HEADER TRANSFERASE 25-JUL-07 2QQ0 TITLE THYMIDINE KINASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH TITLE 2 THYMIDINE + APPNHP COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TDK; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET14B KEYWDS THYMIDINE KINASE, TMTK, APPNHP, OPEN-CONFORMATION, ATP- KEYWDS 2 BINDING, CYTOPLASM, DNA SYNTHESIS, NUCLEOTIDE-BINDING, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR D.SEGURA-PENA,J.LICHTER,M.TRANI,M.KONRAD,A.LAVIE,S.LUTZ REVDAT 2 30-DEC-08 2QQ0 1 JRNL VERSN REVDAT 1 16-OCT-07 2QQ0 0 JRNL AUTH D.SEGURA-PENA,J.LICHTER,M.TRANI,M.KONRAD,A.LAVIE, JRNL AUTH 2 S.LUTZ JRNL TITL QUATERNARY STRUCTURE CHANGE AS A MECHANISM FOR THE JRNL TITL 2 REGULATION OF THYMIDINE KINASE 1-LIKE ENZYMES. JRNL REF STRUCTURE V. 15 1555 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 18073106 JRNL DOI 10.1016/J.STR.2007.09.025 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 49113 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 5515 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3045 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.71 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 354 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2659 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 100 REMARK 3 SOLVENT ATOMS : 383 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.43000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.11000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.079 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.086 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.053 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.397 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2801 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3787 ; 1.686 ; 2.023 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 5.491 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 112 ;34.038 ;24.643 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 510 ;13.484 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.998 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 439 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1986 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1476 ; 0.199 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1940 ; 0.312 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 384 ; 0.158 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.047 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 46 ; 0.191 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 31 ; 0.132 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1712 ; 1.096 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2709 ; 1.790 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1219 ; 2.897 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1078 ; 4.608 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 2QQ0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB043910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54800 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 28.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06500 REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.45 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.32000 REMARK 200 FOR SHELL : 4.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 60-65% MPD + 0.1 M SODIUM ACETATE, REMARK 280 PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.08000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.65500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.08000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.65500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE TETRAMERIC BIOLOGICAL ASSEMBLY IS GENERATED FROM THE REMARK 300 DIMER IN THE ASSIMETRIC UNIT BY THE OPERATION (-X, Y, -Z) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11370 ANGSTROM**2 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ILE A 41 REMARK 465 ASP A 42 REMARK 465 SER A 43 REMARK 465 ARG A 44 REMARK 465 TYR A 45 REMARK 465 HIS A 46 REMARK 465 SER A 47 REMARK 465 SER A 54 REMARK 465 GLY A 55 REMARK 465 ASN A 56 REMARK 465 GLY A 57 REMARK 465 LYS A 182 REMARK 465 ARG A 183 REMARK 465 VAL A 184 REMARK 465 MET B 1 REMARK 465 ILE B 41 REMARK 465 ASP B 42 REMARK 465 SER B 43 REMARK 465 ARG B 44 REMARK 465 TYR B 45 REMARK 465 HIS B 46 REMARK 465 SER B 54 REMARK 465 GLY B 55 REMARK 465 ASN B 56 REMARK 465 GLY B 57 REMARK 465 LYS B 182 REMARK 465 ARG B 183 REMARK 465 VAL B 184 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 49 CG SD CE REMARK 470 VAL A 51 CG1 CG2 REMARK 470 VAL B 58 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 729 O HOH B 805 2.02 REMARK 500 O HOH A 646 O HOH A 764 2.03 REMARK 500 O HOH A 633 O HOH A 718 2.13 REMARK 500 OD1 ASP A 98 O HOH A 757 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 83 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 147 16.11 -148.72 REMARK 500 ASP A 162 101.30 -163.24 REMARK 500 ASN B 147 17.32 -145.18 REMARK 500 ASP B 162 101.16 -163.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 450 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 17 OG1 REMARK 620 2 ANP A 601 O2B 90.5 REMARK 620 3 ANP A 601 O3G 173.9 95.6 REMARK 620 4 HOH A 749 O 88.8 86.6 91.4 REMARK 620 5 HOH A 616 O 80.6 96.1 98.9 169.0 REMARK 620 6 HOH A 617 O 86.9 170.1 87.1 83.8 92.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 452 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 17 OG1 REMARK 620 2 ADP B 701 O2B 87.0 REMARK 620 3 TMP B 601 O1P 166.4 104.5 REMARK 620 4 HOH B 844 O 92.0 88.8 95.5 REMARK 620 5 HOH B 725 O 80.4 95.1 91.2 171.2 REMARK 620 6 HOH B 797 O 83.0 167.6 86.4 84.3 90.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 140 SG REMARK 620 2 CYS A 143 SG 104.3 REMARK 620 3 CYS A 173 SG 116.5 120.6 REMARK 620 4 CYS A 176 SG 102.1 116.1 96.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 140 SG REMARK 620 2 CYS B 143 SG 102.6 REMARK 620 3 CYS B 173 SG 114.6 119.5 REMARK 620 4 CYS B 176 SG 103.6 119.4 96.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 450 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 452 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THM A 501 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TMP B 601 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ANP A 601 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP B 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QPO RELATED DB: PDB REMARK 900 RELATED ID: 2QQE RELATED DB: PDB DBREF 2QQ0 A 1 184 UNP Q9WYN2 KITH_THEMA 1 184 DBREF 2QQ0 B 1 184 UNP Q9WYN2 KITH_THEMA 1 184 SEQRES 1 A 184 MET SER GLY LYS LEU THR VAL ILE THR GLY PRO MET TYR SEQRES 2 A 184 SER GLY LYS THR THR GLU LEU LEU SER PHE VAL GLU ILE SEQRES 3 A 184 TYR LYS LEU GLY LYS LYS LYS VAL ALA VAL PHE LYS PRO SEQRES 4 A 184 LYS ILE ASP SER ARG TYR HIS SER THR MET ILE VAL SER SEQRES 5 A 184 HIS SER GLY ASN GLY VAL GLU ALA HIS VAL ILE GLU ARG SEQRES 6 A 184 PRO GLU GLU MET ARG LYS TYR ILE GLU GLU ASP THR ARG SEQRES 7 A 184 GLY VAL PHE ILE ASP GLU VAL GLN PHE PHE ASN PRO SER SEQRES 8 A 184 LEU PHE GLU VAL VAL LYS ASP LEU LEU ASP ARG GLY ILE SEQRES 9 A 184 ASP VAL PHE CYS ALA GLY LEU ASP LEU THR HIS LYS GLN SEQRES 10 A 184 ASN PRO PHE GLU THR THR ALA LEU LEU LEU SER LEU ALA SEQRES 11 A 184 ASP THR VAL ILE LYS LYS LYS ALA VAL CYS HIS ARG CYS SEQRES 12 A 184 GLY GLU TYR ASN ALA THR LEU THR LEU LYS VAL ALA GLY SEQRES 13 A 184 GLY GLU GLU GLU ILE ASP VAL GLY GLY GLN GLU LYS TYR SEQRES 14 A 184 ILE ALA VAL CYS ARG ASP CYS TYR ASN THR LEU LYS LYS SEQRES 15 A 184 ARG VAL SEQRES 1 B 184 MET SER GLY LYS LEU THR VAL ILE THR GLY PRO MET TYR SEQRES 2 B 184 SER GLY LYS THR THR GLU LEU LEU SER PHE VAL GLU ILE SEQRES 3 B 184 TYR LYS LEU GLY LYS LYS LYS VAL ALA VAL PHE LYS PRO SEQRES 4 B 184 LYS ILE ASP SER ARG TYR HIS SER THR MET ILE VAL SER SEQRES 5 B 184 HIS SER GLY ASN GLY VAL GLU ALA HIS VAL ILE GLU ARG SEQRES 6 B 184 PRO GLU GLU MET ARG LYS TYR ILE GLU GLU ASP THR ARG SEQRES 7 B 184 GLY VAL PHE ILE ASP GLU VAL GLN PHE PHE ASN PRO SER SEQRES 8 B 184 LEU PHE GLU VAL VAL LYS ASP LEU LEU ASP ARG GLY ILE SEQRES 9 B 184 ASP VAL PHE CYS ALA GLY LEU ASP LEU THR HIS LYS GLN SEQRES 10 B 184 ASN PRO PHE GLU THR THR ALA LEU LEU LEU SER LEU ALA SEQRES 11 B 184 ASP THR VAL ILE LYS LYS LYS ALA VAL CYS HIS ARG CYS SEQRES 12 B 184 GLY GLU TYR ASN ALA THR LEU THR LEU LYS VAL ALA GLY SEQRES 13 B 184 GLY GLU GLU GLU ILE ASP VAL GLY GLY GLN GLU LYS TYR SEQRES 14 B 184 ILE ALA VAL CYS ARG ASP CYS TYR ASN THR LEU LYS LYS SEQRES 15 B 184 ARG VAL HET ZN A 400 1 HET ZN B 402 1 HET MG A 450 1 HET MG B 452 1 HET THM A 501 17 HET TMP B 601 21 HET ANP A 601 31 HET ADP B 701 27 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM THM THYMIDINE HETNAM TMP THYMIDINE-5'-PHOSPHATE HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETSYN THM DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE FORMUL 3 ZN 2(ZN 2+) FORMUL 5 MG 2(MG 2+) FORMUL 7 THM C10 H14 N2 O5 FORMUL 8 TMP C10 H15 N2 O8 P FORMUL 9 ANP C10 H17 N6 O12 P3 FORMUL 10 ADP C10 H15 N5 O10 P2 FORMUL 11 HOH *383(H2 O) HELIX 1 1 GLY A 15 GLY A 30 1 16 HELIX 2 2 ARG A 65 ILE A 73 5 9 HELIX 3 3 GLU A 84 PHE A 88 5 5 HELIX 4 4 ASN A 89 PRO A 90 5 2 HELIX 5 5 SER A 91 ARG A 102 1 12 HELIX 6 6 PHE A 120 ALA A 130 1 11 HELIX 7 7 CYS A 173 LYS A 181 1 9 HELIX 8 8 GLY B 15 GLY B 30 1 16 HELIX 9 9 ARG B 65 ILE B 73 5 9 HELIX 10 10 GLU B 84 PHE B 88 5 5 HELIX 11 11 ASN B 89 PRO B 90 5 2 HELIX 12 12 SER B 91 ARG B 102 1 12 HELIX 13 13 PHE B 120 ALA B 130 1 11 HELIX 14 14 CYS B 173 LYS B 181 1 9 SHEET 1 A 6 HIS A 61 ILE A 63 0 SHEET 2 A 6 LYS A 33 PRO A 39 1 N VAL A 36 O HIS A 61 SHEET 3 A 6 THR A 77 ILE A 82 1 O ARG A 78 N LYS A 33 SHEET 4 A 6 ASP A 105 LEU A 111 1 O PHE A 107 N ILE A 82 SHEET 5 A 6 LEU A 5 GLY A 10 1 N ILE A 8 O CYS A 108 SHEET 6 A 6 THR A 132 LYS A 135 1 O ILE A 134 N THR A 9 SHEET 1 B 2 LEU A 150 LYS A 153 0 SHEET 2 B 2 TYR A 169 VAL A 172 -1 O ILE A 170 N LEU A 152 SHEET 1 C 6 HIS B 61 ILE B 63 0 SHEET 2 C 6 LYS B 33 PRO B 39 1 N VAL B 36 O HIS B 61 SHEET 3 C 6 THR B 77 ILE B 82 1 O PHE B 81 N PHE B 37 SHEET 4 C 6 ASP B 105 GLY B 110 1 O PHE B 107 N ILE B 82 SHEET 5 C 6 LEU B 5 THR B 9 1 N ILE B 8 O CYS B 108 SHEET 6 C 6 THR B 132 LYS B 135 1 O ILE B 134 N VAL B 7 SHEET 1 D 2 LEU B 150 LYS B 153 0 SHEET 2 D 2 TYR B 169 VAL B 172 -1 O ILE B 170 N LEU B 152 LINK OG1 THR A 17 MG MG A 450 1555 1555 2.15 LINK OG1 THR B 17 MG MG B 452 1555 1555 2.15 LINK MG MG A 450 O2B ANP A 601 1555 1555 2.02 LINK MG MG A 450 O3G ANP A 601 1555 1555 1.98 LINK MG MG B 452 O2B ADP B 701 1555 1555 1.92 LINK MG MG B 452 O1P TMP B 601 1555 1555 1.96 LINK MG MG A 450 O HOH A 749 1555 1555 2.12 LINK MG MG A 450 O HOH A 616 1555 1555 2.22 LINK MG MG A 450 O HOH A 617 1555 1555 2.17 LINK MG MG B 452 O HOH B 844 1555 1555 2.11 LINK MG MG B 452 O HOH B 725 1555 1555 2.22 LINK MG MG B 452 O HOH B 797 1555 1555 2.11 LINK SG CYS A 140 ZN ZN A 400 1555 1555 2.31 LINK SG CYS A 143 ZN ZN A 400 1555 1555 2.39 LINK SG CYS A 173 ZN ZN A 400 1555 1555 2.34 LINK SG CYS A 176 ZN ZN A 400 1555 1555 2.50 LINK SG CYS B 140 ZN ZN B 402 1555 1555 2.37 LINK SG CYS B 143 ZN ZN B 402 1555 1555 2.35 LINK SG CYS B 173 ZN ZN B 402 1555 1555 2.39 LINK SG CYS B 176 ZN ZN B 402 1555 1555 2.32 SITE 1 AC1 4 CYS A 140 CYS A 143 CYS A 173 CYS A 176 SITE 1 AC2 4 CYS B 140 CYS B 143 CYS B 173 CYS B 176 SITE 1 AC3 5 THR A 17 ANP A 601 HOH A 616 HOH A 617 SITE 2 AC3 5 HOH A 749 SITE 1 AC4 6 THR B 17 TMP B 601 ADP B 701 HOH B 725 SITE 2 AC4 6 HOH B 797 HOH B 844 SITE 1 AC5 16 GLU A 84 GLN A 86 PHE A 87 LEU A 111 SITE 2 AC5 16 THR A 114 HIS A 115 THR A 151 GLU A 160 SITE 3 AC5 16 ILE A 161 ASP A 162 VAL A 163 GLY A 164 SITE 4 AC5 16 TYR A 169 ANP A 601 HOH A 675 HOH A 767 SITE 1 AC6 24 MET B 12 LYS B 16 HIS B 53 GLU B 84 SITE 2 AC6 24 GLN B 86 PHE B 87 LEU B 111 THR B 114 SITE 3 AC6 24 HIS B 115 THR B 151 GLU B 160 ILE B 161 SITE 4 AC6 24 ASP B 162 VAL B 163 GLY B 164 TYR B 169 SITE 5 AC6 24 MG B 452 ADP B 701 HOH B 717 HOH B 725 SITE 6 AC6 24 HOH B 774 HOH B 797 HOH B 798 HOH B 844 SITE 1 AC7 23 MET A 12 TYR A 13 SER A 14 GLY A 15 SITE 2 AC7 23 LYS A 16 THR A 17 THR A 18 SER A 52 SITE 3 AC7 23 HIS A 53 GLU A 84 ALA A 138 VAL A 139 SITE 4 AC7 23 GLN A 166 MG A 450 THM A 501 HOH A 617 SITE 5 AC7 23 HOH A 640 HOH A 643 HOH A 675 HOH A 708 SITE 6 AC7 23 HOH A 749 GLU B 25 LEU B 29 SITE 1 AC8 20 GLU A 25 LEU A 29 TYR B 13 SER B 14 SITE 2 AC8 20 GLY B 15 LYS B 16 THR B 17 THR B 18 SITE 3 AC8 20 SER B 52 HIS B 53 ALA B 138 VAL B 139 SITE 4 AC8 20 MG B 452 TMP B 601 HOH B 725 HOH B 811 SITE 5 AC8 20 HOH B 828 HOH B 843 HOH B 844 HOH B 882 CRYST1 102.160 59.310 61.300 90.00 103.02 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009789 0.000000 0.002264 0.00000 SCALE2 0.000000 0.016861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016744 0.00000 MASTER 409 0 8 14 16 0 27 6 0 0 0 30 END