HEADER LIPID BINDING PROTEIN 14-JUL-07 2QM9 TITLE TROGLITAZONE BOUND TO FATTY ACID BINDING PROTEIN 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FATTY ACID-BINDING PROTEIN, ADIPOCYTE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: AFABP, ADIPOCYTE LIPID-BINDING PROTEIN, ALBP, A-FABP, P2 COMPND 5 ADIPOCYTE PROTEIN, MYELIN P2 PROTEIN HOMOLOG, 3T3-L1 LIPID-BINDING COMPND 6 PROTEIN, 422 PROTEIN, P15; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: FABP4, AP2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BETA CLAMSHELL, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.E.GILLILAN,S.D.AYERS,N.NOY REVDAT 4 25-OCT-17 2QM9 1 REMARK REVDAT 3 13-JUL-11 2QM9 1 VERSN REVDAT 2 24-FEB-09 2QM9 1 VERSN REVDAT 1 09-OCT-07 2QM9 0 JRNL AUTH R.E.GILLILAN,S.D.AYERS,N.NOY JRNL TITL STRUCTURAL BASIS FOR ACTIVATION OF FATTY ACID-BINDING JRNL TITL 2 PROTEIN 4 JRNL REF J.MOL.BIOL. V. 372 1246 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17761196 JRNL DOI 10.1016/J.JMB.2007.07.040 REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 16232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 863 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.31 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.43 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2179 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.3150 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2076 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 108 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.14000 REMARK 3 B22 (A**2) : -0.26000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.306 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.244 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.179 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.401 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.927 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2180 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1951 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2941 ; 1.457 ; 1.997 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4530 ; 0.786 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 269 ; 7.385 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 334 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2373 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 421 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 535 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2642 ; 0.241 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1649 ; 0.112 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 66 ; 0.146 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 18 ; 0.143 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 68 ; 0.252 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 2 ; 0.368 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1334 ; 0.472 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2149 ; 0.903 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 846 ; 1.387 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 792 ; 2.317 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -5 A 3 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5571 -23.8690 11.1400 REMARK 3 T TENSOR REMARK 3 T11: 0.4208 T22: 0.3070 REMARK 3 T33: 0.8733 T12: -0.0238 REMARK 3 T13: -0.0083 T23: -0.1360 REMARK 3 L TENSOR REMARK 3 L11: 28.3543 L22: 34.5788 REMARK 3 L33: 85.2112 L12: -19.1606 REMARK 3 L13: -9.7501 L23: 6.6454 REMARK 3 S TENSOR REMARK 3 S11: 0.8391 S12: 2.5845 S13: 1.9346 REMARK 3 S21: 3.6407 S22: -1.1981 S23: -1.8991 REMARK 3 S31: -2.2279 S32: 3.1957 S33: 0.3589 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 40 REMARK 3 ORIGIN FOR THE GROUP (A): -5.1345 -8.1484 23.9733 REMARK 3 T TENSOR REMARK 3 T11: 0.1833 T22: 0.2860 REMARK 3 T33: 0.1862 T12: 0.0159 REMARK 3 T13: 0.0069 T23: -0.2293 REMARK 3 L TENSOR REMARK 3 L11: 6.4158 L22: 6.9591 REMARK 3 L33: 0.6878 L12: -4.4912 REMARK 3 L13: -1.7894 L23: 1.0780 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.8765 S13: 0.2868 REMARK 3 S21: 0.4520 S22: 0.0121 S23: 0.3037 REMARK 3 S31: -0.1903 S32: 0.1262 S33: -0.0141 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 41 A 131 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7474 -13.1007 13.4653 REMARK 3 T TENSOR REMARK 3 T11: 0.1074 T22: 0.0903 REMARK 3 T33: 0.1243 T12: -0.0273 REMARK 3 T13: 0.0194 T23: -0.0633 REMARK 3 L TENSOR REMARK 3 L11: 3.5990 L22: 2.3248 REMARK 3 L33: 2.1217 L12: -0.5315 REMARK 3 L13: 0.3398 L23: 0.2477 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: -0.3734 S13: 0.2573 REMARK 3 S21: 0.0432 S22: 0.0294 S23: 0.0509 REMARK 3 S31: -0.1144 S32: -0.0388 S33: -0.0514 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 40 REMARK 3 ORIGIN FOR THE GROUP (A): -20.7933 -35.8691 20.2871 REMARK 3 T TENSOR REMARK 3 T11: 0.1497 T22: 0.2366 REMARK 3 T33: 0.1025 T12: -0.0106 REMARK 3 T13: 0.0093 T23: 0.1467 REMARK 3 L TENSOR REMARK 3 L11: 7.2553 L22: 9.2548 REMARK 3 L33: 1.9523 L12: -3.3044 REMARK 3 L13: -0.9377 L23: -0.2348 REMARK 3 S TENSOR REMARK 3 S11: -0.0727 S12: -1.0313 S13: -0.5125 REMARK 3 S21: 0.2655 S22: 0.0289 S23: -0.0665 REMARK 3 S31: 0.2429 S32: 0.1639 S33: 0.0439 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 41 B 131 REMARK 3 ORIGIN FOR THE GROUP (A): -21.2619 -30.2511 11.6613 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: 0.0872 REMARK 3 T33: 0.0914 T12: -0.0058 REMARK 3 T13: 0.0099 T23: 0.0570 REMARK 3 L TENSOR REMARK 3 L11: 4.2308 L22: 2.2545 REMARK 3 L33: 3.1419 L12: -0.0143 REMARK 3 L13: -0.7997 L23: 0.0660 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.4054 S13: -0.2373 REMARK 3 S21: 0.0220 S22: 0.0130 S23: 0.0239 REMARK 3 S31: 0.0895 S32: 0.0655 S33: -0.0135 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043775. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17515 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE, 0.05 M K/NA PHOSPHATE, PH 4.5, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.94300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.06350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.70700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.06350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.94300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.70700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -23 REMARK 465 SER A -22 REMARK 465 HIS A -21 REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 SER A -18 REMARK 465 MET A -17 REMARK 465 THR A -16 REMARK 465 GLY A -15 REMARK 465 GLY A -14 REMARK 465 ASN A -13 REMARK 465 ASN A -12 REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 ARG A -9 REMARK 465 GLY A -8 REMARK 465 GLY B -23 REMARK 465 SER B -22 REMARK 465 HIS B -21 REMARK 465 MET B -20 REMARK 465 ALA B -19 REMARK 465 SER B -18 REMARK 465 MET B -17 REMARK 465 THR B -16 REMARK 465 GLY B -15 REMARK 465 GLY B -14 REMARK 465 ASN B -13 REMARK 465 ASN B -12 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 ARG B -9 REMARK 465 GLY B -8 REMARK 465 SER B -7 REMARK 465 SER B -6 REMARK 465 SER B -5 REMARK 465 LYS B -4 REMARK 465 VAL B -3 REMARK 465 TYR B -2 REMARK 465 LYS B -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A -7 OG REMARK 470 SER A -6 OG REMARK 470 SER A -5 OG REMARK 470 LYS A -4 CG CD CE NZ REMARK 470 VAL A -3 CG1 CG2 REMARK 470 TYR A -2 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A -1 CG CD CE NZ REMARK 470 LYS A 31 CB CG CD CE NZ REMARK 470 LYS B 21 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 17 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ASP B 47 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A -4 -172.28 157.86 REMARK 500 VAL A -3 -124.78 -132.18 REMARK 500 ASP A 2 -23.28 81.43 REMARK 500 LYS A 37 75.51 40.49 REMARK 500 LYS B 37 65.28 60.31 REMARK 500 ASP B 77 18.25 81.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 ACCORDING TO AUTHORS, LIGAND TDZ IS STEREOCHEMICALLY IMPURE REMARK 600 (MODELED AS 2R-5R). ATOMS WITH MISSING DENSITY ARE MARKED REMARK 600 WITH ZERO OCCUPANCY. REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 TDZ A 201 REMARK 615 TDZ B 202 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDZ A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TDZ B 202 DBREF 2QM9 A 0 131 UNP P04117 FABPA_MOUSE 1 132 DBREF 2QM9 B 0 131 UNP P04117 FABPA_MOUSE 1 132 SEQADV 2QM9 GLY A -23 UNP P04117 EXPRESSION TAG SEQADV 2QM9 SER A -22 UNP P04117 EXPRESSION TAG SEQADV 2QM9 HIS A -21 UNP P04117 EXPRESSION TAG SEQADV 2QM9 MET A -20 UNP P04117 EXPRESSION TAG SEQADV 2QM9 ALA A -19 UNP P04117 EXPRESSION TAG SEQADV 2QM9 SER A -18 UNP P04117 EXPRESSION TAG SEQADV 2QM9 MET A -17 UNP P04117 EXPRESSION TAG SEQADV 2QM9 THR A -16 UNP P04117 EXPRESSION TAG SEQADV 2QM9 GLY A -15 UNP P04117 EXPRESSION TAG SEQADV 2QM9 GLY A -14 UNP P04117 EXPRESSION TAG SEQADV 2QM9 ASN A -13 UNP P04117 EXPRESSION TAG SEQADV 2QM9 ASN A -12 UNP P04117 EXPRESSION TAG SEQADV 2QM9 MET A -11 UNP P04117 EXPRESSION TAG SEQADV 2QM9 GLY A -10 UNP P04117 EXPRESSION TAG SEQADV 2QM9 ARG A -9 UNP P04117 EXPRESSION TAG SEQADV 2QM9 GLY A -8 UNP P04117 EXPRESSION TAG SEQADV 2QM9 SER A -7 UNP P04117 EXPRESSION TAG SEQADV 2QM9 SER A -6 UNP P04117 EXPRESSION TAG SEQADV 2QM9 SER A -5 UNP P04117 EXPRESSION TAG SEQADV 2QM9 LYS A -4 UNP P04117 EXPRESSION TAG SEQADV 2QM9 VAL A -3 UNP P04117 EXPRESSION TAG SEQADV 2QM9 TYR A -2 UNP P04117 EXPRESSION TAG SEQADV 2QM9 LYS A -1 UNP P04117 EXPRESSION TAG SEQADV 2QM9 GLY B -23 UNP P04117 EXPRESSION TAG SEQADV 2QM9 SER B -22 UNP P04117 EXPRESSION TAG SEQADV 2QM9 HIS B -21 UNP P04117 EXPRESSION TAG SEQADV 2QM9 MET B -20 UNP P04117 EXPRESSION TAG SEQADV 2QM9 ALA B -19 UNP P04117 EXPRESSION TAG SEQADV 2QM9 SER B -18 UNP P04117 EXPRESSION TAG SEQADV 2QM9 MET B -17 UNP P04117 EXPRESSION TAG SEQADV 2QM9 THR B -16 UNP P04117 EXPRESSION TAG SEQADV 2QM9 GLY B -15 UNP P04117 EXPRESSION TAG SEQADV 2QM9 GLY B -14 UNP P04117 EXPRESSION TAG SEQADV 2QM9 ASN B -13 UNP P04117 EXPRESSION TAG SEQADV 2QM9 ASN B -12 UNP P04117 EXPRESSION TAG SEQADV 2QM9 MET B -11 UNP P04117 EXPRESSION TAG SEQADV 2QM9 GLY B -10 UNP P04117 EXPRESSION TAG SEQADV 2QM9 ARG B -9 UNP P04117 EXPRESSION TAG SEQADV 2QM9 GLY B -8 UNP P04117 EXPRESSION TAG SEQADV 2QM9 SER B -7 UNP P04117 EXPRESSION TAG SEQADV 2QM9 SER B -6 UNP P04117 EXPRESSION TAG SEQADV 2QM9 SER B -5 UNP P04117 EXPRESSION TAG SEQADV 2QM9 LYS B -4 UNP P04117 EXPRESSION TAG SEQADV 2QM9 VAL B -3 UNP P04117 EXPRESSION TAG SEQADV 2QM9 TYR B -2 UNP P04117 EXPRESSION TAG SEQADV 2QM9 LYS B -1 UNP P04117 EXPRESSION TAG SEQRES 1 A 155 GLY SER HIS MET ALA SER MET THR GLY GLY ASN ASN MET SEQRES 2 A 155 GLY ARG GLY SER SER SER LYS VAL TYR LYS MET CYS ASP SEQRES 3 A 155 ALA PHE VAL GLY THR TRP LYS LEU VAL SER SER GLU ASN SEQRES 4 A 155 PHE ASP ASP TYR MET LYS GLU VAL GLY VAL GLY PHE ALA SEQRES 5 A 155 THR ARG LYS VAL ALA GLY MET ALA LYS PRO ASN MET ILE SEQRES 6 A 155 ILE SER VAL ASN GLY ASP LEU VAL THR ILE ARG SER GLU SEQRES 7 A 155 SER THR PHE LYS ASN THR GLU ILE SER PHE LYS LEU GLY SEQRES 8 A 155 VAL GLU PHE ASP GLU ILE THR ALA ASP ASP ARG LYS VAL SEQRES 9 A 155 LYS SER ILE ILE THR LEU ASP GLY GLY ALA LEU VAL GLN SEQRES 10 A 155 VAL GLN LYS TRP ASP GLY LYS SER THR THR ILE LYS ARG SEQRES 11 A 155 LYS ARG ASP GLY ASP LYS LEU VAL VAL GLU CYS VAL MET SEQRES 12 A 155 LYS GLY VAL THR SER THR ARG VAL TYR GLU ARG ALA SEQRES 1 B 155 GLY SER HIS MET ALA SER MET THR GLY GLY ASN ASN MET SEQRES 2 B 155 GLY ARG GLY SER SER SER LYS VAL TYR LYS MET CYS ASP SEQRES 3 B 155 ALA PHE VAL GLY THR TRP LYS LEU VAL SER SER GLU ASN SEQRES 4 B 155 PHE ASP ASP TYR MET LYS GLU VAL GLY VAL GLY PHE ALA SEQRES 5 B 155 THR ARG LYS VAL ALA GLY MET ALA LYS PRO ASN MET ILE SEQRES 6 B 155 ILE SER VAL ASN GLY ASP LEU VAL THR ILE ARG SER GLU SEQRES 7 B 155 SER THR PHE LYS ASN THR GLU ILE SER PHE LYS LEU GLY SEQRES 8 B 155 VAL GLU PHE ASP GLU ILE THR ALA ASP ASP ARG LYS VAL SEQRES 9 B 155 LYS SER ILE ILE THR LEU ASP GLY GLY ALA LEU VAL GLN SEQRES 10 B 155 VAL GLN LYS TRP ASP GLY LYS SER THR THR ILE LYS ARG SEQRES 11 B 155 LYS ARG ASP GLY ASP LYS LEU VAL VAL GLU CYS VAL MET SEQRES 12 B 155 LYS GLY VAL THR SER THR ARG VAL TYR GLU ARG ALA HET SO4 A 303 5 HET SO4 A 301 5 HET TDZ A 201 31 HET SO4 B 302 5 HET TDZ B 202 31 HETNAM SO4 SULFATE ION HETNAM TDZ (5R)-5-(4-{[(2R)-6-HYDROXY-2,5,7,8-TETRAMETHYL-3,4- HETNAM 2 TDZ DIHYDRO-2H-CHROMEN-2-YL]METHOXY}BENZYL)-1,3- HETNAM 3 TDZ THIAZOLIDINE-2,4-DIONE HETSYN TDZ TROGLITAZONE FORMUL 3 SO4 3(O4 S 2-) FORMUL 5 TDZ 2(C24 H27 N O5 S) FORMUL 8 HOH *108(H2 O) HELIX 1 1 ASN A 15 GLY A 24 1 10 HELIX 2 2 GLY A 26 MET A 35 1 10 HELIX 3 3 MET B 0 PHE B 4 5 5 HELIX 4 4 ASN B 15 GLY B 24 1 10 HELIX 5 5 GLY B 26 MET B 35 1 10 SHEET 1 A10 THR A 60 PHE A 64 0 SHEET 2 A10 LEU A 48 GLU A 54 -1 N VAL A 49 O PHE A 64 SHEET 3 A10 ASN A 39 ASN A 45 -1 N ILE A 41 O ARG A 52 SHEET 4 A10 GLY A 6 GLU A 14 -1 N TRP A 8 O MET A 40 SHEET 5 A10 VAL A 122 ARG A 130 -1 O GLU A 129 N LYS A 9 SHEET 6 A10 LYS A 112 MET A 119 -1 N VAL A 115 O ARG A 126 SHEET 7 A10 LYS A 100 ASP A 109 -1 N LYS A 107 O VAL A 114 SHEET 8 A10 ALA A 90 TRP A 97 -1 N LEU A 91 O ARG A 106 SHEET 9 A10 LYS A 79 ASP A 87 -1 N LYS A 81 O LYS A 96 SHEET 10 A10 PHE A 70 ILE A 73 -1 N GLU A 72 O VAL A 80 SHEET 1 B10 THR B 60 PHE B 64 0 SHEET 2 B10 LEU B 48 GLU B 54 -1 N VAL B 49 O PHE B 64 SHEET 3 B10 ASN B 39 ASN B 45 -1 N ILE B 41 O ARG B 52 SHEET 4 B10 GLY B 6 GLU B 14 -1 N TRP B 8 O MET B 40 SHEET 5 B10 VAL B 122 ARG B 130 -1 O THR B 125 N GLU B 14 SHEET 6 B10 LYS B 112 MET B 119 -1 N LEU B 113 O TYR B 128 SHEET 7 B10 LYS B 100 ASP B 109 -1 N LYS B 107 O VAL B 114 SHEET 8 B10 ALA B 90 TRP B 97 -1 N LEU B 91 O ARG B 106 SHEET 9 B10 LYS B 79 ASP B 87 -1 N THR B 85 O VAL B 92 SHEET 10 B10 PHE B 70 ILE B 73 -1 N GLU B 72 O VAL B 80 CISPEP 1 SER A -7 SER A -6 0 20.39 CISPEP 2 SER A -5 LYS A -4 0 -7.67 SITE 1 AC1 5 SER B 13 GLU B 14 ASN B 15 PHE B 16 SITE 2 AC1 5 ASP B 17 SITE 1 AC2 6 SER A 13 GLU A 14 ASN A 15 PHE A 16 SITE 2 AC2 6 ASP A 17 HOH A 337 SITE 1 AC3 5 SER A -5 ARG A 108 ARG A 130 ARG B 108 SITE 2 AC3 5 ARG B 130 SITE 1 AC4 8 TYR A 19 VAL A 25 PHE A 57 ASP A 76 SITE 2 AC4 8 ARG A 78 CYS A 117 TYR A 128 HOH A 339 SITE 1 AC5 7 TYR B 19 MET B 20 VAL B 25 ASP B 76 SITE 2 AC5 7 ARG B 78 ILE B 104 CYS B 117 CRYST1 49.886 81.414 94.127 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020046 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012283 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010624 0.00000 MASTER 464 0 5 5 20 0 10 6 0 0 0 24 END