HEADER UNKNOWN FUNCTION 10-SEP-07 2R86 TITLE CRYSTAL STRUCTURE OF PURP FROM PYROCOCCUS FURIOSUS COMPLEXED WITH ATP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURP PROTEIN PF1517; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PYROCOCCUS FURIOSUS; SOURCE 3 ORGANISM_TAXID: 2261; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: T7-7 KEYWDS ATP-GRASP SUPERFAMILY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,R.H.WHITE,S.E.EALICK REVDAT 4 25-OCT-17 2R86 1 REMARK REVDAT 3 24-FEB-09 2R86 1 VERSN REVDAT 2 22-JUL-08 2R86 1 JRNL REVDAT 1 04-DEC-07 2R86 0 JRNL AUTH Y.ZHANG,R.H.WHITE,S.E.EALICK JRNL TITL CRYSTAL STRUCTURE AND FUNCTION OF JRNL TITL 2 5-FORMAMINOIMIDAZOLE-4-CARBOXAMIDE RIBONUCLEOTIDE SYNTHETASE JRNL TITL 3 FROM METHANOCALDOCOCCUS JANNASCHII. JRNL REF BIOCHEMISTRY V. 47 205 2008 JRNL REFN ISSN 0006-2960 JRNL PMID 18069798 JRNL DOI 10.1021/BI701406G REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.3.0026 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 55970 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.239 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2874 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3032 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.26 REMARK 3 BIN R VALUE (WORKING SET) : 0.3010 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5291 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 133 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.86000 REMARK 3 B22 (A**2) : 1.86000 REMARK 3 B33 (A**2) : -2.80000 REMARK 3 B12 (A**2) : 0.93000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.235 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.135 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.915 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.936 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5522 ; 0.007 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7491 ; 1.024 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 650 ; 5.628 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 254 ;35.099 ;23.661 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 971 ;14.795 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;11.642 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 809 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4128 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2224 ; 0.180 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3764 ; 0.305 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 237 ; 0.103 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 150 ; 0.152 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 46 ; 0.139 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3258 ; 0.463 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5293 ; 0.870 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2354 ; 0.940 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2198 ; 1.676 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 334 5 REMARK 3 1 B 1 B 334 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1268 ; 0.150 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 B (A): 1307 ; 0.370 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1268 ; 7.810 ; 2.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 1307 ; 7.870 ;20.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R86 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044545. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55970 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 81.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.28300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2R7K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% MPD, 100 MM NA/K PHOSPHATE, PH REMARK 280 6.1, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 61.23850 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.35606 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 186.97500 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 61.23850 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 35.35606 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 186.97500 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 61.23850 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 35.35606 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 186.97500 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 61.23850 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 35.35606 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 186.97500 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 61.23850 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 35.35606 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 186.97500 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 61.23850 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 35.35606 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 186.97500 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.71213 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 373.95000 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 70.71213 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 373.95000 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 70.71213 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 373.95000 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 70.71213 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 373.95000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 70.71213 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 373.95000 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 70.71213 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 373.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A HEXAMER OR A TRIMER FROM THE REMARK 300 ASYMMETRIC UNIT BY THE OPERATIONS: (X,Y,Z), (-Y,X-Y,Z +(1 1 0)), (- REMARK 300 X+Y,-X,Z) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19440 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 122.47700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 61.23850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 106.06819 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16210 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 122.47700 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 61.23850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 106.06819 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 676 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 688 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 134 REMARK 465 GLY B 135 REMARK 465 ALA B 136 REMARK 465 LYS B 137 REMARK 465 GLY B 138 REMARK 465 GLY B 139 REMARK 465 GLY B 160 REMARK 465 ILE B 161 REMARK 465 LYS B 162 REMARK 465 ARG B 163 REMARK 465 LYS B 164 REMARK 465 GLU B 165 REMARK 465 ASP B 166 REMARK 465 LEU B 167 REMARK 465 LYS B 168 REMARK 465 ASN B 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 11 -62.28 77.16 REMARK 500 SER A 12 25.54 -157.41 REMARK 500 LYS A 41 -61.27 -120.36 REMARK 500 LYS A 137 74.69 -118.80 REMARK 500 ASN A 169 90.15 31.98 REMARK 500 SER A 198 167.16 177.54 REMARK 500 MET A 260 13.48 -145.71 REMARK 500 ASN A 297 33.47 -97.95 REMARK 500 MET A 328 31.92 -140.02 REMARK 500 HIS B 11 -63.50 72.93 REMARK 500 SER B 12 22.95 -154.08 REMARK 500 LYS B 41 -55.62 -129.50 REMARK 500 GLU B 51 43.92 -79.67 REMARK 500 SER B 198 172.84 179.52 REMARK 500 PHE B 295 44.64 -107.17 REMARK 500 ASN B 297 36.07 -94.28 REMARK 500 MET B 328 34.67 -147.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 600 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 98 O REMARK 620 2 ILE A 284 O 102.3 REMARK 620 3 HOH A 673 O 89.6 145.3 REMARK 620 4 HOH A 601 O 149.7 82.1 103.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 600 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 98 O REMARK 620 2 ILE B 284 O 112.8 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP B 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R84 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH COMPLEXED WITH AMP AND AICAR REMARK 900 RELATED ID: 2R85 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH COMPLEXED WITH AMP REMARK 900 RELATED ID: 2R87 RELATED DB: PDB REMARK 900 SAME PROTEIN WITH COMPLEXED WITH ADP DBREF 2R86 A 1 334 UNP Q8U0R7 Q8U0R7_PYRFU 1 334 DBREF 2R86 B 1 334 UNP Q8U0R7 Q8U0R7_PYRFU 1 334 SEQRES 1 A 334 MET LYS VAL ARG ILE ALA THR TYR ALA SER HIS SER ALA SEQRES 2 A 334 LEU GLN ILE LEU LYS GLY ALA LYS ASP GLU GLY PHE GLU SEQRES 3 A 334 THR ILE ALA PHE GLY SER SER LYS VAL LYS PRO LEU TYR SEQRES 4 A 334 THR LYS TYR PHE PRO VAL ALA ASP TYR PHE ILE GLU GLU SEQRES 5 A 334 LYS TYR PRO GLU GLU GLU LEU LEU ASN LEU ASN ALA VAL SEQRES 6 A 334 VAL VAL PRO THR GLY SER PHE VAL ALA HIS LEU GLY ILE SEQRES 7 A 334 GLU LEU VAL GLU ASN MET LYS VAL PRO TYR PHE GLY ASN SEQRES 8 A 334 LYS ARG VAL LEU ARG TRP GLU SER ASP ARG ASN LEU GLU SEQRES 9 A 334 ARG LYS TRP LEU LYS LYS ALA GLY ILE ARG VAL PRO GLU SEQRES 10 A 334 VAL TYR GLU ASP PRO ASP ASP ILE GLU LYS PRO VAL ILE SEQRES 11 A 334 VAL LYS PRO HIS GLY ALA LYS GLY GLY LYS GLY TYR PHE SEQRES 12 A 334 LEU ALA LYS ASP PRO GLU ASP PHE TRP ARG LYS ALA GLU SEQRES 13 A 334 LYS PHE LEU GLY ILE LYS ARG LYS GLU ASP LEU LYS ASN SEQRES 14 A 334 ILE GLN ILE GLN GLU TYR VAL LEU GLY VAL PRO VAL TYR SEQRES 15 A 334 PRO HIS TYR PHE TYR SER LYS VAL ARG GLU GLU LEU GLU SEQRES 16 A 334 LEU MET SER ILE ASP ARG ARG TYR GLU SER ASN VAL ASP SEQRES 17 A 334 ALA ILE GLY ARG ILE PRO ALA LYS ASP GLN LEU GLU PHE SEQRES 18 A 334 ASP MET ASP ILE THR TYR THR VAL ILE GLY ASN ILE PRO SEQRES 19 A 334 ILE VAL LEU ARG GLU SER LEU LEU MET ASP VAL ILE GLU SEQRES 20 A 334 ALA GLY GLU ARG VAL VAL LYS ALA ALA GLU GLU LEU MET SEQRES 21 A 334 GLY GLY LEU TRP GLY PRO PHE CYS LEU GLU GLY VAL PHE SEQRES 22 A 334 THR PRO ASP LEU GLU PHE VAL VAL PHE GLU ILE SER ALA SEQRES 23 A 334 ARG ILE VAL ALA GLY THR ASN ILE PHE VAL ASN GLY SER SEQRES 24 A 334 PRO TYR THR TRP LEU ARG TYR ASP ARG PRO VAL SER THR SEQRES 25 A 334 GLY ARG ARG ILE ALA MET GLU ILE ARG GLU ALA ILE GLU SEQRES 26 A 334 ASN ASP MET LEU GLU LYS VAL LEU THR SEQRES 1 B 334 MET LYS VAL ARG ILE ALA THR TYR ALA SER HIS SER ALA SEQRES 2 B 334 LEU GLN ILE LEU LYS GLY ALA LYS ASP GLU GLY PHE GLU SEQRES 3 B 334 THR ILE ALA PHE GLY SER SER LYS VAL LYS PRO LEU TYR SEQRES 4 B 334 THR LYS TYR PHE PRO VAL ALA ASP TYR PHE ILE GLU GLU SEQRES 5 B 334 LYS TYR PRO GLU GLU GLU LEU LEU ASN LEU ASN ALA VAL SEQRES 6 B 334 VAL VAL PRO THR GLY SER PHE VAL ALA HIS LEU GLY ILE SEQRES 7 B 334 GLU LEU VAL GLU ASN MET LYS VAL PRO TYR PHE GLY ASN SEQRES 8 B 334 LYS ARG VAL LEU ARG TRP GLU SER ASP ARG ASN LEU GLU SEQRES 9 B 334 ARG LYS TRP LEU LYS LYS ALA GLY ILE ARG VAL PRO GLU SEQRES 10 B 334 VAL TYR GLU ASP PRO ASP ASP ILE GLU LYS PRO VAL ILE SEQRES 11 B 334 VAL LYS PRO HIS GLY ALA LYS GLY GLY LYS GLY TYR PHE SEQRES 12 B 334 LEU ALA LYS ASP PRO GLU ASP PHE TRP ARG LYS ALA GLU SEQRES 13 B 334 LYS PHE LEU GLY ILE LYS ARG LYS GLU ASP LEU LYS ASN SEQRES 14 B 334 ILE GLN ILE GLN GLU TYR VAL LEU GLY VAL PRO VAL TYR SEQRES 15 B 334 PRO HIS TYR PHE TYR SER LYS VAL ARG GLU GLU LEU GLU SEQRES 16 B 334 LEU MET SER ILE ASP ARG ARG TYR GLU SER ASN VAL ASP SEQRES 17 B 334 ALA ILE GLY ARG ILE PRO ALA LYS ASP GLN LEU GLU PHE SEQRES 18 B 334 ASP MET ASP ILE THR TYR THR VAL ILE GLY ASN ILE PRO SEQRES 19 B 334 ILE VAL LEU ARG GLU SER LEU LEU MET ASP VAL ILE GLU SEQRES 20 B 334 ALA GLY GLU ARG VAL VAL LYS ALA ALA GLU GLU LEU MET SEQRES 21 B 334 GLY GLY LEU TRP GLY PRO PHE CYS LEU GLU GLY VAL PHE SEQRES 22 B 334 THR PRO ASP LEU GLU PHE VAL VAL PHE GLU ILE SER ALA SEQRES 23 B 334 ARG ILE VAL ALA GLY THR ASN ILE PHE VAL ASN GLY SER SEQRES 24 B 334 PRO TYR THR TRP LEU ARG TYR ASP ARG PRO VAL SER THR SEQRES 25 B 334 GLY ARG ARG ILE ALA MET GLU ILE ARG GLU ALA ILE GLU SEQRES 26 B 334 ASN ASP MET LEU GLU LYS VAL LEU THR HET PO4 A 401 5 HET PO4 A 402 5 HET NA A 600 1 HET ATP A 400 31 HET MPD A 500 8 HET MPD A 501 8 HET PO4 B 401 5 HET PO4 B 402 5 HET NA B 600 1 HET ATP B 400 31 HETNAM PO4 PHOSPHATE ION HETNAM NA SODIUM ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 PO4 4(O4 P 3-) FORMUL 5 NA 2(NA 1+) FORMUL 6 ATP 2(C10 H16 N5 O13 P3) FORMUL 7 MPD 2(C6 H14 O2) FORMUL 13 HOH *133(H2 O) HELIX 1 1 SER A 12 GLU A 23 1 12 HELIX 2 2 SER A 32 LYS A 34 5 3 HELIX 3 3 VAL A 35 LYS A 41 1 7 HELIX 4 4 PRO A 55 LEU A 62 1 8 HELIX 5 5 SER A 71 GLY A 77 1 7 HELIX 6 6 GLY A 77 ASN A 83 1 7 HELIX 7 7 ARG A 93 ASP A 100 1 8 HELIX 8 8 ASP A 100 ALA A 111 1 12 HELIX 9 9 ASP A 121 ILE A 125 5 5 HELIX 10 10 ASP A 147 GLY A 160 1 14 HELIX 11 11 ARG A 163 LEU A 167 5 5 HELIX 12 12 ALA A 209 ILE A 213 5 5 HELIX 13 13 PRO A 214 GLU A 220 1 7 HELIX 14 14 ARG A 238 SER A 240 5 3 HELIX 15 15 LEU A 241 MET A 260 1 20 HELIX 16 16 VAL A 289 VAL A 296 5 8 HELIX 17 17 TYR A 301 ARG A 305 5 5 HELIX 18 18 SER A 311 ASN A 326 1 16 HELIX 19 19 MET A 328 LYS A 331 5 4 HELIX 20 20 SER B 12 GLU B 23 1 12 HELIX 21 21 SER B 32 LYS B 34 5 3 HELIX 22 22 VAL B 35 LYS B 41 1 7 HELIX 23 23 PRO B 55 LEU B 62 1 8 HELIX 24 24 SER B 71 GLY B 77 1 7 HELIX 25 25 GLY B 77 ASN B 83 1 7 HELIX 26 26 ARG B 93 ASP B 100 1 8 HELIX 27 27 ASP B 100 ALA B 111 1 12 HELIX 28 28 ASP B 121 ILE B 125 5 5 HELIX 29 29 ASP B 147 PHE B 158 1 12 HELIX 30 30 VAL B 207 GLY B 211 1 5 HELIX 31 31 PRO B 214 GLU B 220 1 7 HELIX 32 32 ARG B 238 SER B 240 5 3 HELIX 33 33 LEU B 241 MET B 260 1 20 HELIX 34 34 VAL B 289 VAL B 296 5 8 HELIX 35 35 TYR B 301 ARG B 305 5 5 HELIX 36 36 SER B 311 ASN B 326 1 16 HELIX 37 37 MET B 328 LYS B 331 5 4 SHEET 1 A 4 TYR A 48 ILE A 50 0 SHEET 2 A 4 THR A 27 PHE A 30 1 N ALA A 29 O TYR A 48 SHEET 3 A 4 ARG A 4 TYR A 8 1 N ILE A 5 O ILE A 28 SHEET 4 A 4 ALA A 64 VAL A 66 1 O VAL A 65 N ALA A 6 SHEET 1 B 2 TYR A 88 PHE A 89 0 SHEET 2 B 2 LEU A 333 THR A 334 -1 O THR A 334 N TYR A 88 SHEET 1 C 4 VAL A 118 TYR A 119 0 SHEET 2 C 4 ILE A 170 GLU A 174 -1 O ILE A 172 N TYR A 119 SHEET 3 C 4 VAL A 129 PRO A 133 -1 N ILE A 130 O GLN A 173 SHEET 4 C 4 PHE A 143 ALA A 145 -1 O ALA A 145 N VAL A 129 SHEET 1 D 5 TYR A 227 PRO A 234 0 SHEET 2 D 5 GLU A 193 ASN A 206 -1 N TYR A 203 O ILE A 230 SHEET 3 D 5 VAL A 179 SER A 188 -1 N HIS A 184 O SER A 198 SHEET 4 D 5 GLY A 265 PHE A 273 -1 O GLY A 265 N TYR A 187 SHEET 5 D 5 PHE A 279 SER A 285 -1 O GLU A 283 N GLU A 270 SHEET 1 E 4 TYR B 48 ILE B 50 0 SHEET 2 E 4 THR B 27 PHE B 30 1 N ALA B 29 O TYR B 48 SHEET 3 E 4 ARG B 4 TYR B 8 1 N ILE B 5 O ILE B 28 SHEET 4 E 4 ALA B 64 VAL B 66 1 O VAL B 65 N ALA B 6 SHEET 1 F 2 TYR B 88 PHE B 89 0 SHEET 2 F 2 LEU B 333 THR B 334 -1 O THR B 334 N TYR B 88 SHEET 1 G 3 PHE B 143 ALA B 145 0 SHEET 2 G 3 VAL B 129 LYS B 132 -1 N VAL B 129 O ALA B 145 SHEET 3 G 3 GLN B 171 GLU B 174 -1 O GLN B 173 N ILE B 130 SHEET 1 H 5 TYR B 227 PRO B 234 0 SHEET 2 H 5 GLU B 193 ASN B 206 -1 N ARG B 201 O ILE B 233 SHEET 3 H 5 VAL B 179 SER B 188 -1 N HIS B 184 O SER B 198 SHEET 4 H 5 GLY B 265 PHE B 273 -1 O GLY B 265 N TYR B 187 SHEET 5 H 5 PHE B 279 SER B 285 -1 O SER B 285 N CYS B 268 LINK O GLU A 98 NA NA A 600 1555 1555 2.58 LINK O ILE A 284 NA NA A 600 1555 1555 2.60 LINK O GLU B 98 NA NA B 600 1555 1555 2.58 LINK O ILE B 284 NA NA B 600 1555 1555 2.64 LINK NA NA A 600 O HOH A 673 1555 1555 2.55 LINK NA NA A 600 O HOH A 601 1555 1555 2.72 CISPEP 1 HIS A 134 GLY A 135 0 -4.22 CISPEP 2 SER A 205 ASN A 206 0 8.36 CISPEP 3 SER B 205 ASN B 206 0 7.07 SITE 1 AC1 7 SER A 10 SER A 71 HIS A 75 ARG A 238 SITE 2 AC1 7 SER A 240 HOH A 642 HOH A 668 SITE 1 AC2 9 HIS A 11 ARG A 202 ARG A 287 ALA A 290 SITE 2 AC2 9 HOH A 612 HOH A 644 HOH A 664 HOH A 665 SITE 3 AC2 9 HOH A 667 SITE 1 AC3 5 GLU A 98 GLU A 104 ILE A 284 HOH A 601 SITE 2 AC3 5 HOH A 673 SITE 1 AC4 6 SER B 10 SER B 71 HIS B 75 ARG B 238 SITE 2 AC4 6 SER B 240 HOH B 603 SITE 1 AC5 6 HIS B 11 ARG B 202 ARG B 287 ALA B 290 SITE 2 AC5 6 HOH B 611 HOH B 618 SITE 1 AC6 3 GLU B 98 GLU B 104 ILE B 284 SITE 1 AC7 13 PRO A 116 LYS A 132 ALA A 136 GLY A 138 SITE 2 AC7 13 TYR A 142 GLN A 173 GLU A 174 TYR A 175 SITE 3 AC7 13 PHE A 282 GLU A 283 HOH A 663 HOH A 687 SITE 4 AC7 13 HOH A 691 SITE 1 AC8 9 PRO B 116 LYS B 132 TYR B 142 GLN B 173 SITE 2 AC8 9 GLU B 174 ARG B 212 TYR B 227 PHE B 282 SITE 3 AC8 9 HOH B 642 SITE 1 AC9 4 ILE A 130 TYR A 142 ASP A 217 TYR A 227 SITE 1 BC1 3 TYR A 175 LEU A 177 PHE A 221 CRYST1 122.477 122.477 560.925 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008165 0.004714 0.000000 0.00000 SCALE2 0.000000 0.009428 0.000000 0.00000 SCALE3 0.000000 0.000000 0.001783 0.00000 MASTER 464 0 10 37 29 0 21 6 0 0 0 52 END