HEADER APOPTOSIS 17-AUG-07 2R03 TITLE CRYSTAL STRUCTURE OF ALIX/AIP1 IN COMPLEX WITH THE YPDL LATE DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROGRAMMED CELL DEATH 6-INTERACTING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ALIX BRO1-V DOMAINS; COMPND 5 SYNONYM: PDCD6-INTERACTING PROTEIN, ALG-2-INTERACTING PROTEIN 1, COMPND 6 HP95; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: P6-GAG; COMPND 11 CHAIN: B; COMPND 12 FRAGMENT: UNP RESIDUES 456-463; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDCD6IP, AIP1, ALIX, KIAA1375; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) CODON+ RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET151/D-TOPO; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: THE SEQIENCE OF THIS PEPTIDE ANTURALLY EXISTS IN SOURCE 14 HUMAN IMMUNODEFICIENCY VIRUS TYPE 1(HIV-1). KEYWDS COILED-COIL, APOPTOSIS, CYTOPLASM, HOST-VIRUS INTERACTION, KEYWDS 2 POLYMORPHISM, PROTEIN TRANSPORT, TRANSPORT, CAPSID PROTEIN, CORE KEYWDS 3 PROTEIN, METAL-BINDING, VIRION, ZINC, ZINC-FINGER EXPDTA X-RAY DIFFRACTION AUTHOR C.P.HILL,Q.ZHAI,R.D.FISHER REVDAT 5 20-OCT-21 2R03 1 SEQADV REVDAT 4 25-OCT-17 2R03 1 REMARK REVDAT 3 24-FEB-09 2R03 1 VERSN REVDAT 2 05-FEB-08 2R03 1 JRNL REVDAT 1 18-DEC-07 2R03 0 JRNL AUTH Q.ZHAI,R.D.FISHER,H.Y.CHUNG,D.G.MYSZKA,W.I.SUNDQUIST, JRNL AUTH 2 C.P.HILL JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF ALIX INTERACTIONS WITH JRNL TITL 2 YPX(N)L LATE DOMAINS OF HIV-1 AND EIAV. JRNL REF NAT.STRUCT.MOL.BIOL. V. 15 43 2008 JRNL REFN ISSN 1545-9993 JRNL PMID 18066081 JRNL DOI 10.1038/NSMB1319 REMARK 2 REMARK 2 RESOLUTION. 2.59 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.59 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 29643 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1488 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.59 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.66 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1466 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5552 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 23 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.15000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 1.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -5.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.581 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.340 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.251 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.481 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5637 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7616 ; 1.384 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 703 ; 5.763 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 267 ;39.309 ;25.543 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1045 ;20.704 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;17.099 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 874 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4210 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2476 ; 0.220 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3837 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 146 ; 0.152 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 54 ; 0.177 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.094 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3628 ; 0.595 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5672 ; 1.026 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2232 ; 1.480 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1944 ; 2.388 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 62 REMARK 3 ORIGIN FOR THE GROUP (A): -31.0918 -19.6075 -32.9334 REMARK 3 T TENSOR REMARK 3 T11: 0.0585 T22: 0.3977 REMARK 3 T33: 0.3688 T12: 0.1167 REMARK 3 T13: -0.1669 T23: 0.2662 REMARK 3 L TENSOR REMARK 3 L11: 5.3299 L22: 2.6693 REMARK 3 L33: 0.3350 L12: -1.8702 REMARK 3 L13: 0.9520 L23: -0.1238 REMARK 3 S TENSOR REMARK 3 S11: -0.2967 S12: -0.4152 S13: 0.7109 REMARK 3 S21: -0.5332 S22: 0.2724 S23: 1.0551 REMARK 3 S31: -0.3259 S32: -0.7471 S33: 0.0243 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 63 A 114 REMARK 3 ORIGIN FOR THE GROUP (A): -23.5256 -24.8807 -38.5938 REMARK 3 T TENSOR REMARK 3 T11: 0.1815 T22: 0.2988 REMARK 3 T33: 0.2481 T12: 0.0047 REMARK 3 T13: -0.2323 T23: 0.3337 REMARK 3 L TENSOR REMARK 3 L11: 7.4559 L22: 5.1796 REMARK 3 L33: 0.8520 L12: 1.4736 REMARK 3 L13: 2.4446 L23: 0.9801 REMARK 3 S TENSOR REMARK 3 S11: -0.3836 S12: 1.4208 S13: 0.8116 REMARK 3 S21: -1.1412 S22: 0.2079 S23: 0.8459 REMARK 3 S31: -0.0081 S32: -0.2889 S33: 0.1757 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 115 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): -13.9337 -27.6224 -23.7172 REMARK 3 T TENSOR REMARK 3 T11: 0.1829 T22: 0.2410 REMARK 3 T33: 0.2565 T12: 0.0216 REMARK 3 T13: 0.1153 T23: 0.0938 REMARK 3 L TENSOR REMARK 3 L11: 4.0822 L22: 3.8071 REMARK 3 L33: 1.8984 L12: 0.1963 REMARK 3 L13: 0.4701 L23: -1.0485 REMARK 3 S TENSOR REMARK 3 S11: -0.1242 S12: -0.1059 S13: 0.5075 REMARK 3 S21: -0.1253 S22: 0.2336 S23: 0.6096 REMARK 3 S31: -0.1598 S32: -0.1732 S33: -0.1094 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 163 A 290 REMARK 3 ORIGIN FOR THE GROUP (A): 2.9564 -35.7608 -23.2002 REMARK 3 T TENSOR REMARK 3 T11: 0.2343 T22: 0.3083 REMARK 3 T33: 0.1275 T12: 0.0105 REMARK 3 T13: 0.1012 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 3.3218 L22: 1.9594 REMARK 3 L33: 1.6066 L12: -0.1512 REMARK 3 L13: 0.7080 L23: -0.6735 REMARK 3 S TENSOR REMARK 3 S11: 0.0782 S12: 0.2255 S13: -0.0449 REMARK 3 S21: -0.2306 S22: 0.0194 S23: 0.1324 REMARK 3 S31: 0.0476 S32: 0.0146 S33: -0.0976 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 291 A 348 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4325 -37.2926 -15.4154 REMARK 3 T TENSOR REMARK 3 T11: 0.1907 T22: 0.2682 REMARK 3 T33: 0.0286 T12: 0.0235 REMARK 3 T13: 0.1439 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 6.3339 L22: 2.1321 REMARK 3 L33: 1.6748 L12: 0.0334 REMARK 3 L13: 2.3128 L23: -1.0241 REMARK 3 S TENSOR REMARK 3 S11: 0.0632 S12: -0.0817 S13: -0.1434 REMARK 3 S21: 0.0150 S22: -0.0928 S23: -0.1936 REMARK 3 S31: -0.0962 S32: 0.1781 S33: 0.0295 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 349 A 392 REMARK 3 ORIGIN FOR THE GROUP (A): -53.4919 -40.8864 -42.3948 REMARK 3 T TENSOR REMARK 3 T11: -0.0364 T22: 0.4434 REMARK 3 T33: 0.4093 T12: -0.0837 REMARK 3 T13: -0.2602 T23: 0.3576 REMARK 3 L TENSOR REMARK 3 L11: 11.0631 L22: 3.2706 REMARK 3 L33: 2.9843 L12: 5.9516 REMARK 3 L13: 5.7384 L23: 3.1103 REMARK 3 S TENSOR REMARK 3 S11: -0.1306 S12: 0.4753 S13: 0.3100 REMARK 3 S21: -0.1640 S22: 0.0675 S23: 0.0867 REMARK 3 S31: -0.0514 S32: 0.5577 S33: 0.0631 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 393 A 471 REMARK 3 ORIGIN FOR THE GROUP (A): -78.5719 -30.9437 -58.7758 REMARK 3 T TENSOR REMARK 3 T11: 0.1010 T22: 0.1590 REMARK 3 T33: 0.2066 T12: -0.0544 REMARK 3 T13: 0.0610 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: 4.3234 L22: 5.1164 REMARK 3 L33: 0.4522 L12: 4.6889 REMARK 3 L13: 0.3333 L23: 0.2727 REMARK 3 S TENSOR REMARK 3 S11: 0.3888 S12: -0.2881 S13: 0.4165 REMARK 3 S21: 0.2404 S22: -0.1305 S23: 0.4995 REMARK 3 S31: 0.1230 S32: -0.0735 S33: -0.2584 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 472 A 533 REMARK 3 ORIGIN FOR THE GROUP (A): -69.3363 -24.8057 -61.9199 REMARK 3 T TENSOR REMARK 3 T11: 0.0870 T22: 0.1270 REMARK 3 T33: 0.3065 T12: -0.0029 REMARK 3 T13: 0.0589 T23: 0.0428 REMARK 3 L TENSOR REMARK 3 L11: 3.4432 L22: 6.2902 REMARK 3 L33: 0.6484 L12: 4.6421 REMARK 3 L13: 0.5949 L23: 0.6704 REMARK 3 S TENSOR REMARK 3 S11: -0.0436 S12: 0.4429 S13: -0.3818 REMARK 3 S21: -0.1674 S22: 0.3272 S23: -0.5392 REMARK 3 S31: -0.0469 S32: 0.0136 S33: -0.2836 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 534 A 646 REMARK 3 ORIGIN FOR THE GROUP (A): -74.0523 -57.4763 -50.9560 REMARK 3 T TENSOR REMARK 3 T11: 0.3108 T22: -0.0159 REMARK 3 T33: 0.4248 T12: 0.0028 REMARK 3 T13: -0.4008 T23: 0.1625 REMARK 3 L TENSOR REMARK 3 L11: 8.8029 L22: 0.9090 REMARK 3 L33: 4.1848 L12: 1.3465 REMARK 3 L13: 4.8619 L23: 0.7461 REMARK 3 S TENSOR REMARK 3 S11: 0.9195 S12: -0.0508 S13: -1.0373 REMARK 3 S21: 0.1524 S22: -0.1459 S23: -0.3068 REMARK 3 S31: 0.8527 S32: -0.0170 S33: -0.7736 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 647 A 698 REMARK 3 ORIGIN FOR THE GROUP (A): -74.7984 -31.8345 -56.7256 REMARK 3 T TENSOR REMARK 3 T11: 0.1734 T22: 0.1337 REMARK 3 T33: 0.2099 T12: -0.0867 REMARK 3 T13: 0.0183 T23: 0.0520 REMARK 3 L TENSOR REMARK 3 L11: 7.3389 L22: 8.4921 REMARK 3 L33: 0.7499 L12: 7.3846 REMARK 3 L13: 1.3060 L23: 0.7367 REMARK 3 S TENSOR REMARK 3 S11: 0.8908 S12: -0.3621 S13: -0.5933 REMARK 3 S21: 0.9714 S22: -0.3563 S23: -0.7758 REMARK 3 S31: 0.0641 S32: -0.0180 S33: -0.5345 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2R03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-07. REMARK 100 THE DEPOSITION ID IS D_1000044261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97946 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29646 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.590 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.59 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.30600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20-0.25 M MGCL2, 7-10% PEG 4000, 0.1 REMARK 280 M NAMES, PH 5.9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 286K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.19150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.28500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.19150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.28500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 940 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 434 OH TYR A 513 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 547 CD GLU A 547 OE1 0.451 REMARK 500 GLU A 547 CD GLU A 547 OE2 0.324 REMARK 500 ASN A 550 CG ASN A 550 ND2 0.154 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 547 OE1 - CD - OE2 ANGL. DEV. = 12.9 DEGREES REMARK 500 GLU A 547 CG - CD - OE1 ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 58 -89.50 -138.65 REMARK 500 ASP A 59 151.26 -48.89 REMARK 500 LYS A 81 -127.60 -80.54 REMARK 500 PHE A 82 128.14 -21.41 REMARK 500 PRO A 83 87.97 -66.95 REMARK 500 GLN A 88 7.69 -159.00 REMARK 500 SER A 103 28.31 -77.66 REMARK 500 SER A 172 54.33 -101.80 REMARK 500 LYS A 207 41.83 31.32 REMARK 500 LYS A 234 112.53 -175.32 REMARK 500 PRO A 238 151.20 -49.31 REMARK 500 PHE A 317 -65.82 -90.86 REMARK 500 ILE A 318 -81.20 -75.78 REMARK 500 ASP A 330 136.49 -37.26 REMARK 500 SER A 398 2.62 -60.26 REMARK 500 VAL A 408 -71.54 -48.01 REMARK 500 SER A 409 -159.91 -94.91 REMARK 500 PHE A 472 47.51 -144.13 REMARK 500 LEU A 523 -39.87 -37.73 REMARK 500 PRO A 526 143.75 -39.00 REMARK 500 MET A 543 52.97 -173.11 REMARK 500 GLN A 544 -79.07 -107.70 REMARK 500 SER A 546 119.82 -21.96 REMARK 500 ASN A 628 39.36 -96.30 REMARK 500 SER B 27 -48.53 -136.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLU A 547 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2R02 RELATED DB: PDB REMARK 900 STRUCTURE OF ALIX/AIP1 IN COMPLEX WITH THE HIV-1 YPLTSL LATE DOMAIN REMARK 900 RELATED ID: 2R05 RELATED DB: PDB DBREF 2R03 A 2 698 UNP Q8WUM4 PDC6I_HUMAN 2 698 DBREF 2R03 B 21 28 UNP P69732 GAG_EIAVY 456 463 SEQADV 2R03 TYR A 268 UNP Q8WUM4 LYS 268 ENGINEERED MUTATION SEQADV 2R03 TYR A 269 UNP Q8WUM4 LYS 269 ENGINEERED MUTATION SEQRES 1 A 697 ALA THR PHE ILE SER VAL GLN LEU LYS LYS THR SER GLU SEQRES 2 A 697 VAL ASP LEU ALA LYS PRO LEU VAL LYS PHE ILE GLN GLN SEQRES 3 A 697 THR TYR PRO SER GLY GLY GLU GLU GLN ALA GLN TYR CYS SEQRES 4 A 697 ARG ALA ALA GLU GLU LEU SER LYS LEU ARG ARG ALA ALA SEQRES 5 A 697 VAL GLY ARG PRO LEU ASP LYS HIS GLU GLY ALA LEU GLU SEQRES 6 A 697 THR LEU LEU ARG TYR TYR ASP GLN ILE CYS SER ILE GLU SEQRES 7 A 697 PRO LYS PHE PRO PHE SER GLU ASN GLN ILE CYS LEU THR SEQRES 8 A 697 PHE THR TRP LYS ASP ALA PHE ASP LYS GLY SER LEU PHE SEQRES 9 A 697 GLY GLY SER VAL LYS LEU ALA LEU ALA SER LEU GLY TYR SEQRES 10 A 697 GLU LYS SER CYS VAL LEU PHE ASN CYS ALA ALA LEU ALA SEQRES 11 A 697 SER GLN ILE ALA ALA GLU GLN ASN LEU ASP ASN ASP GLU SEQRES 12 A 697 GLY LEU LYS ILE ALA ALA LYS HIS TYR GLN PHE ALA SER SEQRES 13 A 697 GLY ALA PHE LEU HIS ILE LYS GLU THR VAL LEU SER ALA SEQRES 14 A 697 LEU SER ARG GLU PRO THR VAL ASP ILE SER PRO ASP THR SEQRES 15 A 697 VAL GLY THR LEU SER LEU ILE MET LEU ALA GLN ALA GLN SEQRES 16 A 697 GLU VAL PHE PHE LEU LYS ALA THR ARG ASP LYS MET LYS SEQRES 17 A 697 ASP ALA ILE ILE ALA LYS LEU ALA ASN GLN ALA ALA ASP SEQRES 18 A 697 TYR PHE GLY ASP ALA PHE LYS GLN CYS GLN TYR LYS ASP SEQRES 19 A 697 THR LEU PRO LYS GLU VAL PHE PRO VAL LEU ALA ALA LYS SEQRES 20 A 697 HIS CYS ILE MET GLN ALA ASN ALA GLU TYR HIS GLN SER SEQRES 21 A 697 ILE LEU ALA LYS GLN GLN TYR TYR PHE GLY GLU GLU ILE SEQRES 22 A 697 ALA ARG LEU GLN HIS ALA ALA GLU LEU ILE LYS THR VAL SEQRES 23 A 697 ALA SER ARG TYR ASP GLU TYR VAL ASN VAL LYS ASP PHE SEQRES 24 A 697 SER ASP LYS ILE ASN ARG ALA LEU ALA ALA ALA LYS LYS SEQRES 25 A 697 ASP ASN ASP PHE ILE TYR HIS ASP ARG VAL PRO ASP LEU SEQRES 26 A 697 LYS ASP LEU ASP PRO ILE GLY LYS ALA THR LEU VAL LYS SEQRES 27 A 697 SER THR PRO VAL ASN VAL PRO ILE SER GLN LYS PHE THR SEQRES 28 A 697 ASP LEU PHE GLU LYS MET VAL PRO VAL SER VAL GLN GLN SEQRES 29 A 697 SER LEU ALA ALA TYR ASN GLN ARG LYS ALA ASP LEU VAL SEQRES 30 A 697 ASN ARG SER ILE ALA GLN MET ARG GLU ALA THR THR LEU SEQRES 31 A 697 ALA ASN GLY VAL LEU ALA SER LEU ASN LEU PRO ALA ALA SEQRES 32 A 697 ILE GLU ASP VAL SER GLY ASP THR VAL PRO GLN SER ILE SEQRES 33 A 697 LEU THR LYS SER ARG SER VAL ILE GLU GLN GLY GLY ILE SEQRES 34 A 697 GLN THR VAL ASP GLN LEU ILE LYS GLU LEU PRO GLU LEU SEQRES 35 A 697 LEU GLN ARG ASN ARG GLU ILE LEU ASP GLU SER LEU ARG SEQRES 36 A 697 LEU LEU ASP GLU GLU GLU ALA THR ASP ASN ASP LEU ARG SEQRES 37 A 697 ALA LYS PHE LYS GLU ARG TRP GLN ARG THR PRO SER ASN SEQRES 38 A 697 GLU LEU TYR LYS PRO LEU ARG ALA GLU GLY THR ASN PHE SEQRES 39 A 697 ARG THR VAL LEU ASP LYS ALA VAL GLN ALA ASP GLY GLN SEQRES 40 A 697 VAL LYS GLU CYS TYR GLN SER HIS ARG ASP THR ILE VAL SEQRES 41 A 697 LEU LEU CYS LYS PRO GLU PRO GLU LEU ASN ALA ALA ILE SEQRES 42 A 697 PRO SER ALA ASN PRO ALA LYS THR MET GLN GLY SER GLU SEQRES 43 A 697 VAL VAL ASN VAL LEU LYS SER LEU LEU SER ASN LEU ASP SEQRES 44 A 697 GLU VAL LYS LYS GLU ARG GLU GLY LEU GLU ASN ASP LEU SEQRES 45 A 697 LYS SER VAL ASN PHE ASP MET THR SER LYS PHE LEU THR SEQRES 46 A 697 ALA LEU ALA GLN ASP GLY VAL ILE ASN GLU GLU ALA LEU SEQRES 47 A 697 SER VAL THR GLU LEU ASP ARG VAL TYR GLY GLY LEU THR SEQRES 48 A 697 THR LYS VAL GLN GLU SER LEU LYS LYS GLN GLU GLY LEU SEQRES 49 A 697 LEU LYS ASN ILE GLN VAL SER HIS GLN GLU PHE SER LYS SEQRES 50 A 697 MET LYS GLN SER ASN ASN GLU ALA ASN LEU ARG GLU GLU SEQRES 51 A 697 VAL LEU LYS ASN LEU ALA THR ALA TYR ASP ASN PHE VAL SEQRES 52 A 697 GLU LEU VAL ALA ASN LEU LYS GLU GLY THR LYS PHE TYR SEQRES 53 A 697 ASN GLU LEU THR GLU ILE LEU VAL ARG PHE GLN ASN LYS SEQRES 54 A 697 CYS SER ASP ILE VAL PHE ALA ARG SEQRES 1 B 8 ASN LEU TYR PRO ASP LEU SER GLU FORMUL 3 HOH *23(H2 O) HELIX 1 1 LEU A 17 GLN A 27 1 11 HELIX 2 2 GLY A 33 GLY A 55 1 23 HELIX 3 3 HIS A 61 GLU A 79 1 19 HELIX 4 4 SER A 115 GLN A 138 1 24 HELIX 5 5 ASN A 142 LEU A 171 1 30 HELIX 6 6 SER A 180 ASP A 206 1 27 HELIX 7 7 LYS A 209 TYR A 233 1 25 HELIX 8 8 GLU A 240 GLN A 267 1 28 HELIX 9 9 TYR A 269 TYR A 291 1 23 HELIX 10 10 VAL A 297 PHE A 317 1 21 HELIX 11 11 ASP A 325 LEU A 329 5 5 HELIX 12 12 PRO A 360 SER A 398 1 39 HELIX 13 13 ALA A 403 ASP A 407 5 5 HELIX 14 14 PRO A 414 GLN A 427 1 14 HELIX 15 15 GLY A 429 PHE A 472 1 44 HELIX 16 16 PRO A 480 CYS A 524 1 45 HELIX 17 17 PRO A 526 ILE A 534 1 9 HELIX 18 18 SER A 546 VAL A 576 1 31 HELIX 19 19 MET A 580 ASP A 591 1 12 HELIX 20 20 ASN A 595 SER A 637 1 43 HELIX 21 21 ASN A 643 ARG A 698 1 56 SHEET 1 A 2 PHE A 93 LYS A 96 0 SHEET 2 A 2 LYS A 110 LEU A 113 -1 O LEU A 113 N PHE A 93 CISPEP 1 VAL A 345 PRO A 346 0 8.12 CISPEP 2 LEU A 401 PRO A 402 0 6.37 CRYST1 146.383 98.570 72.799 90.00 107.07 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006831 0.000000 0.002097 0.00000 SCALE2 0.000000 0.010145 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014369 0.00000 MASTER 531 0 0 21 2 0 0 6 0 0 0 55 END