HEADER TRANSFERASE 18-SEP-07 2RBC TITLE CRYSTAL STRUCTURE OF A PUTATIVE RIBOKINASE FROM AGROBACTERIUM TITLE 2 TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUGAR KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AGR_C_4560P; COMPND 5 EC: 2.7.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 ATCC: 33970; SOURCE 6 GENE: RBSK, AGR_C_4560, ATU2509; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: MODIFIED P11 KEYWDS SUGAR KINASE, RIBOKINASE FAMILY, ATP-BINDING SITE, STRUCTURAL KEYWDS 2 GENOMICS, AGROBACTERIUM TUMEFACIENS, PSI-2, PROTEIN STRUCTURE KEYWDS 3 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 4 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.E.CUFF,X.XU,H.ZHENG,A.M.EDWARDS,A.SAVCHENKO,A.JOACHIMIAK,MIDWEST AUTHOR 2 CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 25-OCT-17 2RBC 1 REMARK REVDAT 3 13-JUL-11 2RBC 1 VERSN REVDAT 2 24-FEB-09 2RBC 1 VERSN REVDAT 1 13-NOV-07 2RBC 0 JRNL AUTH M.E.CUFF,X.XU,H.ZHENG,A.M.EDWARDS,A.SAVCHENKO,A.JOACHIMIAK JRNL TITL STRUCTURE OF A PUTATIVE RIBOKINASE FROM AGROBACTERIUM JRNL TITL 2 TUMEFACIENS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 35713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1802 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2417 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 131 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2295 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 400 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 30.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.83000 REMARK 3 B22 (A**2) : 0.83000 REMARK 3 B33 (A**2) : -1.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.099 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.809 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.933 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2480 ; 0.015 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1648 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3379 ; 1.490 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4015 ; 0.944 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 325 ; 6.106 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;29.518 ;23.200 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 391 ;12.603 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;13.459 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 385 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2800 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 496 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 523 ; 0.210 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1838 ; 0.201 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1215 ; 0.175 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1332 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 298 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.148 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.127 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1885 ; 1.304 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 643 ; 0.231 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2541 ; 1.327 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 979 ; 2.678 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 838 ; 3.575 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 311 REMARK 3 ORIGIN FOR THE GROUP (A): 22.4041 0.1285 19.7446 REMARK 3 T TENSOR REMARK 3 T11: -0.0755 T22: -0.0828 REMARK 3 T33: -0.0735 T12: 0.0051 REMARK 3 T13: 0.0019 T23: 0.0248 REMARK 3 L TENSOR REMARK 3 L11: 0.9520 L22: 0.6633 REMARK 3 L33: 1.5371 L12: 0.3421 REMARK 3 L13: -0.3958 L23: -0.3053 REMARK 3 S TENSOR REMARK 3 S11: 0.0458 S12: -0.0107 S13: 0.0536 REMARK 3 S21: 0.0214 S22: 0.0080 S23: 0.0279 REMARK 3 S31: 0.0215 S32: -0.0294 S33: -0.0538 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE BIJVOET DIFFERENCES WERE USED IN REMARK 3 PHASING. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 4 REMARK 4 2RBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044654. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97873, 0.97886 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : CUSTOM-MADE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69844 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.23500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM 5.0, HKL-3000, SHELXD, SOLVE, RESOLVE, REMARK 200 CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PH 6.5, 1.5M AMMONIUM REMARK 280 SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.89950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.51200 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.51200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.84925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.51200 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.51200 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.94975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.51200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.51200 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 104.84925 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.51200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.51200 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 34.94975 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 69.89950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS REMARK 300 UNKNOWN, AND THAT PROBABLY IT IS A DIMER SHOWN IN REMARK 350. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2520 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 69.89950 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 327 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 ARG A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 PHE A -3 REMARK 465 GLN A -2 REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MSE A 1 REMARK 465 VAL A 2 REMARK 465 LYS A 3 REMARK 465 GLU A 4 REMARK 465 PRO A 5 REMARK 465 SER A 312 REMARK 465 GLU A 313 REMARK 465 PRO A 314 REMARK 465 ALA A 315 REMARK 465 LEU A 316 REMARK 465 ARG A 317 REMARK 465 ALA A 318 REMARK 465 SER A 319 REMARK 465 GLY A 320 REMARK 465 SER A 321 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 458 O HOH A 640 2.10 REMARK 500 O HOH A 469 O HOH A 662 2.11 REMARK 500 O HOH A 503 O HOH A 680 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 44 -147.41 -155.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 322 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 323 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 324 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 325 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 326 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 327 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 328 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 329 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 330 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 333 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6153 RELATED DB: TARGETDB DBREF 2RBC A 1 319 UNP Q8UCH8 Q8UCH8_AGRT5 1 319 SEQADV 2RBC MSE A -21 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC GLY A -20 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC SER A -19 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC SER A -18 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC HIS A -17 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC HIS A -16 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC HIS A -15 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC HIS A -14 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC HIS A -13 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC HIS A -12 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC SER A -11 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC SER A -10 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC GLY A -9 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC ARG A -8 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC GLU A -7 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC ASN A -6 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC LEU A -5 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC TYR A -4 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC PHE A -3 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC GLN A -2 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC GLY A -1 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC HIS A 0 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC GLY A 320 UNP Q8UCH8 EXPRESSION TAG SEQADV 2RBC SER A 321 UNP Q8UCH8 EXPRESSION TAG SEQRES 1 A 343 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 343 ARG GLU ASN LEU TYR PHE GLN GLY HIS MSE VAL LYS GLU SEQRES 3 A 343 PRO GLY GLY LYS HIS VAL LEU CYS VAL GLY ALA ALA VAL SEQRES 4 A 343 LEU ASP THR LEU PHE ARG VAL ALA ASP MSE PRO LYS GLY SEQRES 5 A 343 GLU GLY LYS VAL LEU PRO TYR GLU VAL LEU GLN ILE ALA SEQRES 6 A 343 GLU GLY MSE ALA SER SER ALA ALA TYR ALA VAL HIS ARG SEQRES 7 A 343 MSE GLY GLY ARG ALA SER LEU TRP GLY ALA VAL GLY ASP SEQRES 8 A 343 ASP GLU THR GLY THR ARG ILE LEU ARG ASP LEU SER GLU SEQRES 9 A 343 SER GLY ILE ASP THR SER GLY MSE THR VAL ALA PRO GLY SEQRES 10 A 343 ALA ARG SER ALA LEU SER THR ILE ILE ILE ASP ASN ARG SEQRES 11 A 343 GLY GLU ARG LEU ILE VAL PRO PHE TYR ASP HIS ARG LEU SEQRES 12 A 343 HIS GLU LYS LYS ARG ALA CYS THR PRO GLU ASP ILE ALA SEQRES 13 A 343 LEU PHE ASP ALA VAL LEU VAL ASP VAL ARG TRP PRO GLU SEQRES 14 A 343 LEU ALA LEU ASP VAL LEU THR VAL ALA ARG ALA LEU GLY SEQRES 15 A 343 LYS PRO ALA ILE LEU ASP GLY ASP VAL ALA PRO VAL GLU SEQRES 16 A 343 THR LEU GLU GLY LEU ALA PRO ALA ALA THR HIS ILE VAL SEQRES 17 A 343 PHE SER GLU PRO ALA ALA THR ARG LEU THR GLY LEU GLU SEQRES 18 A 343 THR VAL LYS ASP MSE LEU PRO VAL LEU HIS ALA ARG TYR SEQRES 19 A 343 PRO GLN THR PHE ILE ALA VAL THR ALA GLY PRO ALA GLY SEQRES 20 A 343 CYS TRP TRP THR GLU ALA ASP ASP PRO THR VAL HIS PHE SEQRES 21 A 343 GLN THR THR MSE GLN VAL GLU ALA VAL ASP THR LEU ALA SEQRES 22 A 343 ALA GLY ASP ILE PHE HIS GLY THR PHE ALA LEU ALA MSE SEQRES 23 A 343 ALA GLU GLY MSE GLN SER ARG ALA ALA VAL ARG LEU SER SEQRES 24 A 343 SER VAL ALA ALA ALA LEU LYS CYS THR VAL PHE GLY GLY SEQRES 25 A 343 ARG ILE GLY ALA PRO THR ARG GLU GLU THR GLU GLU ALA SEQRES 26 A 343 MSE ARG GLN TRP LEU GLU ARG GLU SER GLU PRO ALA LEU SEQRES 27 A 343 ARG ALA SER GLY SER MODRES 2RBC MSE A 27 MET SELENOMETHIONINE MODRES 2RBC MSE A 46 MET SELENOMETHIONINE MODRES 2RBC MSE A 57 MET SELENOMETHIONINE MODRES 2RBC MSE A 90 MET SELENOMETHIONINE MODRES 2RBC MSE A 204 MET SELENOMETHIONINE MODRES 2RBC MSE A 242 MET SELENOMETHIONINE MODRES 2RBC MSE A 264 MET SELENOMETHIONINE MODRES 2RBC MSE A 268 MET SELENOMETHIONINE MODRES 2RBC MSE A 304 MET SELENOMETHIONINE HET MSE A 27 8 HET MSE A 46 8 HET MSE A 57 8 HET MSE A 90 16 HET MSE A 204 8 HET MSE A 242 8 HET MSE A 264 8 HET MSE A 268 8 HET MSE A 304 8 HET SO4 A 322 5 HET SO4 A 323 5 HET SO4 A 324 5 HET SO4 A 325 5 HET SO4 A 326 5 HET CL A 327 1 HET EDO A 328 4 HET EDO A 329 4 HET EDO A 330 4 HET EDO A 331 4 HET EDO A 332 4 HET GOL A 333 12 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 9(C5 H11 N O2 SE) FORMUL 2 SO4 5(O4 S 2-) FORMUL 7 CL CL 1- FORMUL 8 EDO 5(C2 H6 O2) FORMUL 13 GOL C3 H8 O3 FORMUL 14 HOH *400(H2 O) HELIX 1 1 GLY A 45 MSE A 57 1 13 HELIX 2 2 ASP A 70 SER A 83 1 14 HELIX 3 3 ASP A 118 GLU A 123 5 6 HELIX 4 4 THR A 129 ALA A 134 1 6 HELIX 5 5 TRP A 145 LEU A 159 1 15 HELIX 6 6 PRO A 171 ALA A 179 1 9 HELIX 7 7 PRO A 180 ALA A 182 5 3 HELIX 8 8 GLU A 189 GLY A 197 1 9 HELIX 9 9 THR A 200 TYR A 212 1 13 HELIX 10 10 GLY A 222 ALA A 224 5 3 HELIX 11 11 ALA A 251 GLU A 266 1 16 HELIX 12 12 GLN A 269 THR A 286 1 18 HELIX 13 13 GLY A 289 ALA A 294 5 6 HELIX 14 14 THR A 296 GLU A 309 1 14 SHEET 1 A 9 ILE A 85 ASP A 86 0 SHEET 2 A 9 ARG A 60 TRP A 64 1 N ALA A 61 O ASP A 86 SHEET 3 A 9 HIS A 9 VAL A 13 1 N CYS A 12 O SER A 62 SHEET 4 A 9 ALA A 138 VAL A 141 1 O LEU A 140 N LEU A 11 SHEET 5 A 9 ALA A 163 GLY A 167 1 O ASP A 166 N VAL A 141 SHEET 6 A 9 HIS A 184 SER A 188 1 O VAL A 186 N LEU A 165 SHEET 7 A 9 PHE A 216 THR A 220 1 O ALA A 218 N PHE A 187 SHEET 8 A 9 CYS A 226 THR A 229 -1 O TRP A 227 N VAL A 219 SHEET 9 A 9 VAL A 236 GLN A 239 -1 O HIS A 237 N TRP A 228 SHEET 1 B 4 GLU A 38 GLU A 44 0 SHEET 2 B 4 VAL A 17 ARG A 23 -1 N LEU A 21 O LEU A 40 SHEET 3 B 4 ALA A 99 ILE A 105 1 O ILE A 103 N THR A 20 SHEET 4 B 4 ARG A 111 PHE A 116 -1 O PHE A 116 N LEU A 100 SHEET 1 C 2 ALA A 66 GLY A 68 0 SHEET 2 C 2 THR A 91 ALA A 93 1 O ALA A 93 N VAL A 67 LINK C ASP A 26 N MSE A 27 1555 1555 1.33 LINK C MSE A 27 N PRO A 28 1555 1555 1.34 LINK C GLY A 45 N MSE A 46 1555 1555 1.33 LINK C MSE A 46 N ALA A 47 1555 1555 1.33 LINK C ARG A 56 N MSE A 57 1555 1555 1.33 LINK C MSE A 57 N GLY A 58 1555 1555 1.32 LINK C GLY A 89 N AMSE A 90 1555 1555 1.33 LINK C GLY A 89 N BMSE A 90 1555 1555 1.33 LINK C AMSE A 90 N THR A 91 1555 1555 1.33 LINK C BMSE A 90 N THR A 91 1555 1555 1.32 LINK C ASP A 203 N MSE A 204 1555 1555 1.32 LINK C MSE A 204 N LEU A 205 1555 1555 1.33 LINK C THR A 241 N MSE A 242 1555 1555 1.33 LINK C MSE A 242 N GLN A 243 1555 1555 1.32 LINK C ALA A 263 N MSE A 264 1555 1555 1.34 LINK C MSE A 264 N ALA A 265 1555 1555 1.32 LINK C GLY A 267 N MSE A 268 1555 1555 1.32 LINK C MSE A 268 N GLN A 269 1555 1555 1.34 LINK C ALA A 303 N MSE A 304 1555 1555 1.33 LINK C MSE A 304 N ARG A 305 1555 1555 1.33 SITE 1 AC1 9 GLN A 239 THR A 240 ARG A 275 TRP A 307 SITE 2 AC1 9 LEU A 308 ARG A 310 HOH A 386 HOH A 610 SITE 3 AC1 9 HOH A 631 SITE 1 AC2 6 TRP A 228 HIS A 237 ARG A 271 HOH A 584 SITE 2 AC2 6 HOH A 595 HOH A 658 SITE 1 AC3 5 ARG A 56 HOH A 510 HOH A 571 HOH A 661 SITE 2 AC3 5 HOH A 668 SITE 1 AC4 4 PRO A 171 VAL A 172 GLU A 173 ARG A 194 SITE 1 AC5 2 ARG A 97 ARG A 120 SITE 1 AC6 1 ARG A 75 SITE 1 AC7 5 THR A 20 LEU A 100 SER A 101 THR A 102 SITE 2 AC7 5 HOH A 350 SITE 1 AC8 4 ALA A 127 THR A 129 ASP A 132 HOH A 561 SITE 1 AC9 4 GLY A 89 MSE A 90 THR A 91 HOH A 719 SITE 1 BC1 8 THR A 220 ALA A 221 GLY A 222 GLY A 225 SITE 2 BC1 8 PHE A 256 SER A 278 HOH A 374 HOH A 732 SITE 1 BC2 3 ARG A 111 THR A 249 HOH A 440 SITE 1 BC3 9 VAL A 17 ASP A 19 SER A 101 ILE A 113 SITE 2 BC3 9 HOH A 334 HOH A 457 HOH A 576 HOH A 580 SITE 3 BC3 9 HOH A 723 CRYST1 81.024 81.024 139.799 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012342 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012342 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007153 0.00000 MASTER 410 0 21 14 15 0 20 6 0 0 0 27 END