IN APO AND TITLE 2 BINARY/TERNARY COMPLEX FORMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*DGP*DGP*DGP*DAP*DCP*DCP*DCP*DTP*DTP*DCP*DGP*DAP*DAP*DT)-3'); COMPND 4 CHAIN: C, E; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: DNA PRIMER STRAND; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*DTP*DTP*DAP*DTP*DTP*DCP*DGP*DAP*DAP*DGP*DGP*DGP*DTP*DCP*DCP*DC)- COMPND 10 3'); COMPND 11 CHAIN: D; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: DNA TEMPLATE STRAND FROM POLYPEPTIDE CHAIN A; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA (5'- COMPND 16 D(P*DTP*DAP*DTP*DTP*DCP*DGP*DAP*DAP*DGP*DGP*DGP*DTP*DCP*DCP*DC)-3'); COMPND 17 CHAIN: F; COMPND 18 ENGINEERED: YES; COMPND 19 OTHER_DETAILS: DNA TEMPLATE STRAND FROM POLYPEPTIDE CHAIN B; COMPND 20 MOL_ID: 4; COMPND 21 MOLECULE: DNA POLYMERASE IV; COMPND 22 CHAIN: A, B; COMPND 23 SYNONYM: POL IV; COMPND 24 EC: 2.7.7.7; COMPND 25 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES; SOURCE 5 MOL_ID: 3; SOURCE 6 SYNTHETIC: YES; SOURCE 7 MOL_ID: 4; SOURCE 8 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 9 STRAIN: P2; SOURCE 10 GENE: DBH, DPO4; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 12 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS DNA POLYMERASE, DNA-ENZYME COMPLEX, Y-FAMILY, DNA DAMAGE, DNA REPAIR, KEYWDS 2 DNA REPLICATION, DNA-BINDING, DNA-DIRECTED DNA POLYMERASE, KEYWDS 3 MAGNESIUM, METAL-BINDING, MUTATOR PROTEIN, NUCLEOTIDYLTRANSFERASE, KEYWDS 4 TRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.H.Y.WONG,H.LING REVDAT 5 11-OCT-17 2RDJ 1 REMARK REVDAT 4 13-JUL-11 2RDJ 1 VERSN REVDAT 3 24-FEB-09 2RDJ 1 VERSN REVDAT 2 01-JUL-08 2RDJ 1 REMARK REVDAT 1 24-JUN-08 2RDJ 0 JRNL AUTH J.H.WONG,K.A.FIALA,Z.SUO,H.LING JRNL TITL SNAPSHOTS OF A Y-FAMILY DNA POLYMERASE IN REPLICATION: JRNL TITL 2 SUBSTRATE-INDUCED CONFORMATIONAL TRANSITIONS AND JRNL TITL 3 IMPLICATIONS FOR FIDELITY OF DPO4. JRNL REF J.MOL.BIOL. V. 379 317 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18448122 JRNL DOI 10.1016/J.JMB.2008.03.038 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.11 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 51924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2660 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 199 REMARK 3 BIN FREE R VALUE : 0.3520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5486 REMARK 3 NUCLEIC ACID ATOMS : 1202 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.55000 REMARK 3 B22 (A**2) : -1.66000 REMARK 3 B33 (A**2) : -0.89000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.829 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6948 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9576 ; 1.502 ; 2.213 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 5.554 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;31.202 ;23.636 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1126 ;15.631 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;16.448 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1093 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4637 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2872 ; 0.200 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4645 ; 0.303 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 460 ; 0.154 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 8 ; 0.152 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 48 ; 0.151 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 12 ; 0.136 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3553 ; 0.678 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5520 ; 1.115 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4237 ; 1.744 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4056 ; 2.756 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2RDJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-07. REMARK 100 THE DEPOSITION ID IS D_1000044730. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRADED MULTILAYER (OSMIC) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51948 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1JX4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10-15% PEG3350, 0.2M CALCIUM ACETATE, REMARK 280 0.1M HEPES PH 7.0, 5% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 48.99650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.05450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.25500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.05450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.99650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.25500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS CHAIN A ALONE OR CHAIN B ALONE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 342 REMARK 465 ALA A 343 REMARK 465 ILE A 344 REMARK 465 GLY A 345 REMARK 465 LEU A 346 REMARK 465 ASP A 347 REMARK 465 LYS A 348 REMARK 465 PHE A 349 REMARK 465 PHE A 350 REMARK 465 ASP A 351 REMARK 465 THR A 352 REMARK 465 GLU B 342 REMARK 465 ALA B 343 REMARK 465 ILE B 344 REMARK 465 GLY B 345 REMARK 465 LEU B 346 REMARK 465 ASP B 347 REMARK 465 LYS B 348 REMARK 465 PHE B 349 REMARK 465 PHE B 350 REMARK 465 ASP B 351 REMARK 465 THR B 352 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC F 8 O3' DC F 8 C3' -0.040 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 4 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DA C 4 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 DC C 5 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 DC C 10 N1 - C1' - C2' ANGL. DEV. = 8.7 DEGREES REMARK 500 DA C 12 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DA C 13 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT D 3 O4' - C1' - N1 ANGL. DEV. = 2.4 DEGREES REMARK 500 DT D 3 N3 - C2 - O2 ANGL. DEV. = -3.7 DEGREES REMARK 500 DA D 10 C3' - O3' - P ANGL. DEV. = 8.2 DEGREES REMARK 500 DA D 11 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG D 12 O4' - C1' - N9 ANGL. DEV. = 9.9 DEGREES REMARK 500 DG D 13 O4' - C1' - N9 ANGL. DEV. = 5.2 DEGREES REMARK 500 DG D 14 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 DC D 16 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DC D 16 C3' - O3' - P ANGL. DEV. = 7.8 DEGREES REMARK 500 DC D 17 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC D 18 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG E 2 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG E 3 C5 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 DC E 5 O4' - C1' - N1 ANGL. DEV. = 5.4 DEGREES REMARK 500 DC E 5 N1 - C2 - O2 ANGL. DEV. = 3.8 DEGREES REMARK 500 DC E 7 C2 - N3 - C4 ANGL. DEV. = 3.5 DEGREES REMARK 500 DC E 10 O4' - C1' - N1 ANGL. DEV. = 5.9 DEGREES REMARK 500 DG E 11 O4' - C1' - N9 ANGL. DEV. = 6.7 DEGREES REMARK 500 DA E 12 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DA E 12 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 DT E 14 O4' - C1' - N1 ANGL. DEV. = 4.9 DEGREES REMARK 500 DT F 4 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT F 6 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DC F 8 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DA F 10 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DA F 11 C3' - O3' - P ANGL. DEV. = 7.2 DEGREES REMARK 500 DG F 12 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 DT F 15 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 10 58.63 26.53 REMARK 500 SER A 103 -171.75 -173.20 REMARK 500 SER A 145 -162.74 -168.39 REMARK 500 LYS A 196 0.47 -68.53 REMARK 500 ASN A 234 47.70 -157.84 REMARK 500 ASP A 277 -112.92 62.94 REMARK 500 TYR B 10 56.93 38.08 REMARK 500 ASN B 20 78.03 -152.14 REMARK 500 PHE B 37 -157.44 -163.90 REMARK 500 SER B 145 -160.90 -163.92 REMARK 500 ASN B 234 45.56 -154.24 REMARK 500 ASP B 277 -104.61 54.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 353 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DT E 14 OP1 REMARK 620 2 ASP B 7 OD1 77.0 REMARK 620 3 PHE B 8 O 147.2 77.0 REMARK 620 4 ASP B 105 OD2 79.0 82.0 77.9 REMARK 620 5 HOH B 368 O 76.3 70.5 112.9 146.4 REMARK 620 6 HOH E 26 O 93.8 170.8 111.5 96.1 107.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 353 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 7 OD1 REMARK 620 2 PHE A 8 O 87.1 REMARK 620 3 ASP A 105 OD2 94.8 99.0 REMARK 620 4 HOH A 426 O 79.0 84.6 172.7 REMARK 620 5 HOH C 25 O 74.7 161.8 82.8 91.8 REMARK 620 6 TMP A 355 O1P 172.6 92.6 92.5 93.7 105.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 354 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 181 O REMARK 620 2 ILE A 186 O 85.8 REMARK 620 3 HOH A 420 O 92.9 72.3 REMARK 620 4 HOH A 421 O 92.7 154.6 82.5 REMARK 620 5 HOH A 431 O 93.8 143.4 144.1 62.0 REMARK 620 6 HOH A 497 O 82.1 72.1 144.3 132.8 71.6 REMARK 620 7 HOH C 17 O 170.4 93.6 96.1 91.9 80.9 88.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 354 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 181 O REMARK 620 2 ILE B 186 O 89.5 REMARK 620 3 HOH B 406 O 91.1 70.6 REMARK 620 4 HOH B 402 O 92.4 148.4 140.8 REMARK 620 5 HOH E 15 O 178.4 90.1 87.4 88.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 353 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 354 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TMP A 355 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 356 DBREF 2RDJ C 1 14 PDB 2RDJ 2RDJ 1 14 DBREF 2RDJ D 3 18 PDB 2RDJ 2RDJ 1 16 DBREF 2RDJ E 1 14 PDB 2RDJ 2RDJ 1 14 DBREF 2RDJ F 4 18 PDB 2RDJ 2RDJ 1 15 DBREF 2RDJ A 1 352 UNP Q97W02 DPO42_SULSO 1 352 DBREF 2RDJ B 1 352 UNP Q97W02 DPO42_SULSO 1 352 SEQRES 1 C 14 DG DG DG DA DC DC DC DT DT DC DG DA DA SEQRES 2 C 14 DT SEQRES 1 D 16 DT DT DA DT DT DC DG DA DA DG DG DG DT SEQRES 2 D 16 DC DC DC SEQRES 1 E 14 DG DG DG DA DC DC DC DT DT DC DG DA DA SEQRES 2 E 14 DT SEQRES 1 F 15 DT DA DT DT DC DG DA DA DG DG DG DT DC SEQRES 2 F 15 DC DC SEQRES 1 A 352 MET ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 A 352 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 A 352 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 A 352 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 A 352 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 A 352 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 A 352 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 A 352 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 A 352 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 A 352 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 A 352 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 A 352 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 A 352 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 A 352 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 A 352 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 A 352 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 A 352 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 A 352 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 A 352 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 A 352 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 A 352 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 A 352 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 A 352 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 A 352 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 A 352 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 A 352 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 A 352 LYS PHE ILE GLU ALA ILE GLY LEU ASP LYS PHE PHE ASP SEQRES 28 A 352 THR SEQRES 1 B 352 MET ILE VAL LEU PHE VAL ASP PHE ASP TYR PHE TYR ALA SEQRES 2 B 352 GLN VAL GLU GLU VAL LEU ASN PRO SER LEU LYS GLY LYS SEQRES 3 B 352 PRO VAL VAL VAL CYS VAL PHE SER GLY ARG PHE GLU ASP SEQRES 4 B 352 SER GLY ALA VAL ALA THR ALA ASN TYR GLU ALA ARG LYS SEQRES 5 B 352 PHE GLY VAL LYS ALA GLY ILE PRO ILE VAL GLU ALA LYS SEQRES 6 B 352 LYS ILE LEU PRO ASN ALA VAL TYR LEU PRO MET ARG LYS SEQRES 7 B 352 GLU VAL TYR GLN GLN VAL SER SER ARG ILE MET ASN LEU SEQRES 8 B 352 LEU ARG GLU TYR SER GLU LYS ILE GLU ILE ALA SER ILE SEQRES 9 B 352 ASP GLU ALA TYR LEU ASP ILE SER ASP LYS VAL ARG ASP SEQRES 10 B 352 TYR ARG GLU ALA TYR ASN LEU GLY LEU GLU ILE LYS ASN SEQRES 11 B 352 LYS ILE LEU GLU LYS GLU LYS ILE THR VAL THR VAL GLY SEQRES 12 B 352 ILE SER LYS ASN LYS VAL PHE ALA LYS ILE ALA ALA ASP SEQRES 13 B 352 MET ALA LYS PRO ASN GLY ILE LYS VAL ILE ASP ASP GLU SEQRES 14 B 352 GLU VAL LYS ARG LEU ILE ARG GLU LEU ASP ILE ALA ASP SEQRES 15 B 352 VAL PRO GLY ILE GLY ASN ILE THR ALA GLU LYS LEU LYS SEQRES 16 B 352 LYS LEU GLY ILE ASN LYS LEU VAL ASP THR LEU SER ILE SEQRES 17 B 352 GLU PHE ASP LYS LEU LYS GLY MET ILE GLY GLU ALA LYS SEQRES 18 B 352 ALA LYS TYR LEU ILE SER LEU ALA ARG ASP GLU TYR ASN SEQRES 19 B 352 GLU PRO ILE ARG THR ARG VAL ARG LYS SER ILE GLY ARG SEQRES 20 B 352 ILE VAL THR MET LYS ARG ASN SER ARG ASN LEU GLU GLU SEQRES 21 B 352 ILE LYS PRO TYR LEU PHE ARG ALA ILE GLU GLU SER TYR SEQRES 22 B 352 TYR LYS LEU ASP LYS ARG ILE PRO LYS ALA ILE HIS VAL SEQRES 23 B 352 VAL ALA VAL THR GLU ASP LEU ASP ILE VAL SER ARG GLY SEQRES 24 B 352 ARG THR PHE PRO HIS GLY ILE SER LYS GLU THR ALA TYR SEQRES 25 B 352 SER GLU SER VAL LYS LEU LEU GLN LYS ILE LEU GLU GLU SEQRES 26 B 352 ASP GLU ARG LYS ILE ARG ARG ILE GLY VAL ARG PHE SER SEQRES 27 B 352 LYS PHE ILE GLU ALA ILE GLY LEU ASP LYS PHE PHE ASP SEQRES 28 B 352 THR HET CA A 353 1 HET CA A 354 1 HET TMP A 355 21 HET GOL A 356 6 HET CA B 353 1 HET CA B 354 1 HETNAM CA CALCIUM ION HETNAM TMP THYMIDINE-5'-PHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 CA 4(CA 2+) FORMUL 9 TMP C10 H15 N2 O8 P FORMUL 10 GOL C3 H8 O3 FORMUL 13 HOH *305(H2 O) HELIX 1 1 TYR A 10 ASN A 20 1 11 HELIX 2 2 PRO A 21 LYS A 24 5 4 HELIX 3 3 ASN A 47 LYS A 52 1 6 HELIX 4 4 PRO A 60 LEU A 68 1 9 HELIX 5 5 ARG A 77 ARG A 93 1 17 HELIX 6 6 GLU A 94 SER A 96 5 3 HELIX 7 7 ASP A 117 LYS A 137 1 21 HELIX 8 8 ASN A 147 LYS A 159 1 13 HELIX 9 9 ASP A 167 LEU A 178 1 12 HELIX 10 10 ASP A 179 VAL A 183 5 5 HELIX 11 11 GLY A 187 LYS A 196 1 10 HELIX 12 12 LYS A 201 SER A 207 5 7 HELIX 13 13 GLU A 209 GLY A 218 1 10 HELIX 14 14 GLY A 218 ARG A 230 1 13 HELIX 15 15 ASN A 257 ASP A 277 1 21 HELIX 16 16 SER A 307 ASP A 326 1 20 HELIX 17 17 TYR B 10 ASN B 20 1 11 HELIX 18 18 PRO B 21 LYS B 24 5 4 HELIX 19 19 ASN B 47 PHE B 53 1 7 HELIX 20 20 PRO B 60 LEU B 68 1 9 HELIX 21 21 ARG B 77 ARG B 93 1 17 HELIX 22 22 ASP B 117 LYS B 137 1 21 HELIX 23 23 ASN B 147 LYS B 159 1 13 HELIX 24 24 ASP B 167 LEU B 178 1 12 HELIX 25 25 ASP B 179 VAL B 183 5 5 HELIX 26 26 GLY B 187 LEU B 197 1 11 HELIX 27 27 LYS B 201 SER B 207 5 7 HELIX 28 28 GLU B 209 GLY B 218 1 10 HELIX 29 29 GLY B 218 ARG B 230 1 13 HELIX 30 30 ASN B 257 ASP B 277 1 21 HELIX 31 31 SER B 307 ASP B 326 1 20 SHEET 1 A 5 ILE A 99 SER A 103 0 SHEET 2 A 5 GLU A 106 ASP A 110 -1 O TYR A 108 N GLU A 100 SHEET 3 A 5 VAL A 3 PHE A 8 -1 N LEU A 4 O LEU A 109 SHEET 4 A 5 VAL A 140 SER A 145 -1 O GLY A 143 N PHE A 5 SHEET 5 A 5 ILE A 163 VAL A 165 1 O LYS A 164 N ILE A 144 SHEET 1 B 3 GLY A 41 ALA A 46 0 SHEET 2 B 3 VAL A 28 PHE A 33 -1 N VAL A 32 O ALA A 42 SHEET 3 B 3 VAL A 72 PRO A 75 1 O VAL A 72 N VAL A 29 SHEET 1 C 4 SER A 244 SER A 255 0 SHEET 2 C 4 ILE A 330 PHE A 340 -1 O ILE A 333 N VAL A 249 SHEET 3 C 4 PRO A 281 THR A 290 -1 N VAL A 289 O ARG A 331 SHEET 4 C 4 ILE A 295 THR A 301 -1 O VAL A 296 N ALA A 288 SHEET 1 D 5 ILE B 99 SER B 103 0 SHEET 2 D 5 GLU B 106 ASP B 110 -1 O TYR B 108 N GLU B 100 SHEET 3 D 5 VAL B 3 PHE B 8 -1 N LEU B 4 O LEU B 109 SHEET 4 D 5 VAL B 140 SER B 145 -1 O GLY B 143 N PHE B 5 SHEET 5 D 5 ILE B 163 VAL B 165 1 O LYS B 164 N ILE B 144 SHEET 1 E 3 GLY B 41 ALA B 46 0 SHEET 2 E 3 VAL B 28 PHE B 33 -1 N VAL B 30 O ALA B 44 SHEET 3 E 3 VAL B 72 PRO B 75 1 O VAL B 72 N VAL B 29 SHEET 1 F 4 SER B 244 SER B 255 0 SHEET 2 F 4 ILE B 330 PHE B 340 -1 O PHE B 337 N ILE B 245 SHEET 3 F 4 PRO B 281 THR B 290 -1 N VAL B 289 O ARG B 331 SHEET 4 F 4 ILE B 295 THR B 301 -1 O VAL B 296 N ALA B 288 LINK OP1 DT E 14 CA CA B 353 1555 1555 2.46 LINK OD1 ASP A 7 CA CA A 353 1555 1555 2.30 LINK O PHE A 8 CA CA A 353 1555 1555 2.31 LINK OD2 ASP A 105 CA CA A 353 1555 1555 2.30 LINK O ALA A 181 CA CA A 354 1555 1555 2.34 LINK O ILE A 186 CA CA A 354 1555 1555 2.33 LINK OD1 ASP B 7 CA CA B 353 1555 1555 2.58 LINK O PHE B 8 CA CA B 353 1555 1555 2.24 LINK OD2 ASP B 105 CA CA B 353 1555 1555 2.30 LINK O ALA B 181 CA CA B 354 1555 1555 2.32 LINK O ILE B 186 CA CA B 354 1555 1555 2.36 LINK CA CA A 353 O HOH A 426 1555 1555 2.35 LINK CA CA A 353 O HOH C 25 1555 1555 2.30 LINK CA CA A 353 O1P TMP A 355 1555 1555 2.29 LINK CA CA A 354 O HOH A 420 1555 1555 2.27 LINK CA CA A 354 O HOH A 421 1555 1555 2.21 LINK CA CA A 354 O HOH A 431 1555 1555 2.30 LINK CA CA A 354 O HOH A 497 1555 1555 2.34 LINK CA CA A 354 O HOH C 17 1555 1555 2.38 LINK CA CA B 353 O HOH B 368 1555 1555 2.31 LINK CA CA B 353 O HOH E 26 1555 1555 2.46 LINK CA CA B 354 O HOH B 406 1555 1555 2.27 LINK CA CA B 354 O HOH B 402 1555 1555 2.21 LINK CA CA B 354 O HOH E 15 1555 1555 2.36 CISPEP 1 LYS A 159 PRO A 160 0 0.05 CISPEP 2 LYS B 159 PRO B 160 0 0.77 SITE 1 AC1 6 ASP A 7 PHE A 8 ASP A 105 TMP A 355 SITE 2 AC1 6 HOH A 426 HOH C 25 SITE 1 AC2 7 ALA A 181 ILE A 186 HOH A 420 HOH A 421 SITE 2 AC2 7 HOH A 431 HOH A 497 HOH C 17 SITE 1 AC3 6 ASP B 7 PHE B 8 ASP B 105 HOH B 368 SITE 2 AC3 6 DT E 14 HOH E 26 SITE 1 AC4 5 ALA B 181 ILE B 186 HOH B 402 HOH B 406 SITE 2 AC4 5 HOH E 15 SITE 1 AC5 18 PHE A 8 TYR A 10 PHE A 11 TYR A 12 SITE 2 AC5 18 ALA A 44 THR A 45 ARG A 51 ASP A 105 SITE 3 AC5 18 CA A 353 GOL A 356 HOH A 375 HOH A 427 SITE 4 AC5 18 HOH A 445 HOH A 499 DT C 14 HOH C 25 SITE 5 AC5 18 DT D 4 DA D 5 SITE 1 AC6 5 LYS A 56 ALA A 57 TMP A 355 HOH A 479 SITE 2 AC6 5 HOH A 495 CRYST1 97.993 102.510 106.109 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010205 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009424 0.00000 MASTER 454 0 6 31 24 0 15 6 0 0 0 64 END