HEADER HYDROLASE 30-AUG-07 2R44 TITLE CRYSTAL STRUCTURE OF A PUTATIVE ATPASE (CHU_0153) FROM CYTOPHAGA TITLE 2 HUTCHINSONII ATCC 33406 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CYTOPHAGA HUTCHINSONII ATCC 33406; SOURCE 3 ORGANISM_TAXID: 269798; SOURCE 4 STRAIN: NCIMB 9469; SOURCE 5 GENE: YP_676785.1, CHU_0153; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE ATPASE, STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 24-JUL-19 2R44 1 REMARK LINK REVDAT 5 25-OCT-17 2R44 1 REMARK REVDAT 4 13-JUL-11 2R44 1 VERSN REVDAT 3 28-JUL-10 2R44 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2R44 1 VERSN REVDAT 1 18-SEP-07 2R44 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF PUTATIVE ATPASE (YP_676785.1) FROM JRNL TITL 2 CYTOPHAGA HUTCHINSONII ATCC 33406 AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 28893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1470 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2006 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.2980 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2585 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 99 REMARK 3 SOLVENT ATOMS : 111 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 34.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.65000 REMARK 3 B22 (A**2) : -0.65000 REMARK 3 B33 (A**2) : 0.98000 REMARK 3 B12 (A**2) : -0.33000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.160 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.145 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.105 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.780 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2820 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1960 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3802 ; 1.702 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4812 ; 1.304 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 358 ; 3.856 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 125 ;36.077 ;24.560 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 506 ;12.096 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;15.395 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 433 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3056 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 537 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 552 ; 0.184 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1979 ; 0.140 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1329 ; 0.169 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 1405 ; 0.083 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 166 ; 0.176 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 17 ; 0.093 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 72 ; 0.169 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.157 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1757 ; 1.993 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 679 ; 0.491 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2760 ; 3.133 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1198 ; 5.442 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1028 ; 7.653 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): 44.8920 16.3107 -7.3264 REMARK 3 T TENSOR REMARK 3 T11: -0.1260 T22: -0.0311 REMARK 3 T33: 0.0522 T12: -0.0134 REMARK 3 T13: 0.0078 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 3.3437 L22: 3.4478 REMARK 3 L33: 2.7390 L12: -2.3968 REMARK 3 L13: -1.6321 L23: 1.8819 REMARK 3 S TENSOR REMARK 3 S11: 0.1382 S12: -0.0279 S13: 0.6580 REMARK 3 S21: -0.1541 S22: 0.2339 S23: -0.3783 REMARK 3 S31: -0.2626 S32: 0.1986 S33: -0.3721 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 179 REMARK 3 ORIGIN FOR THE GROUP (A): 21.5941 7.6485 -4.5163 REMARK 3 T TENSOR REMARK 3 T11: -0.0626 T22: 0.0047 REMARK 3 T33: 0.0584 T12: 0.0000 REMARK 3 T13: -0.0878 T23: 0.1317 REMARK 3 L TENSOR REMARK 3 L11: 2.9629 L22: 1.7014 REMARK 3 L33: 0.0653 L12: 0.6426 REMARK 3 L13: -0.3735 L23: 0.0877 REMARK 3 S TENSOR REMARK 3 S11: -0.0757 S12: 0.2913 S13: 0.0995 REMARK 3 S21: -0.1826 S22: 0.0546 S23: 0.4432 REMARK 3 S31: -0.0943 S32: 0.0099 S33: 0.0211 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 180 A 223 REMARK 3 ORIGIN FOR THE GROUP (A): 34.3618 23.2890 -6.2604 REMARK 3 T TENSOR REMARK 3 T11: -0.0634 T22: -0.0216 REMARK 3 T33: -0.0792 T12: -0.0459 REMARK 3 T13: -0.0300 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.5212 L22: 3.1545 REMARK 3 L33: 0.7547 L12: -1.9669 REMARK 3 L13: -0.7496 L23: 0.4839 REMARK 3 S TENSOR REMARK 3 S11: 0.1104 S12: 0.0693 S13: 0.1884 REMARK 3 S21: -0.2276 S22: -0.0952 S23: -0.2161 REMARK 3 S31: -0.0177 S32: -0.0354 S33: -0.0152 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 224 A 329 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5408 5.6690 15.0568 REMARK 3 T TENSOR REMARK 3 T11: -0.0352 T22: -0.0105 REMARK 3 T33: -0.0956 T12: -0.0136 REMARK 3 T13: -0.0249 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.3811 L22: 2.6883 REMARK 3 L33: 3.1960 L12: 0.8132 REMARK 3 L13: -0.9941 L23: -0.6201 REMARK 3 S TENSOR REMARK 3 S11: 0.1408 S12: -0.1648 S13: 0.1400 REMARK 3 S21: 0.4378 S22: -0.0560 S23: -0.0281 REMARK 3 S31: -0.2621 S32: 0.1621 S33: -0.0848 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO REMARK 3 PARTIAL S-MET INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. PG4 MOLECULES FROM THE CRYSTALLIZATION CONDITION REMARK 3 HAVE BEEN MODELED IN THE SOLVENT STRUCTURE. REMARK 4 REMARK 4 2R44 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.54 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97929, 0.97905 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 (HORIZONTAL FOCUSING) REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28915 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.013 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.350 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.51900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 0.2M SODIUM CHLORIDE, 50.0% REMARK 280 PEG 200, 0.1M NA/K PHOSPHATE PH 6.54, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 34.11333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 17.05667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 25.58500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.52833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 42.64167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. CRYSTAL PACKING ANALYSIS SUGGESTS A MONOMER REMARK 300 IN THE SOLUTION. SIZE EXCLUSION CHROMATOGRAPHY WITH REMARK 300 STATIC LIGHT SCATTERING SUGGESTS THAT A HEXAMER MAY BE REMARK 300 THE SIGNIFICANT OLIGOMERIZATION STATE IN SOLUTION BUT REMARK 300 IT MAY BE UNSTABLE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 330 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CE NZ REMARK 470 LYS A 18 CD CE NZ REMARK 470 LYS A 32 CG CD CE NZ REMARK 470 LYS A 67 NZ REMARK 470 HIS A 96 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 97 CE NZ REMARK 470 ASN A 99 CB CG OD1 ND2 REMARK 470 LYS A 104 NZ REMARK 470 GLU A 130 CD OE1 OE2 REMARK 470 GLU A 134 OE1 OE2 REMARK 470 LYS A 135 CD CE NZ REMARK 470 ILE A 139 CB CG1 CG2 CD1 REMARK 470 GLN A 204 CD OE1 NE2 REMARK 470 GLN A 206 OE1 NE2 REMARK 470 GLU A 306 CG CD OE1 OE2 REMARK 470 GLN A 316 CG CD OE1 NE2 REMARK 470 GLU A 319 CD OE1 OE2 REMARK 470 LYS A 329 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 295 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 31 42.14 -142.40 REMARK 500 ASP A 141 -68.52 -92.23 REMARK 500 LEU A 249 63.52 -104.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 332 REMARK 610 PG4 A 333 REMARK 610 PG4 A 334 REMARK 610 PG4 A 335 REMARK 610 PG4 A 336 REMARK 610 PG4 A 337 REMARK 610 PG4 A 338 REMARK 610 PG4 A 339 REMARK 610 PG4 A 341 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 331 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 332 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 333 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 334 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 335 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 336 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 337 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 338 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 339 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 340 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 341 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 342 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 372359 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 2R44 A 1 330 UNP Q11YS1 Q11YS1_CYTH3 1 330 SEQADV 2R44 GLY A 0 UNP Q11YS1 LEADER SEQUENCE SEQRES 1 A 331 GLY MSE GLU LEU LYS SER ALA GLU GLU LYS SER LEU TYR SEQRES 2 A 331 TYR ARG ASN LYS ILE LYS GLU VAL ILE ASP GLU VAL GLY SEQRES 3 A 331 LYS VAL VAL VAL GLY GLN LYS TYR MSE ILE ASN ARG LEU SEQRES 4 A 331 LEU ILE GLY ILE CYS THR GLY GLY HIS ILE LEU LEU GLU SEQRES 5 A 331 GLY VAL PRO GLY LEU ALA LYS THR LEU SER VAL ASN THR SEQRES 6 A 331 LEU ALA LYS THR MSE ASP LEU ASP PHE HIS ARG ILE GLN SEQRES 7 A 331 PHE THR PRO ASP LEU LEU PRO SER ASP LEU ILE GLY THR SEQRES 8 A 331 MSE ILE TYR ASN GLN HIS LYS GLY ASN PHE GLU VAL LYS SEQRES 9 A 331 LYS GLY PRO VAL PHE SER ASN PHE ILE LEU ALA ASP GLU SEQRES 10 A 331 VAL ASN ARG SER PRO ALA LYS VAL GLN SER ALA LEU LEU SEQRES 11 A 331 GLU CYS MSE GLN GLU LYS GLN VAL THR ILE GLY ASP THR SEQRES 12 A 331 THR TYR PRO LEU ASP ASN PRO PHE LEU VAL LEU ALA THR SEQRES 13 A 331 GLN ASN PRO VAL GLU GLN GLU GLY THR TYR PRO LEU PRO SEQRES 14 A 331 GLU ALA GLN VAL ASP ARG PHE MSE MSE LYS ILE HIS LEU SEQRES 15 A 331 THR TYR LEU ASP LYS GLU SER GLU LEU GLU VAL MSE ARG SEQRES 16 A 331 ARG VAL SER ASN MSE ASN PHE ASN TYR GLN VAL GLN LYS SEQRES 17 A 331 ILE VAL SER LYS ASN ASP VAL LEU GLU ILE ARG ASN GLU SEQRES 18 A 331 ILE ASN LYS VAL THR ILE SER GLU SER LEU GLU LYS TYR SEQRES 19 A 331 ILE ILE GLU LEU VAL PHE ALA THR ARG PHE PRO ALA GLU SEQRES 20 A 331 TYR GLY LEU GLU ALA GLU ALA SER TYR ILE LEU TYR GLY SEQRES 21 A 331 ALA SER THR ARG ALA ALA ILE ASN LEU ASN ARG VAL ALA SEQRES 22 A 331 LYS ALA MSE ALA PHE PHE ASN ASN ARG ASP TYR VAL LEU SEQRES 23 A 331 PRO GLU ASP ILE LYS GLU VAL ALA TYR ASP ILE LEU ASN SEQRES 24 A 331 HIS ARG ILE ILE LEU ASN TYR GLU ALA GLU ALA GLU GLY SEQRES 25 A 331 ILE SER THR ARG GLN ILE ILE GLU THR ILE LEU ARG LYS SEQRES 26 A 331 VAL ASN ILE THR LYS ALA MODRES 2R44 MSE A 1 MET SELENOMETHIONINE MODRES 2R44 MSE A 34 MET SELENOMETHIONINE MODRES 2R44 MSE A 69 MET SELENOMETHIONINE MODRES 2R44 MSE A 91 MET SELENOMETHIONINE MODRES 2R44 MSE A 132 MET SELENOMETHIONINE MODRES 2R44 MSE A 176 MET SELENOMETHIONINE MODRES 2R44 MSE A 177 MET SELENOMETHIONINE MODRES 2R44 MSE A 193 MET SELENOMETHIONINE MODRES 2R44 MSE A 199 MET SELENOMETHIONINE MODRES 2R44 MSE A 275 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 34 13 HET MSE A 69 8 HET MSE A 91 8 HET MSE A 132 8 HET MSE A 176 13 HET MSE A 177 8 HET MSE A 193 8 HET MSE A 199 8 HET MSE A 275 8 HET PO4 A 331 5 HET PG4 A 332 7 HET PG4 A 333 7 HET PG4 A 334 7 HET PG4 A 335 7 HET PG4 A 336 7 HET PG4 A 337 7 HET PG4 A 338 7 HET PG4 A 339 10 HET PG4 A 340 13 HET PG4 A 341 9 HET PG4 A 342 13 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM PG4 TETRAETHYLENE GLYCOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 PO4 O4 P 3- FORMUL 3 PG4 11(C8 H18 O5) FORMUL 14 HOH *111(H2 O) HELIX 1 1 MSE A 1 GLY A 25 1 25 HELIX 2 2 GLN A 31 GLY A 45 1 15 HELIX 3 3 GLY A 55 MSE A 69 1 15 HELIX 4 4 LEU A 83 ILE A 88 1 6 HELIX 5 5 GLU A 116 SER A 120 5 5 HELIX 6 6 PRO A 121 LYS A 135 1 15 HELIX 7 7 PRO A 168 ASP A 173 1 6 HELIX 8 8 ASP A 185 ASN A 198 1 14 HELIX 9 9 SER A 210 LYS A 223 1 14 HELIX 10 10 SER A 227 PHE A 243 1 17 HELIX 11 11 PRO A 244 GLY A 248 5 5 HELIX 12 12 LEU A 249 TYR A 255 1 7 HELIX 13 13 SER A 261 ASN A 279 1 19 HELIX 14 14 LEU A 285 ASN A 298 1 14 HELIX 15 15 ASN A 304 GLU A 310 1 7 HELIX 16 16 SER A 313 VAL A 325 1 13 SHEET 1 A 5 PHE A 73 GLN A 77 0 SHEET 2 A 5 PHE A 111 ASP A 115 1 O LEU A 113 N ILE A 76 SHEET 3 A 5 LEU A 151 GLN A 156 1 O LEU A 153 N ILE A 112 SHEET 4 A 5 ILE A 48 GLU A 51 1 N LEU A 50 O ALA A 154 SHEET 5 A 5 MSE A 177 HIS A 180 1 O ILE A 179 N GLU A 51 SHEET 1 B 2 GLY A 89 ASN A 94 0 SHEET 2 B 2 ASN A 99 LYS A 104 -1 O LYS A 103 N THR A 90 SHEET 1 C 2 GLN A 136 ILE A 139 0 SHEET 2 C 2 THR A 142 PRO A 145 -1 O TYR A 144 N VAL A 137 SHEET 1 D 2 ILE A 256 TYR A 258 0 SHEET 2 D 2 ILE A 302 LEU A 303 -1 O ILE A 302 N LEU A 257 LINK C GLY A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N GLU A 2 1555 1555 1.33 LINK C TYR A 33 N MSE A 34 1555 1555 1.33 LINK C MSE A 34 N ILE A 35 1555 1555 1.32 LINK C THR A 68 N MSE A 69 1555 1555 1.34 LINK C MSE A 69 N ASP A 70 1555 1555 1.34 LINK C THR A 90 N MSE A 91 1555 1555 1.33 LINK C MSE A 91 N ILE A 92 1555 1555 1.33 LINK C CYS A 131 N MSE A 132 1555 1555 1.34 LINK C MSE A 132 N GLN A 133 1555 1555 1.32 LINK C PHE A 175 N MSE A 176 1555 1555 1.32 LINK C MSE A 176 N MSE A 177 1555 1555 1.34 LINK C MSE A 177 N LYS A 178 1555 1555 1.33 LINK C VAL A 192 N MSE A 193 1555 1555 1.34 LINK C MSE A 193 N ARG A 194 1555 1555 1.33 LINK C ASN A 198 N MSE A 199 1555 1555 1.32 LINK C MSE A 199 N ASN A 200 1555 1555 1.34 LINK C ALA A 274 N MSE A 275 1555 1555 1.34 LINK C MSE A 275 N ALA A 276 1555 1555 1.33 CISPEP 1 ASN A 148 PRO A 149 0 1.24 SITE 1 AC1 8 TYR A 13 ASN A 212 ASP A 213 GLU A 216 SITE 2 AC1 8 GLY A 248 LYS A 324 PG4 A 341 HOH A 391 SITE 1 AC2 6 GLU A 51 LYS A 178 HIS A 180 ASN A 298 SITE 2 AC2 6 THR A 314 HOH A 427 SITE 1 AC3 3 LYS A 290 ILE A 327 PG4 A 338 SITE 1 AC4 6 GLY A 0 THR A 225 ILE A 226 SER A 227 SITE 2 AC4 6 TYR A 283 HOH A 358 SITE 1 AC5 5 MSE A 275 ASN A 279 GLU A 287 ASP A 288 SITE 2 AC5 5 PG4 A 339 SITE 1 AC6 5 ASN A 200 GLU A 216 ASN A 219 GLY A 248 SITE 2 AC6 5 GLU A 250 SITE 1 AC7 4 ASP A 70 LYS A 207 THR A 320 ARG A 323 SITE 1 AC8 3 LYS A 290 LEU A 322 PG4 A 333 SITE 1 AC9 5 ILE A 21 ASN A 36 MSE A 275 GLU A 291 SITE 2 AC9 5 PG4 A 335 SITE 1 BC1 4 LYS A 186 GLU A 236 GLU A 246 TYR A 247 SITE 1 BC2 3 GLU A 8 TYR A 13 PO4 A 331 SITE 1 BC3 5 VAL A 53 GLY A 55 ALA A 57 LYS A 58 SITE 2 BC3 5 LEU A 184 CRYST1 120.780 120.780 51.170 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008280 0.004780 0.000000 0.00000 SCALE2 0.000000 0.009560 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019540 0.00000 MASTER 473 0 22 16 11 0 19 6 0 0 0 26 END