HEADER RNA 29-JUN-07 2QH4 TITLE SOLUTION STRUCTURE OF THE U85 C/D-H/ACA SCARNA 5' TERMINAL TITLE 2 HAIRPIN LOOP COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN U85 C/D-H/ACA SCARNA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: U85 5' TERMINAL HAIRPIN LOOP; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: RNA IS SYNTHESIZED USING IN VITRO SOURCE 4 TRANSCRIPTION WITH T7 RNA POLYMERASE AND A PARTIALLY SOURCE 5 DOUBLE-STRANDED DNA TEMPLATE KEYWDS LOOP, SHEARED GA PAIR, RNA EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.FEIGON,C.A.THEIMER,N.CHIM,K.E.BREECE REVDAT 3 24-FEB-09 2QH4 1 VERSN REVDAT 2 30-OCT-07 2QH4 1 JRNL REVDAT 1 25-SEP-07 2QH4 0 JRNL AUTH C.A.THEIMER,B.E.JADY,N.CHIM,P.RICHARD,K.E.BREECE, JRNL AUTH 2 T.KISS,J.FEIGON JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF JRNL TITL 2 HUMAN TELOMERASE RNA PROCESSING AND CAJAL BODY JRNL TITL 3 LOCALIZATION SIGNALS. JRNL REF MOL.CELL V. 27 869 2007 JRNL REFN ISSN 1097-2765 JRNL PMID 17889661 JRNL DOI 10.1016/J.MOLCEL.2007.07.017 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : NIH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES ARE BASED ON 404 NOE- REMARK 3 DERIVED DISTANCE CONTRAINTS, 70 DIHEDRAL ANGLE RESTRAINTS, AND REMARK 3 18 DISTANCE RESTRAINTS FROM HYDROGEN BONDS REMARK 4 REMARK 4 2QH4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-07. REMARK 100 THE RCSB ID CODE IS RCSB043591. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 293 REMARK 210 PH : 6.3; 6.3 REMARK 210 IONIC STRENGTH : 100 MM KCL; 100 MM KCL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM UNLABELED RNA, 10 MM REMARK 210 SODIUM PHOSPHATE BUFFER, PH REMARK 210 6.3, 100 MM KCL, 50 UM EDTA, REMARK 210 0.2% SODIUM AZIDE; 95% H2O, 5% REMARK 210 D2O OR 100% D2O; 1 MM 13C, 15N REMARK 210 LABELED RNA, 10 MM SODIUM REMARK 210 PHOSPHATE BUFFER, PH 6.3, 100 REMARK 210 MM KCL, 50 UM EDTA, 0.2% REMARK 210 SODIUM AZIDE; 95% H2O, 5% D2O REMARK 210 OR 100% D2O; 1 MM 13C, 15N G- REMARK 210 ONLY LABELED RNA, 10 MM SODIUM REMARK 210 PHOSPHATE BUFFER, PH 6.3, 100 REMARK 210 MM KCL, 50 UM EDTA, 0.2% REMARK 210 SODIUM AZIDE; 95% H2O, 5% D2O REMARK 210 OR 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY (11ECHO AND REMARK 210 WATERGATE), 2D NOESY, 2D REMARK 210 TOCSY, NATURAL ABUNDANCE 2D REMARK 210 13C HSQC, 2D 15N-HMQC, 2D 15N- REMARK 210 CPMG-NOESY, 2D JNN-HNN-COSY, REMARK 210 2D 13C-HSQC, 2D HCCH-COCSY, 3D REMARK 210 HCCH-TOCSY, 3D NOESY-HMQC, 2D REMARK 210 31P SPIN ECHO DIFFERENCE HCCH/ REMARK 210 HSQC/HMQC, 2D CT-CE-HSQC, 2D REMARK 210 13C-HSQC, 2D FILTERED-EDITED REMARK 210 NOESYS REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX, AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, AURELIA 3.108, X REMARK 210 -PLOR 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY, NO RESTRAINT REMARK 210 VIOLATION, CONSISTENT WITH REMARK 210 RESIDUAL DIPOLAR COUPLINGS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 A A 6 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 7 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 7 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 8 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 G A 14 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 14 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 16 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 16 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 A A 6 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 G A 7 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 7 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 A A 8 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 14 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 14 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 16 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 16 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 2 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 2 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 A A 4 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 A A 6 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 G A 7 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 7 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 3 A A 8 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 G A 9 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 9 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 3 A A 12 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 3 G A 14 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 14 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 3 G A 16 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 3 G A 16 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 4 G A 1 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 4 G A 1 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 320 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2QH4 A 1 18 PDB 2QH4 2QH4 1 18 SEQRES 1 A 18 G G C A C A G A G U U A U SEQRES 2 A 18 G U G C C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 145 0 0 0 0 0 0 6 0 0 0 2 END