HEADER HYDROLASE 06-JUL-07 2QJ8 TITLE CRYSTAL STRUCTURE OF AN ASPARTOACYLASE FAMILY PROTEIN (MLR6093) FROM TITLE 2 MESORHIZOBIUM LOTI MAFF303099 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: MLR6093 PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MESORHIZOBIUM LOTI; SOURCE 3 ORGANISM_TAXID: 266835; SOURCE 4 STRAIN: MAFF303099; SOURCE 5 GENE: NP_106651.1, MLR6093; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, PSI-2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 6 24-JUL-19 2QJ8 1 REMARK LINK REVDAT 5 18-OCT-17 2QJ8 1 REMARK REVDAT 4 13-JUL-11 2QJ8 1 VERSN REVDAT 3 23-MAR-11 2QJ8 1 HEADER TITLE KEYWDS REVDAT 2 24-FEB-09 2QJ8 1 VERSN REVDAT 1 24-JUL-07 2QJ8 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN MLR6093 JRNL TITL 2 (NP_106651.1) FROM MESORHIZOBIUM LOTI AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 45330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2286 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3072 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE SET COUNT : 168 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4499 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.79 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.57 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.57000 REMARK 3 B22 (A**2) : -0.25000 REMARK 3 B33 (A**2) : 1.82000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.194 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.146 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.618 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4779 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3227 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6544 ; 1.786 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7947 ; 1.367 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 650 ; 4.003 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;31.683 ;23.596 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 801 ;11.336 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;11.075 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 782 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5331 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 910 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 854 ; 0.165 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3335 ; 0.149 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2238 ; 0.160 ; 0.500 REMARK 3 NON-BONDED TORSION OTHERS (A): 2507 ; 0.082 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 431 ; 0.169 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.075 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 54 ; 0.133 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.193 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3231 ; 1.792 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1249 ; 0.663 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5038 ; 2.530 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1795 ; 4.346 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1480 ; 5.896 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 2 A 331 4 REMARK 3 1 B 2 B 330 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 3168 ; 0.710 ; 0.500 REMARK 3 MEDIUM THERMAL 1 A (A**2): 3168 ; 1.380 ; 2.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 331 REMARK 3 ORIGIN FOR THE GROUP (A): 75.1759 58.1777 18.9259 REMARK 3 T TENSOR REMARK 3 T11: -0.0732 T22: -0.1095 REMARK 3 T33: -0.1154 T12: -0.0067 REMARK 3 T13: 0.0067 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.5840 L22: 1.1526 REMARK 3 L33: 0.0660 L12: -0.5899 REMARK 3 L13: 0.2117 L23: 0.1086 REMARK 3 S TENSOR REMARK 3 S11: -0.0256 S12: 0.0071 S13: 0.1081 REMARK 3 S21: 0.0290 S22: 0.0005 S23: 0.1150 REMARK 3 S31: -0.0454 S32: -0.0420 S33: 0.0251 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 330 REMARK 3 ORIGIN FOR THE GROUP (A): 48.5042 37.8733 14.2727 REMARK 3 T TENSOR REMARK 3 T11: 0.0106 T22: -0.0189 REMARK 3 T33: -0.0237 T12: -0.0022 REMARK 3 T13: -0.0471 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 5.0263 L22: 0.0375 REMARK 3 L33: 0.1652 L12: -0.3734 REMARK 3 L13: -0.9071 L23: 0.0713 REMARK 3 S TENSOR REMARK 3 S11: 0.0904 S12: 0.0790 S13: -0.4393 REMARK 3 S21: 0.0279 S22: -0.0698 S23: -0.0017 REMARK 3 S31: 0.0596 S32: 0.0138 S33: -0.0206 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO REMARK 3 PARTIAL S-MET INCORPORATION. REMARK 3 3. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 4. RESIDUES A210-A215, A238-A247, B26-B28, B91-B115, B156-B160, REMARK 3 B183-B188 AND B213-B214 ARE DISORDERED AND HAVE NOT BEEN MODELLED. REMARK 4 REMARK 4 2QJ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043666. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL1-5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978662 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL REMARK 200 OPTICS : 1M LONG RH COATED BENT REMARK 200 CYLINDRICAL MIRROR FOR REMARK 200 HORIZONTAL AND VERTICAL FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45402 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 29.643 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : 0.10500 REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.78200 REMARK 200 R SYM FOR SHELL (I) : 0.78200 REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NANODROP, 20.0% PEG 3350, 0.2M REMARK 280 POTASSIUM CITRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.52700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.31600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.31600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.52700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAINS WHICH FORM A DIMER BASED ON REMARK 300 CRYSTAL PACKING ANALYSIS. SIZE EXCLUSION CHROMATOGRAPHY REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. SEE REMARK 350 FOR INFORMATION REMARK 300 ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 VAL A 210 REMARK 465 VAL A 211 REMARK 465 SER A 212 REMARK 465 ALA A 213 REMARK 465 GLU A 214 REMARK 465 ALA A 215 REMARK 465 GLU A 238 REMARK 465 TYR A 239 REMARK 465 PRO A 240 REMARK 465 THR A 241 REMARK 465 PHE A 242 REMARK 465 ARG A 243 REMARK 465 GLN A 244 REMARK 465 GLN A 245 REMARK 465 LYS A 246 REMARK 465 THR A 247 REMARK 465 GLY B 0 REMARK 465 GLY B 26 REMARK 465 ALA B 27 REMARK 465 ASP B 28 REMARK 465 VAL B 91 REMARK 465 GLN B 92 REMARK 465 ALA B 93 REMARK 465 TRP B 94 REMARK 465 THR B 95 REMARK 465 ARG B 96 REMARK 465 ASN B 97 REMARK 465 THR B 98 REMARK 465 PRO B 99 REMARK 465 ILE B 100 REMARK 465 ASP B 101 REMARK 465 GLY B 102 REMARK 465 LYS B 103 REMARK 465 ASN B 104 REMARK 465 LEU B 105 REMARK 465 ASN B 106 REMARK 465 ARG B 107 REMARK 465 VAL B 108 REMARK 465 PHE B 109 REMARK 465 PRO B 110 REMARK 465 GLY B 111 REMARK 465 ARG B 112 REMARK 465 SER B 113 REMARK 465 ASP B 114 REMARK 465 GLY B 115 REMARK 465 PRO B 156 REMARK 465 ILE B 157 REMARK 465 ALA B 158 REMARK 465 ASP B 159 REMARK 465 ILE B 160 REMARK 465 HIS B 183 REMARK 465 ASN B 184 REMARK 465 GLU B 185 REMARK 465 THR B 186 REMARK 465 ASP B 187 REMARK 465 GLY B 188 REMARK 465 ALA B 213 REMARK 465 GLU B 214 REMARK 465 ARG B 331 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 25 NZ REMARK 470 GLU A 43 CD OE1 OE2 REMARK 470 LYS A 69 CE NZ REMARK 470 ARG A 76 CD NE CZ NH1 NH2 REMARK 470 GLU A 185 CG CD OE1 OE2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 LYS A 260 CE NZ REMARK 470 MSE A 289 CE REMARK 470 ARG A 331 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 25 CD CE NZ REMARK 470 GLU B 30 CD OE1 OE2 REMARK 470 HIS B 54 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 73 CD OE1 OE2 REMARK 470 ARG B 196 CD NE CZ NH1 NH2 REMARK 470 LYS B 234 CE NZ REMARK 470 LYS B 246 NZ REMARK 470 LYS B 304 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 66 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 185 62.81 -101.67 REMARK 500 MSE A 274 -7.49 83.13 REMARK 500 GLU B 3 145.87 44.49 REMARK 500 ASN B 87 73.28 -118.88 REMARK 500 MSE B 274 -5.05 89.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 375129 RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE REMARK 999 LEAVING ONLY A GLYCINE FOLLOWED BY THE TARGET SEQUENCE. DBREF 2QJ8 A 1 331 UNP Q98AA0 Q98AA0_RHILO 1 331 DBREF 2QJ8 B 1 331 UNP Q98AA0 Q98AA0_RHILO 1 331 SEQADV 2QJ8 GLY A 0 UNP Q98AA0 LEADER SEQUENCE SEQADV 2QJ8 MSE A 1 UNP Q98AA0 MET 1 MODIFIED RESIDUE SEQADV 2QJ8 MSE A 163 UNP Q98AA0 MET 163 MODIFIED RESIDUE SEQADV 2QJ8 MSE A 189 UNP Q98AA0 MET 189 MODIFIED RESIDUE SEQADV 2QJ8 MSE A 274 UNP Q98AA0 MET 274 MODIFIED RESIDUE SEQADV 2QJ8 MSE A 289 UNP Q98AA0 MET 289 MODIFIED RESIDUE SEQADV 2QJ8 MSE A 314 UNP Q98AA0 MET 314 MODIFIED RESIDUE SEQADV 2QJ8 GLY B 0 UNP Q98AA0 LEADER SEQUENCE SEQADV 2QJ8 MSE B 1 UNP Q98AA0 MET 1 MODIFIED RESIDUE SEQADV 2QJ8 MSE B 163 UNP Q98AA0 MET 163 MODIFIED RESIDUE SEQADV 2QJ8 MSE B 189 UNP Q98AA0 MET 189 MODIFIED RESIDUE SEQADV 2QJ8 MSE B 274 UNP Q98AA0 MET 274 MODIFIED RESIDUE SEQADV 2QJ8 MSE B 289 UNP Q98AA0 MET 289 MODIFIED RESIDUE SEQADV 2QJ8 MSE B 314 UNP Q98AA0 MET 314 MODIFIED RESIDUE SEQRES 1 A 332 GLY MSE SER GLU ALA PRO HIS LEU THR PHE ASP LEU ASP SEQRES 2 A 332 THR PRO GLY VAL SER THR GLY HIS LEU VAL VAL PRO LYS SEQRES 3 A 332 GLY ALA ASP CYS GLU ALA LEU SER LEU PRO VAL PHE SER SEQRES 4 A 332 CYS ASN ARG GLY GLU GLY PRO SER LEU LEU ILE THR GLY SEQRES 5 A 332 GLY ASN HIS GLY ASN GLU LEU GLN GLY PRO ILE LEU ALA SEQRES 6 A 332 ARG ARG LEU VAL LYS TRP LEU PRO GLU ALA GLN ARG CYS SEQRES 7 A 332 GLY ARG ILE ILE ILE VAL PRO GLU ILE ASN PRO LEU ALA SEQRES 8 A 332 VAL GLN ALA TRP THR ARG ASN THR PRO ILE ASP GLY LYS SEQRES 9 A 332 ASN LEU ASN ARG VAL PHE PRO GLY ARG SER ASP GLY SER SEQRES 10 A 332 VAL SER GLU ARG ILE ALA ASP ALA ILE SER ARG LEU LEU SEQRES 11 A 332 LEU PRO VAL VAL ASP THR VAL LEU ASP LEU HIS SER PHE SEQRES 12 A 332 GLY PRO THR TRP ASP CYS ALA PRO SER ILE ILE SER HIS SEQRES 13 A 332 PRO ILE ALA ASP ILE ASP GLN MSE THR LYS THR VAL SER SEQRES 14 A 332 ILE SER LYS ALA PHE LYS LEU PRO VAL THR LEU LEU TRP SEQRES 15 A 332 GLU HIS ASN GLU THR ASP GLY MSE PHE ASP THR LEU VAL SEQRES 16 A 332 HIS ARG GLN GLY LYS THR PHE ILE CYS THR GLU PHE GLY SEQRES 17 A 332 GLY GLY VAL VAL SER ALA GLU ALA LEU THR ILE TYR GLU SEQRES 18 A 332 ALA GLY VAL ARG ASN GLY LEU ILE ALA LEU GLY LEU VAL SEQRES 19 A 332 LYS GLY LYS ALA GLU TYR PRO THR PHE ARG GLN GLN LYS SEQRES 20 A 332 THR GLY GLN THR LEU GLU THR THR SER SER ASP GLN LEU SEQRES 21 A 332 LYS SER PRO SER PRO GLY ILE PHE GLU PRO ARG CYS SER SEQRES 22 A 332 VAL MSE ASP GLU VAL GLU GLN GLY ASP VAL VAL GLY VAL SEQRES 23 A 332 LEU HIS PRO MSE GLY SER LEU SER ALA ALA SER ILE ASP SEQRES 24 A 332 ILE ARG ALA GLN SER LYS SER THR VAL PHE ALA ILE ARG SEQRES 25 A 332 SER ALA MSE TYR VAL GLN GLY ASN GLU GLU VAL ALA ILE SEQRES 26 A 332 LEU ALA ARG PRO LEU ALA ARG SEQRES 1 B 332 GLY MSE SER GLU ALA PRO HIS LEU THR PHE ASP LEU ASP SEQRES 2 B 332 THR PRO GLY VAL SER THR GLY HIS LEU VAL VAL PRO LYS SEQRES 3 B 332 GLY ALA ASP CYS GLU ALA LEU SER LEU PRO VAL PHE SER SEQRES 4 B 332 CYS ASN ARG GLY GLU GLY PRO SER LEU LEU ILE THR GLY SEQRES 5 B 332 GLY ASN HIS GLY ASN GLU LEU GLN GLY PRO ILE LEU ALA SEQRES 6 B 332 ARG ARG LEU VAL LYS TRP LEU PRO GLU ALA GLN ARG CYS SEQRES 7 B 332 GLY ARG ILE ILE ILE VAL PRO GLU ILE ASN PRO LEU ALA SEQRES 8 B 332 VAL GLN ALA TRP THR ARG ASN THR PRO ILE ASP GLY LYS SEQRES 9 B 332 ASN LEU ASN ARG VAL PHE PRO GLY ARG SER ASP GLY SER SEQRES 10 B 332 VAL SER GLU ARG ILE ALA ASP ALA ILE SER ARG LEU LEU SEQRES 11 B 332 LEU PRO VAL VAL ASP THR VAL LEU ASP LEU HIS SER PHE SEQRES 12 B 332 GLY PRO THR TRP ASP CYS ALA PRO SER ILE ILE SER HIS SEQRES 13 B 332 PRO ILE ALA ASP ILE ASP GLN MSE THR LYS THR VAL SER SEQRES 14 B 332 ILE SER LYS ALA PHE LYS LEU PRO VAL THR LEU LEU TRP SEQRES 15 B 332 GLU HIS ASN GLU THR ASP GLY MSE PHE ASP THR LEU VAL SEQRES 16 B 332 HIS ARG GLN GLY LYS THR PHE ILE CYS THR GLU PHE GLY SEQRES 17 B 332 GLY GLY VAL VAL SER ALA GLU ALA LEU THR ILE TYR GLU SEQRES 18 B 332 ALA GLY VAL ARG ASN GLY LEU ILE ALA LEU GLY LEU VAL SEQRES 19 B 332 LYS GLY LYS ALA GLU TYR PRO THR PHE ARG GLN GLN LYS SEQRES 20 B 332 THR GLY GLN THR LEU GLU THR THR SER SER ASP GLN LEU SEQRES 21 B 332 LYS SER PRO SER PRO GLY ILE PHE GLU PRO ARG CYS SER SEQRES 22 B 332 VAL MSE ASP GLU VAL GLU GLN GLY ASP VAL VAL GLY VAL SEQRES 23 B 332 LEU HIS PRO MSE GLY SER LEU SER ALA ALA SER ILE ASP SEQRES 24 B 332 ILE ARG ALA GLN SER LYS SER THR VAL PHE ALA ILE ARG SEQRES 25 B 332 SER ALA MSE TYR VAL GLN GLY ASN GLU GLU VAL ALA ILE SEQRES 26 B 332 LEU ALA ARG PRO LEU ALA ARG MODRES 2QJ8 MSE A 163 MET SELENOMETHIONINE MODRES 2QJ8 MSE A 189 MET SELENOMETHIONINE MODRES 2QJ8 MSE A 274 MET SELENOMETHIONINE MODRES 2QJ8 MSE A 289 MET SELENOMETHIONINE MODRES 2QJ8 MSE A 314 MET SELENOMETHIONINE MODRES 2QJ8 MSE B 1 MET SELENOMETHIONINE MODRES 2QJ8 MSE B 163 MET SELENOMETHIONINE MODRES 2QJ8 MSE B 189 MET SELENOMETHIONINE MODRES 2QJ8 MSE B 274 MET SELENOMETHIONINE MODRES 2QJ8 MSE B 289 MET SELENOMETHIONINE MODRES 2QJ8 MSE B 314 MET SELENOMETHIONINE HET MSE A 163 13 HET MSE A 189 13 HET MSE A 274 8 HET MSE A 289 11 HET MSE A 314 13 HET MSE B 1 8 HET MSE B 163 8 HET MSE B 189 8 HET MSE B 274 8 HET MSE B 289 13 HET MSE B 314 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 3 HOH *282(H2 O) HELIX 1 1 LEU A 58 GLN A 75 1 18 HELIX 2 2 ASN A 87 TRP A 94 1 8 HELIX 3 3 SER A 116 LEU A 129 1 14 HELIX 4 4 LEU A 130 VAL A 133 5 4 HELIX 5 5 ASP A 159 ALA A 172 1 14 HELIX 6 6 GLY A 188 VAL A 194 1 7 HELIX 7 7 LEU A 216 LEU A 230 1 15 HELIX 8 8 THR A 254 SER A 256 5 3 HELIX 9 9 LEU B 58 GLN B 75 1 18 HELIX 10 10 SER B 116 LEU B 129 1 14 HELIX 11 11 LEU B 130 VAL B 133 5 4 HELIX 12 12 ASP B 161 PHE B 173 1 13 HELIX 13 13 MSE B 189 ARG B 196 1 8 HELIX 14 14 ALA B 215 GLY B 231 1 17 HELIX 15 15 THR B 254 SER B 256 5 3 SHEET 1 A13 HIS A 6 LEU A 7 0 SHEET 2 A13 GLY A 15 VAL A 23 -1 O VAL A 22 N HIS A 6 SHEET 3 A13 LEU A 32 ARG A 41 -1 O SER A 38 N SER A 17 SHEET 4 A13 GLY A 78 VAL A 83 -1 O GLY A 78 N ARG A 41 SHEET 5 A13 SER A 46 GLY A 51 1 N LEU A 47 O ILE A 81 SHEET 6 A13 THR A 135 GLY A 143 1 O LEU A 139 N THR A 50 SHEET 7 A13 THR A 200 GLY A 207 1 O PHE A 206 N PHE A 142 SHEET 8 A13 SER A 151 SER A 154 -1 N SER A 151 O GLU A 205 SHEET 9 A13 VAL A 177 TRP A 181 1 O LEU A 179 N ILE A 152 SHEET 10 A13 GLN A 249 THR A 253 1 O LEU A 251 N LEU A 180 SHEET 11 A13 GLU A 321 PRO A 328 -1 O ARG A 327 N GLU A 252 SHEET 12 A13 SER A 305 ARG A 311 -1 N ALA A 309 O ILE A 324 SHEET 13 A13 GLN A 258 LYS A 260 0 SHEET 1 B 4 TRP A 146 CYS A 148 0 SHEET 2 B 4 SER A 305 ARG A 311 -1 O ILE A 310 N ASP A 147 SHEET 3 B 4 GLU A 321 PRO A 328 -1 O ILE A 324 N ALA A 309 SHEET 4 B 4 GLU A 276 VAL A 277 0 SHEET 1 C 4 ILE A 297 ARG A 300 0 SHEET 2 C 4 VAL A 282 HIS A 287 -1 N LEU A 286 O ILE A 297 SHEET 3 C 4 GLY A 265 PRO A 269 -1 N ILE A 266 O HIS A 287 SHEET 4 C 4 MSE A 314 VAL A 316 -1 O MSE A 314 N PHE A 267 SHEET 1 D13 HIS B 6 LEU B 7 0 SHEET 2 D13 GLY B 15 VAL B 23 -1 O VAL B 22 N HIS B 6 SHEET 3 D13 LEU B 32 ARG B 41 -1 O ASN B 40 N GLY B 15 SHEET 4 D13 GLY B 78 VAL B 83 -1 O GLY B 78 N ARG B 41 SHEET 5 D13 SER B 46 GLY B 51 1 N ILE B 49 O ILE B 81 SHEET 6 D13 THR B 135 SER B 141 1 O LEU B 139 N THR B 50 SHEET 7 D13 THR B 200 PHE B 206 1 O PHE B 206 N HIS B 140 SHEET 8 D13 SER B 151 SER B 154 -1 N ILE B 153 O CYS B 203 SHEET 9 D13 VAL B 177 TRP B 181 1 O LEU B 179 N ILE B 152 SHEET 10 D13 GLN B 249 THR B 253 1 O GLN B 249 N THR B 178 SHEET 11 D13 GLU B 321 PRO B 328 -1 O ARG B 327 N GLU B 252 SHEET 12 D13 SER B 305 ARG B 311 -1 N THR B 306 O ALA B 326 SHEET 13 D13 GLN B 258 LYS B 260 0 SHEET 1 E 4 TRP B 146 CYS B 148 0 SHEET 2 E 4 SER B 305 ARG B 311 -1 O ILE B 310 N ASP B 147 SHEET 3 E 4 GLU B 321 PRO B 328 -1 O ALA B 326 N THR B 306 SHEET 4 E 4 GLU B 276 VAL B 277 0 SHEET 1 F 4 ILE B 297 ARG B 300 0 SHEET 2 F 4 VAL B 282 HIS B 287 -1 N LEU B 286 O ILE B 297 SHEET 3 F 4 GLY B 265 PRO B 269 -1 N ILE B 266 O HIS B 287 SHEET 4 F 4 MSE B 314 VAL B 316 -1 O VAL B 316 N GLY B 265 LINK C GLN A 162 N MSE A 163 1555 1555 1.34 LINK C MSE A 163 N THR A 164 1555 1555 1.32 LINK C GLY A 188 N MSE A 189 1555 1555 1.33 LINK C MSE A 189 N PHE A 190 1555 1555 1.33 LINK C VAL A 273 N MSE A 274 1555 1555 1.33 LINK C MSE A 274 N ASP A 275 1555 1555 1.34 LINK C PRO A 288 N MSE A 289 1555 1555 1.34 LINK C MSE A 289 N GLY A 290 1555 1555 1.32 LINK CZ BARG A 311 CE BMSE A 314 1555 1555 1.72 LINK NH2BARG A 311 CE BMSE A 314 1555 1555 1.74 LINK C ALA A 313 N MSE A 314 1555 1555 1.33 LINK C MSE A 314 N TYR A 315 1555 1555 1.33 LINK C MSE B 1 N SER B 2 1555 1555 1.33 LINK C GLN B 162 N MSE B 163 1555 1555 1.34 LINK C MSE B 163 N THR B 164 1555 1555 1.34 LINK C MSE B 189 N PHE B 190 1555 1555 1.33 LINK C VAL B 273 N MSE B 274 1555 1555 1.33 LINK C MSE B 274 N ASP B 275 1555 1555 1.34 LINK C PRO B 288 N MSE B 289 1555 1555 1.34 LINK C MSE B 289 N GLY B 290 1555 1555 1.32 LINK C ALA B 313 N MSE B 314 1555 1555 1.34 LINK C MSE B 314 N TYR B 315 1555 1555 1.33 CISPEP 1 PHE A 109 PRO A 110 0 3.60 CRYST1 81.054 86.140 94.632 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012338 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010567 0.00000 MASTER 439 0 11 15 42 0 0 6 0 0 0 52 END