HEADER MEMBRANE PROTEIN 30-JUL-07 2QS3 TITLE CRYSTAL STRUCTURE OF THE GLUR5 LIGAND BINDING CORE DIMER IN COMPLEX TITLE 2 WITH UBP316 AT 1.76 ANGSTROMS RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMATE RECEPTOR, IONOTROPIC KAINATE 1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: GLUTAMATE RECEPTOR 5, GLUR-5, GLUR5; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GRIK1, GLUR5; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ORIGAMI B (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B (MODIFIED) KEYWDS MEMBRANE PROTEIN, CELL JUNCTION, GLYCOPROTEIN, ION TRANSPORT, IONIC KEYWDS 2 CHANNEL, PHOSPHORYLATION, POSTSYNAPTIC CELL MEMBRANE, RECEPTOR, RNA KEYWDS 3 EDITING, SYNAPSE, TRANSMEMBRANE, TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR G.M.ALUSHIN,D.E.JANE,M.L.MAYER REVDAT 6 20-OCT-21 2QS3 1 REMARK SEQADV REVDAT 5 02-AUG-17 2QS3 1 SOURCE REVDAT 4 22-AUG-12 2QS3 1 JRNL REVDAT 3 13-JUL-11 2QS3 1 VERSN REVDAT 2 24-FEB-09 2QS3 1 VERSN REVDAT 1 05-AUG-08 2QS3 0 JRNL AUTH S.L.DARGAN,V.R.CLARKE,G.M.ALUSHIN,J.L.SHERWOOD,R.NISTICO, JRNL AUTH 2 Z.A.BORTOLOTTO,A.M.OGDEN,D.BLEAKMAN,A.J.DOHERTY,D.LODGE, JRNL AUTH 3 M.L.MAYER,S.M.FITZJOHN,D.E.JANE,G.L.COLLINGRIDGE JRNL TITL ACET IS A HIGHLY POTENT AND SPECIFIC KAINATE RECEPTOR JRNL TITL 2 ANTAGONIST: CHARACTERISATION AND EFFECTS ON HIPPOCAMPAL JRNL TITL 3 MOSSY FIBRE FUNCTION. JRNL REF NEUROPHARMACOLOGY V. 56 121 2009 JRNL REFN ISSN 0028-3908 JRNL PMID 18789344 JRNL DOI 10.1016/J.NEUROPHARM.2008.08.016 REMARK 2 REMARK 2 RESOLUTION. 1.76 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.76 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 57079 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3022 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.76 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.81 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4156 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 223 REMARK 3 BIN FREE R VALUE : 0.2620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4014 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 409 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 24.47 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.78 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.113 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.072 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.141 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4456 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6036 ; 1.185 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 557 ; 5.013 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;33.055 ;24.526 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 844 ;13.698 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;13.307 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 645 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3355 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2149 ; 0.183 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3188 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 439 ; 0.143 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 107 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 49 ; 0.105 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2740 ; 0.515 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4334 ; 0.872 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1991 ; 1.219 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1702 ; 1.896 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): -13.2577 3.5183 16.0489 REMARK 3 T TENSOR REMARK 3 T11: .0538 T22: .0419 REMARK 3 T33: .0379 T12: -.0292 REMARK 3 T13: -.0229 T23: -.0100 REMARK 3 L TENSOR REMARK 3 L11: .6628 L22: 1.3510 REMARK 3 L33: 1.9794 L12: .4597 REMARK 3 L13: .4578 L23: .8724 REMARK 3 S TENSOR REMARK 3 S11: .1380 S12: -.0531 S13: -.0363 REMARK 3 S21: .1631 S22: .0489 S23: -.0852 REMARK 3 S31: .2200 S32: .0785 S33: -.1868 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 119 A 184 REMARK 3 ORIGIN FOR THE GROUP (A): 7.7888 -14.1900 13.0470 REMARK 3 T TENSOR REMARK 3 T11: .1805 T22: .2339 REMARK 3 T33: .1725 T12: .5099 REMARK 3 T13: -.4720 T23: -.2867 REMARK 3 L TENSOR REMARK 3 L11: 1.5604 L22: 9.9022 REMARK 3 L33: 5.0982 L12: .9689 REMARK 3 L13: -1.2427 L23: 1.4790 REMARK 3 S TENSOR REMARK 3 S11: -.2910 S12: -.5732 S13: -.9249 REMARK 3 S21: 1.4432 S22: .8967 S23: -1.7356 REMARK 3 S31: 1.4223 S32: 1.3899 S33: -.6057 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 185 A 254 REMARK 3 ORIGIN FOR THE GROUP (A): -4.1672 5.4182 7.8658 REMARK 3 T TENSOR REMARK 3 T11: -.0214 T22: .0834 REMARK 3 T33: .0983 T12: -.0259 REMARK 3 T13: -.0102 T23: -.1019 REMARK 3 L TENSOR REMARK 3 L11: .3852 L22: 1.3247 REMARK 3 L33: 2.2256 L12: .2631 REMARK 3 L13: .0797 L23: 1.1646 REMARK 3 S TENSOR REMARK 3 S11: .1623 S12: -.0940 S13: .0038 REMARK 3 S21: .0460 S22: .2701 S23: -.4464 REMARK 3 S31: .0034 S32: .5563 S33: -.4324 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 118 REMARK 3 ORIGIN FOR THE GROUP (A): -45.3715 -13.4798 16.0235 REMARK 3 T TENSOR REMARK 3 T11: .0408 T22: .0587 REMARK 3 T33: .0403 T12: -.0278 REMARK 3 T13: .0102 T23: .0253 REMARK 3 L TENSOR REMARK 3 L11: 1.4084 L22: .7051 REMARK 3 L33: 2.0679 L12: .4690 REMARK 3 L13: -.9053 L23: -.4322 REMARK 3 S TENSOR REMARK 3 S11: .0437 S12: .1659 S13: .0897 REMARK 3 S21: -.0559 S22: .1447 S23: .0358 REMARK 3 S31: -.0747 S32: -.2214 S33: -.1884 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 119 B 181 REMARK 3 ORIGIN FOR THE GROUP (A): -63.4008 7.2480 19.4371 REMARK 3 T TENSOR REMARK 3 T11: .2418 T22: .1088 REMARK 3 T33: .1511 T12: .3543 REMARK 3 T13: .2658 T23: .3222 REMARK 3 L TENSOR REMARK 3 L11: 9.5078 L22: 4.2469 REMARK 3 L33: 11.4584 L12: -.1586 REMARK 3 L13: -1.6148 L23: 5.1516 REMARK 3 S TENSOR REMARK 3 S11: .6457 S12: .8250 S13: 1.5547 REMARK 3 S21: -1.2215 S22: .1409 S23: .7090 REMARK 3 S31: -1.9800 S32: -.8437 S33: -.7866 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 182 B 254 REMARK 3 ORIGIN FOR THE GROUP (A): -44.0918 -3.2944 23.8129 REMARK 3 T TENSOR REMARK 3 T11: .0926 T22: -.0282 REMARK 3 T33: .0969 T12: -.0227 REMARK 3 T13: .1036 T23: .0232 REMARK 3 L TENSOR REMARK 3 L11: 1.3569 L22: .5766 REMARK 3 L33: 2.1399 L12: .2985 REMARK 3 L13: -1.1087 L23: -.0367 REMARK 3 S TENSOR REMARK 3 S11: .2555 S12: .0735 S13: .4689 REMARK 3 S21: -.1134 S22: .1741 S23: .0149 REMARK 3 S31: -.5739 S32: -.0298 S33: -.4297 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QS3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-07. REMARK 100 THE DEPOSITION ID IS D_1000043984. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI-220 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61223 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.760 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.76 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.38100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2F34 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 1K, 100MM TRIS-CL, 2.5MM REMARK 280 UBP316, PH 8.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.30200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.30200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.88300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 48.85100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.88300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 48.85100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 64.30200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.88300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.85100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 64.30200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.88300 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 48.85100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SYMMETRY OPERATOR TO BUILD THE BIOLOGICAL DIMER FOR REMARK 300 CHAIN A IS X,-Y,-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2240 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3140 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -97.76600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.30200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 501 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 784 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 781 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 ASN A 3 REMARK 465 GLY A 255 REMARK 465 CYS A 256 REMARK 465 PRO A 257 REMARK 465 SER A 258 REMARK 465 GLY B 1 REMARK 465 SER B 2 REMARK 465 ASN B 3 REMARK 465 GLY B 255 REMARK 465 CYS B 256 REMARK 465 PRO B 257 REMARK 465 SER B 258 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 190 O HOH A 802 1.90 REMARK 500 OE2 GLU B 190 O HOH B 631 1.93 REMARK 500 OH7 1PE A 602 O HOH A 766 2.10 REMARK 500 OD1 ASP A 52 O HOH A 758 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 13 111.05 -166.79 REMARK 500 ARG A 164 33.90 -96.93 REMARK 500 GLU B 13 110.79 -168.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UBE A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UBE B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2F34 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GLUR5 LIGAND BINDING CORE DIMER IN COMPLEX REMARK 900 WITH UBP310 AT 1.74 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 2F35 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GLUR5 LIGAND BINDING CORE DIMER IN COMPLEX REMARK 900 WITH UBP302 AT 1.87 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 2F36 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GLUR5 LIGAND BINDING CORE DIMER IN COMPLEX REMARK 900 WITH GLUTAMATE AT 2.1 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 1TXF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE GLUR5 LIGAND BINDING CORE DIMER IN COMPLEX REMARK 900 WITH GLUTAMATE AT 2.1 ANGSTROMS RESOLUTION REMARK 900 RELATED ID: 2QS1 RELATED DB: PDB REMARK 900 RELATED ID: 2QS2 RELATED DB: PDB REMARK 900 RELATED ID: 2QS4 RELATED DB: PDB DBREF 2QS3 A 3 116 UNP P22756 GRIK1_RAT 446 559 DBREF 2QS3 A 119 258 UNP P22756 GRIK1_RAT 682 821 DBREF 2QS3 B 3 116 UNP P22756 GRIK1_RAT 446 559 DBREF 2QS3 B 119 258 UNP P22756 GRIK1_RAT 682 821 SEQADV 2QS3 GLY A 1 UNP P22756 EXPRESSION TAG SEQADV 2QS3 SER A 2 UNP P22756 EXPRESSION TAG SEQADV 2QS3 GLY A 117 UNP P22756 LINKER SEQADV 2QS3 THR A 118 UNP P22756 LINKER SEQADV 2QS3 SER A 258 UNP P22756 GLU 821 ENGINEERED MUTATION SEQADV 2QS3 GLY B 1 UNP P22756 EXPRESSION TAG SEQADV 2QS3 SER B 2 UNP P22756 EXPRESSION TAG SEQADV 2QS3 GLY B 117 UNP P22756 LINKER SEQADV 2QS3 THR B 118 UNP P22756 LINKER SEQADV 2QS3 SER B 258 UNP P22756 GLU 821 ENGINEERED MUTATION SEQRES 1 A 258 GLY SER ASN ARG THR LEU ILE VAL THR THR ILE LEU GLU SEQRES 2 A 258 GLU PRO TYR VAL MET TYR ARG LYS SER ASP LYS PRO LEU SEQRES 3 A 258 TYR GLY ASN ASP ARG PHE GLU GLY TYR CYS LEU ASP LEU SEQRES 4 A 258 LEU LYS GLU LEU SER ASN ILE LEU GLY PHE LEU TYR ASP SEQRES 5 A 258 VAL LYS LEU VAL PRO ASP GLY LYS TYR GLY ALA GLN ASN SEQRES 6 A 258 ASP LYS GLY GLU TRP ASN GLY MET VAL LYS GLU LEU ILE SEQRES 7 A 258 ASP HIS ARG ALA ASP LEU ALA VAL ALA PRO LEU THR ILE SEQRES 8 A 258 THR TYR VAL ARG GLU LYS VAL ILE ASP PHE SER LYS PRO SEQRES 9 A 258 PHE MET THR LEU GLY ILE SER ILE LEU TYR ARG LYS GLY SEQRES 10 A 258 THR PRO ILE ASP SER ALA ASP ASP LEU ALA LYS GLN THR SEQRES 11 A 258 LYS ILE GLU TYR GLY ALA VAL ARG ASP GLY SER THR MET SEQRES 12 A 258 THR PHE PHE LYS LYS SER LYS ILE SER THR TYR GLU LYS SEQRES 13 A 258 MET TRP ALA PHE MET SER SER ARG GLN GLN SER ALA LEU SEQRES 14 A 258 VAL LYS ASN SER ASP GLU GLY ILE GLN ARG VAL LEU THR SEQRES 15 A 258 THR ASP TYR ALA LEU LEU MET GLU SER THR SER ILE GLU SEQRES 16 A 258 TYR VAL THR GLN ARG ASN CYS ASN LEU THR GLN ILE GLY SEQRES 17 A 258 GLY LEU ILE ASP SER LYS GLY TYR GLY VAL GLY THR PRO SEQRES 18 A 258 ILE GLY SER PRO TYR ARG ASP LYS ILE THR ILE ALA ILE SEQRES 19 A 258 LEU GLN LEU GLN GLU GLU GLY LYS LEU HIS MET MET LYS SEQRES 20 A 258 GLU LYS TRP TRP ARG GLY ASN GLY CYS PRO SER SEQRES 1 B 258 GLY SER ASN ARG THR LEU ILE VAL THR THR ILE LEU GLU SEQRES 2 B 258 GLU PRO TYR VAL MET TYR ARG LYS SER ASP LYS PRO LEU SEQRES 3 B 258 TYR GLY ASN ASP ARG PHE GLU GLY TYR CYS LEU ASP LEU SEQRES 4 B 258 LEU LYS GLU LEU SER ASN ILE LEU GLY PHE LEU TYR ASP SEQRES 5 B 258 VAL LYS LEU VAL PRO ASP GLY LYS TYR GLY ALA GLN ASN SEQRES 6 B 258 ASP LYS GLY GLU TRP ASN GLY MET VAL LYS GLU LEU ILE SEQRES 7 B 258 ASP HIS ARG ALA ASP LEU ALA VAL ALA PRO LEU THR ILE SEQRES 8 B 258 THR TYR VAL ARG GLU LYS VAL ILE ASP PHE SER LYS PRO SEQRES 9 B 258 PHE MET THR LEU GLY ILE SER ILE LEU TYR ARG LYS GLY SEQRES 10 B 258 THR PRO ILE ASP SER ALA ASP ASP LEU ALA LYS GLN THR SEQRES 11 B 258 LYS ILE GLU TYR GLY ALA VAL ARG ASP GLY SER THR MET SEQRES 12 B 258 THR PHE PHE LYS LYS SER LYS ILE SER THR TYR GLU LYS SEQRES 13 B 258 MET TRP ALA PHE MET SER SER ARG GLN GLN SER ALA LEU SEQRES 14 B 258 VAL LYS ASN SER ASP GLU GLY ILE GLN ARG VAL LEU THR SEQRES 15 B 258 THR ASP TYR ALA LEU LEU MET GLU SER THR SER ILE GLU SEQRES 16 B 258 TYR VAL THR GLN ARG ASN CYS ASN LEU THR GLN ILE GLY SEQRES 17 B 258 GLY LEU ILE ASP SER LYS GLY TYR GLY VAL GLY THR PRO SEQRES 18 B 258 ILE GLY SER PRO TYR ARG ASP LYS ILE THR ILE ALA ILE SEQRES 19 B 258 LEU GLN LEU GLN GLU GLU GLY LYS LEU HIS MET MET LYS SEQRES 20 B 258 GLU LYS TRP TRP ARG GLY ASN GLY CYS PRO SER HET CL A 501 1 HET 1PE A 602 16 HET UBE A 603 30 HET CL B 502 1 HET 1PE B 601 16 HET UBE B 602 30 HETNAM CL CHLORIDE ION HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM UBE 3-({3-[(2S)-2-AMINO-2-CARBOXYETHYL]-5-METHYL-2,6-DIOXO- HETNAM 2 UBE 3,6-DIHYDROPYRIMIDIN-1(2H)-YL}METHYL)-5- HETNAM 3 UBE PHENYLTHIOPHENE-2-CARBOXYLIC ACID HETSYN 1PE PEG400 FORMUL 3 CL 2(CL 1-) FORMUL 4 1PE 2(C10 H22 O6) FORMUL 5 UBE 2(C20 H19 N3 O6 S) FORMUL 9 HOH *409(H2 O) HELIX 1 1 TYR A 27 ASP A 30 5 4 HELIX 2 2 GLY A 34 GLY A 48 1 15 HELIX 3 3 ASN A 71 ASP A 79 1 9 HELIX 4 4 THR A 92 LYS A 97 1 6 HELIX 5 5 SER A 122 LYS A 128 1 7 HELIX 6 6 GLY A 140 SER A 149 1 10 HELIX 7 7 ILE A 151 ARG A 164 1 14 HELIX 8 8 ARG A 164 LEU A 169 1 6 HELIX 9 9 ASN A 172 THR A 183 1 12 HELIX 10 10 SER A 191 ASN A 201 1 11 HELIX 11 11 TYR A 226 GLU A 240 1 15 HELIX 12 12 GLY A 241 ARG A 252 1 12 HELIX 13 13 TYR B 27 ASP B 30 5 4 HELIX 14 14 GLY B 34 GLY B 48 1 15 HELIX 15 15 ASN B 71 ASP B 79 1 9 HELIX 16 16 THR B 92 LYS B 97 1 6 HELIX 17 17 SER B 122 LYS B 128 1 7 HELIX 18 18 GLY B 140 SER B 149 1 10 HELIX 19 19 ILE B 151 ARG B 164 1 14 HELIX 20 20 ARG B 164 LEU B 169 1 6 HELIX 21 21 ASN B 172 THR B 183 1 12 HELIX 22 22 SER B 191 ASN B 201 1 11 HELIX 23 23 TYR B 226 GLU B 240 1 15 HELIX 24 24 GLY B 241 ARG B 252 1 12 SHEET 1 A 3 LEU A 50 LEU A 55 0 SHEET 2 A 3 THR A 5 THR A 10 1 N VAL A 8 O LYS A 54 SHEET 3 A 3 LEU A 84 ALA A 85 1 O LEU A 84 N THR A 9 SHEET 1 B 2 MET A 18 TYR A 19 0 SHEET 2 B 2 PHE A 32 GLU A 33 -1 O GLU A 33 N MET A 18 SHEET 1 C 2 ILE A 99 PHE A 101 0 SHEET 2 C 2 GLY A 219 PRO A 221 -1 O THR A 220 N ASP A 100 SHEET 1 D 2 MET A 106 LEU A 108 0 SHEET 2 D 2 LYS A 214 TYR A 216 -1 O LYS A 214 N LEU A 108 SHEET 1 E 4 GLU A 133 GLY A 135 0 SHEET 2 E 4 TYR A 185 GLU A 190 1 O LEU A 188 N GLY A 135 SHEET 3 E 4 ILE A 110 ARG A 115 -1 N SER A 111 O MET A 189 SHEET 4 E 4 LEU A 204 ILE A 207 -1 O THR A 205 N TYR A 114 SHEET 1 F 3 LEU B 50 LEU B 55 0 SHEET 2 F 3 THR B 5 THR B 10 1 N VAL B 8 O LYS B 54 SHEET 3 F 3 LEU B 84 ALA B 85 1 O LEU B 84 N THR B 9 SHEET 1 G 2 MET B 18 TYR B 19 0 SHEET 2 G 2 PHE B 32 GLU B 33 -1 O GLU B 33 N MET B 18 SHEET 1 H 2 ILE B 99 PHE B 101 0 SHEET 2 H 2 GLY B 219 PRO B 221 -1 O THR B 220 N ASP B 100 SHEET 1 I 2 MET B 106 LEU B 108 0 SHEET 2 I 2 LYS B 214 TYR B 216 -1 O LYS B 214 N LEU B 108 SHEET 1 J 4 GLU B 133 GLY B 135 0 SHEET 2 J 4 TYR B 185 GLU B 190 1 O LEU B 188 N GLY B 135 SHEET 3 J 4 ILE B 110 ARG B 115 -1 N SER B 111 O MET B 189 SHEET 4 J 4 LEU B 204 ILE B 207 -1 O THR B 205 N TYR B 114 CISPEP 1 GLU A 14 PRO A 15 0 -2.72 CISPEP 2 GLU B 14 PRO B 15 0 -3.21 SITE 1 AC1 3 LYS A 103 ARG A 227 HOH A 614 SITE 1 AC2 3 LYS B 103 ARG B 227 HOH B 616 SITE 1 AC3 6 ARG B 20 LYS B 21 SER B 22 ASP B 23 SITE 2 AC3 6 HOH B 756 HOH B 781 SITE 1 AC4 8 ARG A 20 LYS A 21 SER A 22 ASP A 23 SITE 2 AC4 8 HOH A 629 HOH A 766 HOH A 767 HOH A 788 SITE 1 AC5 18 TYR A 61 PRO A 88 LEU A 89 THR A 90 SITE 2 AC5 18 ARG A 95 GLY A 140 SER A 141 THR A 142 SITE 3 AC5 18 SER A 173 GLU A 190 SER A 193 TYR A 216 SITE 4 AC5 18 HOH A 626 HOH A 667 HOH A 721 HOH A 723 SITE 5 AC5 18 HOH A 733 HOH A 779 SITE 1 AC6 17 TYR B 61 PRO B 88 LEU B 89 THR B 90 SITE 2 AC6 17 ARG B 95 GLY B 140 SER B 141 THR B 142 SITE 3 AC6 17 GLU B 190 SER B 193 TYR B 216 HOH B 627 SITE 4 AC6 17 HOH B 672 HOH B 737 HOH B 753 HOH B 768 SITE 5 AC6 17 HOH B 804 CRYST1 97.766 97.702 128.604 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010229 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010235 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007776 0.00000 MASTER 486 0 6 24 26 0 16 6 0 0 0 40 END