HEADER IMMUNE SYSTEM 21-AUG-07 2R0W TITLE PFA2 FAB COMPLEXED WITH ABETA1-8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG2A FAB FRAGMENT LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: LIGHT CHAIN; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGG2A FAB FRAGMENT HEAVY CHAIN, FD PORTION; COMPND 7 CHAIN: H; COMPND 8 FRAGMENT: FD PORTION OF HEAVY CHAIN; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: AMYLOID BETA PEPTIDE FRAGMENT; COMPND 11 CHAIN: Q; COMPND 12 FRAGMENT: OCTAPEPTIDE; COMPND 13 SYNONYM: AMYLOID BETA A4 PROTEIN, FRAGMENT; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 OTHER_DETAILS: HYBRIDOMA; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 OTHER_DETAILS: HYBRIDOMA; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES KEYWDS IMMUNOGLOBULIN; ALZHEIMER DISEASE; AMYLOID, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.S.GARDBERG,C.DEALWIS REVDAT 4 25-OCT-17 2R0W 1 REMARK REVDAT 3 13-JUL-11 2R0W 1 VERSN REVDAT 2 24-FEB-09 2R0W 1 VERSN REVDAT 1 16-OCT-07 2R0W 0 JRNL AUTH A.S.GARDBERG,L.T.DICE,S.OU,R.L.RICH,E.HELMBRECHT,J.KO, JRNL AUTH 2 R.WETZEL,D.G.MYSZKA,P.H.PATTERSON,C.DEALWIS JRNL TITL MOLECULAR BASIS FOR PASSIVE IMMUNOTHERAPY OF ALZHEIMER'S JRNL TITL 2 DISEASE JRNL REF PROC.NATL.ACAD.SCI.USA V. 104 15659 2007 JRNL REFN ISSN 0027-8424 JRNL PMID 17895381 JRNL DOI 10.1073/PNAS.0705888104 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0007 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 13800 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 695 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 862 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.2890 REMARK 3 BIN FREE R VALUE SET COUNT : 52 REMARK 3 BIN FREE R VALUE : 0.4330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3417 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 63 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.35000 REMARK 3 B33 (A**2) : -0.32000 REMARK 3 B12 (A**2) : 0.17000 REMARK 3 B13 (A**2) : 0.14000 REMARK 3 B23 (A**2) : 0.07000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.369 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.337 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 31.490 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.890 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3502 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3062 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4771 ; 1.573 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7170 ; 0.843 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 438 ; 6.974 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;32.969 ;24.088 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ;16.408 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;14.995 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 543 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3862 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 687 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 677 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3116 ; 0.194 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1673 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2129 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 99 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.033 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.142 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 44 ; 0.242 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.248 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2207 ; 0.548 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 897 ; 0.109 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3588 ; 1.010 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1357 ; 1.436 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1183 ; 2.258 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : L 1 L 112 REMARK 3 RESIDUE RANGE : L 113 L 213 REMARK 3 ORIGIN FOR THE GROUP (A): -7.3609 3.4388 4.3300 REMARK 3 T TENSOR REMARK 3 T11: -0.0374 T22: 0.0645 REMARK 3 T33: 0.0741 T12: -0.0446 REMARK 3 T13: 0.0335 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.2593 L22: 0.1193 REMARK 3 L33: 3.9191 L12: -0.3576 REMARK 3 L13: 1.9584 L23: -0.4316 REMARK 3 S TENSOR REMARK 3 S11: -0.0115 S12: -0.2157 S13: 0.0585 REMARK 3 S21: 0.0492 S22: 0.0305 S23: 0.0804 REMARK 3 S31: -0.0883 S32: -0.6713 S33: -0.0190 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 123 REMARK 3 RESIDUE RANGE : H 124 H 137 REMARK 3 RESIDUE RANGE : H 144 H 213 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0519 -2.2790 -4.8590 REMARK 3 T TENSOR REMARK 3 T11: 0.0371 T22: -0.0393 REMARK 3 T33: 0.0303 T12: -0.0295 REMARK 3 T13: 0.0588 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.1167 L22: 0.8453 REMARK 3 L33: 4.7177 L12: -0.4124 REMARK 3 L13: 1.3443 L23: -1.0011 REMARK 3 S TENSOR REMARK 3 S11: 0.0455 S12: 0.2040 S13: -0.0456 REMARK 3 S21: 0.0489 S22: -0.0531 S23: 0.0046 REMARK 3 S31: 0.4190 S32: 0.3820 S33: 0.0076 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R0W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000044287. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13814 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 42.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG-MME 5000, 0.1 M OAC, PH 5.3, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS H 128 REMARK 465 GLY H 129 REMARK 465 ASP H 130 REMARK 465 THR H 131 REMARK 465 THR H 132 REMARK 465 GLY H 133 REMARK 465 ASP Q 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP L 109 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP H 72 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL L 51 -51.29 76.01 REMARK 500 THR L 69 -37.83 -136.87 REMARK 500 GLN L 165 126.99 -38.59 REMARK 500 LYS L 168 -75.20 -91.50 REMARK 500 LYS L 198 37.71 -74.70 REMARK 500 PHE H 27 158.97 179.68 REMARK 500 GLN H 39 109.39 -168.06 REMARK 500 ASP H 55 11.26 84.01 REMARK 500 THR H 68 90.64 -162.16 REMARK 500 ASN H 76 49.24 70.43 REMARK 500 SER H 82B 61.51 31.46 REMARK 500 VAL H 100 -45.64 -177.65 REMARK 500 TRP H 100D 168.11 176.91 REMARK 500 SER H 160 -49.84 -159.30 REMARK 500 SER H 172 -114.96 55.87 REMARK 500 THR H 187 -49.51 -163.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA L 214 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2IPT RELATED DB: PDB REMARK 900 RELATED ID: 2IPU RELATED DB: PDB REMARK 900 RELATED ID: 2IQA RELATED DB: PDB REMARK 900 RELATED ID: 2IQ9 RELATED DB: PDB REMARK 900 RELATED ID: 2R0W RELATED DB: PDB REMARK 900 RELATED ID: 2R0Z RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES L GLU 212 AND L YCM 213 HAVE VERY LONG REMARK 999 DISTANCE OF C-N BOND, 1.87, AND MAY NOT BE LINKED. DBREF 2R0W L 1 213 UNP A2NHM3 A2NHM3_MOUSE 1 219 DBREF 2R0W Q 1 8 UNP P05067 A4_HUMAN 672 679 DBREF 2R0W H 1 113 UNP Q811U5 Q811U5_MOUSE 1 118 SEQADV 2R0W SER L 27E UNP A2NHM3 THR 32 CONFLICT SEQADV 2R0W LEU L 96 UNP A2NHM3 ARG 101 CONFLICT SEQADV 2R0W ALA L 100 UNP A2NHM3 GLY 105 CONFLICT SEQADV 2R0W YCM L 213 UNP A2NHM3 CYS 219 MODIFIED RESIDUE SEQRES 1 L 219 ASP VAL LEU MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 219 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 219 GLN SER ILE VAL HIS SER ASN GLY ASN THR TYR LEU GLU SEQRES 4 L 219 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS LEU LEU SEQRES 5 L 219 ILE TYR LYS VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 219 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 219 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 219 TYR CYS PHE GLN GLY SER HIS VAL PRO LEU THR PHE GLY SEQRES 9 L 219 ALA GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 L 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU YCM SEQRES 1 H 223 GLN VAL THR LEU LYS GLU SER GLY PRO GLY ILE LEU LYS SEQRES 2 H 223 PRO SER GLN THR LEU SER LEU THR CYS SER LEU SER GLY SEQRES 3 H 223 PHE SER LEU ARG THR SER GLY MET GLY VAL GLY TRP ILE SEQRES 4 H 223 ARG GLN PRO SER GLY LYS GLY LEU GLU TRP LEU ALA HIS SEQRES 5 H 223 ILE TRP TRP ASP ASP ASP LYS ASN TYR ASN PRO SER LEU SEQRES 6 H 223 LYS SER GLN LEU THR ILE SER LYS ASP THR SER ARG ASN SEQRES 7 H 223 GLN VAL PHE LEU LYS ILE THR SER VAL ASP THR ALA ASP SEQRES 8 H 223 THR ALA THR TYR TYR CYS VAL ARG ARG ALA HIS ASN VAL SEQRES 9 H 223 VAL LEU GLY ASP TRP PHE ALA TYR TRP GLY GLN GLY THR SEQRES 10 H 223 LEU VAL THR VAL SER ALA ALA LYS THR THR ALA PRO SER SEQRES 11 H 223 VAL TYR PRO LEU ALA PRO VAL CYS GLY ASP THR THR GLY SEQRES 12 H 223 SER SER VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE SEQRES 13 H 223 PRO GLU PRO VAL THR LEU THR TRP ASN SER GLY SER LEU SEQRES 14 H 223 SER SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 223 ASP LEU TYR THR LEU SER SER SER VAL THR VAL THR SER SEQRES 16 H 223 SER THR TRP PRO SER GLN SER ILE THR CYS ASN VAL ALA SEQRES 17 H 223 HIS PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE GLU SEQRES 18 H 223 PRO ARG SEQRES 1 Q 8 ASP ALA GLU PHE ARG HIS ASP SER MODRES 2R0W YCM L 213 CYS S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HET YCM L 213 11 HET NA L 214 1 HETNAM YCM S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE HETNAM NA SODIUM ION HETSYN YCM CYSTEINE-S-ACETAMIDE FORMUL 1 YCM C5 H10 N2 O3 S FORMUL 4 NA NA 1+ FORMUL 5 HOH *63(H2 O) HELIX 1 1 GLU L 79 LEU L 83 5 5 HELIX 2 2 SER L 120 SER L 126 1 7 HELIX 3 3 LYS L 182 GLU L 186 1 5 HELIX 4 4 PRO H 61 LYS H 64 5 4 HELIX 5 5 ASP H 83 THR H 87 5 5 HELIX 6 6 SER H 156 SER H 158 5 3 HELIX 7 7 PRO H 200 SER H 203 5 4 SHEET 1 A 4 MET L 4 THR L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 A 4 ASP L 70 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 4 A 4 PHE L 62 SER L 67 -1 N SER L 63 O LYS L 74 SHEET 1 B 6 SER L 10 VAL L 13 0 SHEET 2 B 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 B 6 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 B 6 LEU L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 B 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 B 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 C 4 SER L 10 VAL L 13 0 SHEET 2 C 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 C 4 GLY L 84 GLN L 90 -1 N GLY L 84 O LEU L 104 SHEET 4 C 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 D 4 THR L 113 PHE L 117 0 SHEET 2 D 4 GLY L 128 PHE L 138 -1 O VAL L 132 N PHE L 117 SHEET 3 D 4 TYR L 172 THR L 181 -1 O LEU L 180 N ALA L 129 SHEET 4 D 4 VAL L 158 TRP L 162 -1 N SER L 161 O SER L 175 SHEET 1 E 4 SER L 152 GLU L 153 0 SHEET 2 E 4 ASN L 144 ILE L 149 -1 N ILE L 149 O SER L 152 SHEET 3 E 4 SER L 190 THR L 196 -1 O GLU L 194 N LYS L 146 SHEET 4 E 4 ILE L 204 ASN L 209 -1 O LYS L 206 N CYS L 193 SHEET 1 F 4 THR H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O SER H 23 N LYS H 5 SHEET 3 F 4 GLN H 77 ILE H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 F 4 ILE H 69 ASP H 72 -1 N SER H 70 O PHE H 79 SHEET 1 G 6 ILE H 11 LEU H 12 0 SHEET 2 G 6 THR H 107 VAL H 111 1 O THR H 110 N LEU H 12 SHEET 3 G 6 ALA H 88 ARG H 94 -1 N TYR H 90 O THR H 107 SHEET 4 G 6 GLY H 35 GLN H 39 -1 N ILE H 37 O TYR H 91 SHEET 5 G 6 GLU H 46 TRP H 52 -1 O GLU H 46 N ARG H 38 SHEET 6 G 6 LYS H 57 TYR H 59 -1 O ASN H 58 N HIS H 50 SHEET 1 H 4 SER H 120 LEU H 124 0 SHEET 2 H 4 SER H 135 TYR H 145 -1 O LEU H 141 N TYR H 122 SHEET 3 H 4 LEU H 174 THR H 184 -1 O VAL H 183 N VAL H 136 SHEET 4 H 4 VAL H 163 THR H 165 -1 N HIS H 164 O SER H 180 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 SER H 135 TYR H 145 -1 O LEU H 141 N TYR H 122 SHEET 3 I 4 LEU H 174 THR H 184 -1 O VAL H 183 N VAL H 136 SHEET 4 I 4 VAL H 169 GLN H 171 -1 N GLN H 171 O LEU H 174 SHEET 1 J 3 THR H 151 TRP H 154 0 SHEET 2 J 3 THR H 194 HIS H 199 -1 O ASN H 196 N THR H 153 SHEET 3 J 3 THR H 204 LYS H 209 -1 O VAL H 206 N VAL H 197 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 2 CYS L 133 CYS L 193 1555 1555 2.06 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 4 CYS H 140 CYS H 195 1555 1555 2.02 CISPEP 1 THR L 7 PRO L 8 0 2.53 CISPEP 2 VAL L 94 PRO L 95 0 3.59 CISPEP 3 TYR L 139 PRO L 140 0 1.16 CISPEP 4 PHE H 146 PRO H 147 0 -1.38 CISPEP 5 GLU H 148 PRO H 149 0 -5.43 CISPEP 6 TRP H 188 PRO H 189 0 -0.59 SITE 1 AC1 1 ASP L 82 CRYST1 42.793 43.327 58.456 92.51 94.96 90.55 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023368 0.000224 0.002040 0.00000 SCALE2 0.000000 0.023081 0.001035 0.00000 SCALE3 0.000000 0.000000 0.017188 0.00000 MASTER 347 0 2 7 43 0 1 6 0 0 0 36 END