HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-JUN-07 2QGY TITLE CRYSTAL STRUCTURE OF AN ENOLASE FROM THE ENVIRONMENTAL GENOME SHOTGUN TITLE 2 SEQUENCING OF THE SARGASSO SEA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOLASE FROM THE ENVIRONMENTAL GENOME SHOTGUN SEQUENCING OF COMPND 3 THE SARGASSO SEA; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_COMMON: ENVIRONMENTAL SAMPLE; SOURCE 3 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 4 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 5 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS STRUCTURAL GENOMICS, UNKNOWN FUNCTION, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 NYSGXRC EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,M.GILMORE,K.T.BAIN,C.LAU,R.ROMERO,D.SMITH,S.WASSERMAN, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 5 03-FEB-21 2QGY 1 AUTHOR JRNL REMARK LINK REVDAT 4 14-NOV-18 2QGY 1 AUTHOR REVDAT 3 18-OCT-17 2QGY 1 REMARK REVDAT 2 24-FEB-09 2QGY 1 VERSN REVDAT 1 24-JUL-07 2QGY 0 JRNL AUTH J.B.BONANNO,M.GILMORE,K.T.BAIN,C.LAU,R.ROMERO,D.SMITH, JRNL AUTH 2 S.WASSERMAN,J.M.SAUDER,S.K.BURLEY,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF AN ENOLASE FROM THE ENVIRONMENTAL JRNL TITL 2 GENOME SHOTGUN SEQUENCING OF THE SARGASSO SEA. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 69372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3506 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4812 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 243 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5954 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 562 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.56000 REMARK 3 B22 (A**2) : -0.31000 REMARK 3 B33 (A**2) : -1.25000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.131 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.084 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.654 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6154 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8340 ; 1.415 ; 1.965 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 773 ; 5.607 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 267 ;38.094 ;25.655 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1147 ;13.897 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;15.936 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 942 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4550 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3017 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4318 ; 0.314 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 485 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 3 ; 0.125 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.181 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.149 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.160 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3904 ; 0.944 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6163 ; 1.534 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2581 ; 2.551 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2166 ; 3.935 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2QGY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-07. REMARK 100 THE DEPOSITION ID IS D_1000043585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69393 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 74.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : 0.10400 REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.63400 REMARK 200 R SYM FOR SHELL (I) : 0.63400 REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MES PH 6.2, 25% PEG 3350, 200 REMARK 280 MM MAGNESIUM CHLORIDE, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.57650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.57650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.31800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.58400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.31800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.58400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.57650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.31800 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 69.58400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.57650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.31800 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 69.58400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). THE DIMERIC ASSEMBLY SHOWN REMARK 300 IN REMARK 350 IS PREDICTED BY THE ANALYSIS OF PROTEIN REMARK 300 INTERFACES BASED ON THIS CRYSTAL STRUCTURE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG B 703 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 897 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 745 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 865 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 921 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 988 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -1 REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 ASN A 2 REMARK 465 SER A 379 REMARK 465 ASN A 380 REMARK 465 ASP A 381 REMARK 465 GLU A 382 REMARK 465 GLY A 383 REMARK 465 HIS A 384 REMARK 465 HIS A 385 REMARK 465 HIS A 386 REMARK 465 HIS A 387 REMARK 465 HIS A 388 REMARK 465 HIS A 389 REMARK 465 MET B -1 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 ASN B 2 REMARK 465 ASN B 3 REMARK 465 SER B 379 REMARK 465 ASN B 380 REMARK 465 ASP B 381 REMARK 465 GLU B 382 REMARK 465 GLY B 383 REMARK 465 HIS B 384 REMARK 465 HIS B 385 REMARK 465 HIS B 386 REMARK 465 HIS B 387 REMARK 465 HIS B 388 REMARK 465 HIS B 389 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 986 O HOH B 991 2.00 REMARK 500 O HOH A 821 O HOH A 827 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 56 -0.94 72.98 REMARK 500 ARG A 95 -132.12 -111.31 REMARK 500 SER A 129 72.78 85.88 REMARK 500 LEU A 172 -160.47 -110.53 REMARK 500 VAL A 201 70.77 57.16 REMARK 500 ASN A 243 50.36 -100.98 REMARK 500 SER A 306 -96.31 -102.84 REMARK 500 ASP A 347 -116.26 51.29 REMARK 500 PHE B 56 -0.85 79.58 REMARK 500 LEU B 172 -156.67 -111.18 REMARK 500 VAL B 201 70.35 56.71 REMARK 500 CYS B 301 64.67 -150.02 REMARK 500 SER B 306 -98.13 -103.55 REMARK 500 ASP B 347 -114.41 52.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 198 OD2 REMARK 620 2 GLU A 224 OE2 86.5 REMARK 620 3 GLU A 250 OE1 169.0 84.3 REMARK 620 4 HOH A 956 O 93.6 169.0 96.5 REMARK 620 5 HOH A 968 O 87.7 108.5 89.5 82.4 REMARK 620 6 HOH A 971 O 82.2 88.1 103.6 81.0 160.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 702 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 198 OD2 REMARK 620 2 GLU B 224 OE2 85.1 REMARK 620 3 GLU B 250 OE1 171.5 89.3 REMARK 620 4 HOH B 758 O 81.9 90.2 104.5 REMARK 620 5 HOH B 981 O 97.6 167.5 89.3 78.2 REMARK 620 6 HOH B 994 O 87.7 108.9 88.2 157.4 83.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 703 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 265 OD1 REMARK 620 2 ASN B 265 OD1 90.8 REMARK 620 3 HOH B 745 O 136.3 132.9 REMARK 620 4 HOH B 745 O 136.4 132.9 0.1 REMARK 620 5 HOH B 765 O 96.7 79.8 91.9 91.8 REMARK 620 6 HOH B 765 O 81.4 96.0 92.4 92.5 175.4 REMARK 620 7 HOH B 801 O 160.1 69.3 63.6 63.5 81.9 98.5 REMARK 620 8 HOH B 801 O 71.4 162.1 64.9 64.9 99.8 83.7 128.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 703 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-9384A RELATED DB: TARGETDB DBREF 2QGY A -1 389 PDB 2QGY 2QGY -1 389 DBREF 2QGY B -1 389 PDB 2QGY 2QGY -1 389 SEQRES 1 A 391 MET SER LEU ASN ASN GLN ASP ILE SER ILE GLY LYS LEU SEQRES 2 A 391 SER ARG LEU LYS ILE TRP ILE THR ASP ASN HIS LEU SER SEQRES 3 A 391 ASP ASP GLN TRP SER ASN THR LYS LYS PHE ILE ILE ILE SEQRES 4 A 391 LYS ILE THR THR GLU ASP GLY ILE GLU GLY TRP GLY GLU SEQRES 5 A 391 ALA PHE SER ILE ASN PHE ARG GLU LYS GLY ILE ALA ILE SEQRES 6 A 391 ILE ILE LYS GLU LEU PHE ARG GLU ILE SER ASN ILE PRO SEQRES 7 A 391 ASN LEU SER ILE LYS SER PHE TYR ASN LYS ILE SER LEU SEQRES 8 A 391 LEU SER ASP GLY HIS ARG GLY LEU ASP PHE SER SER ALA SEQRES 9 A 391 THR SER ALA ILE GLU ILE ALA LEU TRP ASP ILE SER GLY SEQRES 10 A 391 LYS LEU LYS ASN LEU PRO LEU ASN SER LEU LEU THR LYS SEQRES 11 A 391 SER PRO LYS PRO ASN VAL PRO ILE TYR ALA THR CYS TRP SEQRES 12 A 391 SER ASP LEU LYS LYS ASP THR ASN ASP TYR LEU ARG GLN SEQRES 13 A 391 ILE GLU LYS PHE TYR GLY LYS LYS TYR GLY GLY ILE LYS SEQRES 14 A 391 ILE TYR PRO MET LEU ASP SER LEU SER ILE SER ILE GLN SEQRES 15 A 391 PHE VAL GLU LYS VAL ARG GLU ILE VAL GLY ASP GLU LEU SEQRES 16 A 391 PRO LEU MET LEU ASP LEU ALA VAL PRO GLU ASP LEU ASP SEQRES 17 A 391 GLN THR LYS SER PHE LEU LYS GLU VAL SER SER PHE ASN SEQRES 18 A 391 PRO TYR TRP ILE GLU GLU PRO VAL ASP GLY GLU ASN ILE SEQRES 19 A 391 SER LEU LEU THR GLU ILE LYS ASN THR PHE ASN MET LYS SEQRES 20 A 391 VAL VAL THR GLY GLU LYS GLN SER GLY LEU VAL HIS PHE SEQRES 21 A 391 ARG GLU LEU ILE SER ARG ASN ALA ALA ASP ILE PHE ASN SEQRES 22 A 391 PRO ASP ILE SER GLY MET GLY GLY LEU ILE ASP ILE ILE SEQRES 23 A 391 GLU ILE SER ASN GLU ALA SER ASN ASN GLY ILE PHE ILE SEQRES 24 A 391 SER PRO HIS CYS TRP ASN SER MET SER VAL SER ALA SER SEQRES 25 A 391 ALA MET LEU HIS VAL CYS SER SER ILE PRO ASN SER GLU SEQRES 26 A 391 LYS ALA GLU ILE PHE PRO ASP TYR ILE ASN PHE SER LYS SEQRES 27 A 391 LYS PHE CYS GLU LEU PRO PHE ASP ILE ILE ASP ASN LYS SEQRES 28 A 391 ALA HIS ILE ASN LYS SER ALA GLY LEU GLY ILE VAL ILE SEQRES 29 A 391 HIS GLU ASP ILE LEU SER GLU LEU SER ILE TYR SER LEU SEQRES 30 A 391 ASP GLU LYS SER ASN ASP GLU GLY HIS HIS HIS HIS HIS SEQRES 31 A 391 HIS SEQRES 1 B 391 MET SER LEU ASN ASN GLN ASP ILE SER ILE GLY LYS LEU SEQRES 2 B 391 SER ARG LEU LYS ILE TRP ILE THR ASP ASN HIS LEU SER SEQRES 3 B 391 ASP ASP GLN TRP SER ASN THR LYS LYS PHE ILE ILE ILE SEQRES 4 B 391 LYS ILE THR THR GLU ASP GLY ILE GLU GLY TRP GLY GLU SEQRES 5 B 391 ALA PHE SER ILE ASN PHE ARG GLU LYS GLY ILE ALA ILE SEQRES 6 B 391 ILE ILE LYS GLU LEU PHE ARG GLU ILE SER ASN ILE PRO SEQRES 7 B 391 ASN LEU SER ILE LYS SER PHE TYR ASN LYS ILE SER LEU SEQRES 8 B 391 LEU SER ASP GLY HIS ARG GLY LEU ASP PHE SER SER ALA SEQRES 9 B 391 THR SER ALA ILE GLU ILE ALA LEU TRP ASP ILE SER GLY SEQRES 10 B 391 LYS LEU LYS ASN LEU PRO LEU ASN SER LEU LEU THR LYS SEQRES 11 B 391 SER PRO LYS PRO ASN VAL PRO ILE TYR ALA THR CYS TRP SEQRES 12 B 391 SER ASP LEU LYS LYS ASP THR ASN ASP TYR LEU ARG GLN SEQRES 13 B 391 ILE GLU LYS PHE TYR GLY LYS LYS TYR GLY GLY ILE LYS SEQRES 14 B 391 ILE TYR PRO MET LEU ASP SER LEU SER ILE SER ILE GLN SEQRES 15 B 391 PHE VAL GLU LYS VAL ARG GLU ILE VAL GLY ASP GLU LEU SEQRES 16 B 391 PRO LEU MET LEU ASP LEU ALA VAL PRO GLU ASP LEU ASP SEQRES 17 B 391 GLN THR LYS SER PHE LEU LYS GLU VAL SER SER PHE ASN SEQRES 18 B 391 PRO TYR TRP ILE GLU GLU PRO VAL ASP GLY GLU ASN ILE SEQRES 19 B 391 SER LEU LEU THR GLU ILE LYS ASN THR PHE ASN MET LYS SEQRES 20 B 391 VAL VAL THR GLY GLU LYS GLN SER GLY LEU VAL HIS PHE SEQRES 21 B 391 ARG GLU LEU ILE SER ARG ASN ALA ALA ASP ILE PHE ASN SEQRES 22 B 391 PRO ASP ILE SER GLY MET GLY GLY LEU ILE ASP ILE ILE SEQRES 23 B 391 GLU ILE SER ASN GLU ALA SER ASN ASN GLY ILE PHE ILE SEQRES 24 B 391 SER PRO HIS CYS TRP ASN SER MET SER VAL SER ALA SER SEQRES 25 B 391 ALA MET LEU HIS VAL CYS SER SER ILE PRO ASN SER GLU SEQRES 26 B 391 LYS ALA GLU ILE PHE PRO ASP TYR ILE ASN PHE SER LYS SEQRES 27 B 391 LYS PHE CYS GLU LEU PRO PHE ASP ILE ILE ASP ASN LYS SEQRES 28 B 391 ALA HIS ILE ASN LYS SER ALA GLY LEU GLY ILE VAL ILE SEQRES 29 B 391 HIS GLU ASP ILE LEU SER GLU LEU SER ILE TYR SER LEU SEQRES 30 B 391 ASP GLU LYS SER ASN ASP GLU GLY HIS HIS HIS HIS HIS SEQRES 31 B 391 HIS HET MG A 701 1 HET MG B 702 1 HET MG B 703 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 3(MG 2+) FORMUL 6 HOH *562(H2 O) HELIX 1 1 SER A 24 TRP A 28 5 5 HELIX 2 2 ARG A 57 SER A 73 1 17 HELIX 3 3 SER A 79 ASP A 92 1 14 HELIX 4 4 GLY A 96 ASN A 119 1 24 HELIX 5 5 PRO A 121 THR A 127 1 7 HELIX 6 6 ASP A 147 LYS A 161 1 15 HELIX 7 7 SER A 174 GLY A 190 1 17 HELIX 8 8 ASP A 204 SER A 216 1 13 HELIX 9 9 SER A 217 ASN A 219 5 3 HELIX 10 10 ASN A 231 PHE A 242 1 12 HELIX 11 11 GLY A 254 ARG A 264 1 11 HELIX 12 12 GLY A 279 ASN A 293 1 15 HELIX 13 13 SER A 306 ILE A 319 1 14 HELIX 14 14 PHE A 328 ASP A 330 5 3 HELIX 15 15 TYR A 331 LYS A 337 1 7 HELIX 16 16 HIS A 363 LEU A 370 1 8 HELIX 17 17 ARG B 57 SER B 73 1 17 HELIX 18 18 SER B 79 ASP B 92 1 14 HELIX 19 19 GLY B 96 ASN B 119 1 24 HELIX 20 20 PRO B 121 THR B 127 1 7 HELIX 21 21 ASP B 147 LYS B 161 1 15 HELIX 22 22 SER B 174 GLY B 190 1 17 HELIX 23 23 ASP B 204 SER B 216 1 13 HELIX 24 24 SER B 217 ASN B 219 5 3 HELIX 25 25 ASN B 231 PHE B 242 1 12 HELIX 26 26 GLY B 254 ARG B 264 1 11 HELIX 27 27 GLY B 279 ASN B 292 1 14 HELIX 28 28 SER B 306 ILE B 319 1 14 HELIX 29 29 PHE B 328 ASP B 330 5 3 HELIX 30 30 TYR B 331 CYS B 339 1 9 HELIX 31 31 HIS B 363 LEU B 370 1 8 SHEET 1 A 4 GLU A 46 ALA A 51 0 SHEET 2 A 4 ILE A 35 THR A 41 -1 N ILE A 39 O GLY A 47 SHEET 3 A 4 LEU A 11 THR A 19 -1 N SER A 12 O THR A 40 SHEET 4 A 4 SER A 371 GLU A 377 -1 O GLU A 377 N LEU A 14 SHEET 1 B 8 PHE A 296 ILE A 297 0 SHEET 2 B 8 ILE A 269 PHE A 270 1 N PHE A 270 O PHE A 296 SHEET 3 B 8 VAL A 246 THR A 248 1 O VAL A 246 N ILE A 269 SHEET 4 B 8 TRP A 222 GLU A 224 1 N ILE A 223 O VAL A 247 SHEET 5 B 8 LEU A 195 ASP A 198 1 N LEU A 197 O GLU A 224 SHEET 6 B 8 ILE A 166 ILE A 168 1 N ILE A 168 O ASP A 198 SHEET 7 B 8 ASN A 133 THR A 139 1 N ALA A 138 O LYS A 167 SHEET 8 B 8 ALA A 325 ILE A 327 1 O ALA A 325 N PRO A 135 SHEET 1 C 9 PHE A 296 ILE A 297 0 SHEET 2 C 9 ILE A 269 PHE A 270 1 N PHE A 270 O PHE A 296 SHEET 3 C 9 VAL A 246 THR A 248 1 O VAL A 246 N ILE A 269 SHEET 4 C 9 TRP A 222 GLU A 224 1 N ILE A 223 O VAL A 247 SHEET 5 C 9 LEU A 195 ASP A 198 1 N LEU A 197 O GLU A 224 SHEET 6 C 9 ILE A 166 ILE A 168 1 N ILE A 168 O ASP A 198 SHEET 7 C 9 ASN A 133 THR A 139 1 N ALA A 138 O LYS A 167 SHEET 8 C 9 LYS A 349 ILE A 352 -1 O ALA A 350 N VAL A 134 SHEET 9 C 9 PHE A 343 ILE A 346 -1 N ASP A 344 O HIS A 351 SHEET 1 D 4 GLU B 46 ALA B 51 0 SHEET 2 D 4 ILE B 35 THR B 41 -1 N ILE B 39 O GLY B 47 SHEET 3 D 4 LEU B 11 THR B 19 -1 N SER B 12 O THR B 40 SHEET 4 D 4 SER B 371 GLU B 377 -1 O ILE B 372 N ILE B 18 SHEET 1 E 8 PHE B 296 ILE B 297 0 SHEET 2 E 8 ILE B 269 PHE B 270 1 N PHE B 270 O PHE B 296 SHEET 3 E 8 VAL B 246 THR B 248 1 O VAL B 246 N ILE B 269 SHEET 4 E 8 TRP B 222 GLU B 224 1 N ILE B 223 O VAL B 247 SHEET 5 E 8 LEU B 195 ASP B 198 1 N LEU B 197 O GLU B 224 SHEET 6 E 8 ILE B 166 ILE B 168 1 N ILE B 168 O ASP B 198 SHEET 7 E 8 ASN B 133 THR B 139 1 N ALA B 138 O LYS B 167 SHEET 8 E 8 ALA B 325 ILE B 327 1 O ILE B 327 N THR B 139 SHEET 1 F 9 PHE B 296 ILE B 297 0 SHEET 2 F 9 ILE B 269 PHE B 270 1 N PHE B 270 O PHE B 296 SHEET 3 F 9 VAL B 246 THR B 248 1 O VAL B 246 N ILE B 269 SHEET 4 F 9 TRP B 222 GLU B 224 1 N ILE B 223 O VAL B 247 SHEET 5 F 9 LEU B 195 ASP B 198 1 N LEU B 197 O GLU B 224 SHEET 6 F 9 ILE B 166 ILE B 168 1 N ILE B 168 O ASP B 198 SHEET 7 F 9 ASN B 133 THR B 139 1 N ALA B 138 O LYS B 167 SHEET 8 F 9 LYS B 349 ILE B 352 -1 O ALA B 350 N VAL B 134 SHEET 9 F 9 PHE B 343 ILE B 346 -1 N ILE B 346 O LYS B 349 LINK OD2 ASP A 198 MG MG A 701 1555 1555 2.00 LINK OE2 GLU A 224 MG MG A 701 1555 1555 2.03 LINK OE1 GLU A 250 MG MG A 701 1555 1555 1.95 LINK MG MG A 701 O HOH A 956 1555 1555 2.01 LINK MG MG A 701 O HOH A 968 1555 1555 2.06 LINK MG MG A 701 O HOH A 971 1555 1555 2.14 LINK OD2 ASP B 198 MG MG B 702 1555 1555 1.99 LINK OE2 GLU B 224 MG MG B 702 1555 1555 2.10 LINK OE1 GLU B 250 MG MG B 702 1555 1555 1.95 LINK OD1 ASN B 265 MG MG B 703 1555 1555 1.78 LINK OD1 ASN B 265 MG MG B 703 3655 1555 1.83 LINK MG MG B 702 O HOH B 758 1555 1555 2.13 LINK MG MG B 702 O HOH B 981 1555 1555 2.05 LINK MG MG B 702 O HOH B 994 1555 1555 2.09 LINK MG MG B 703 O HOH B 745 1555 1555 2.06 LINK MG MG B 703 O HOH B 745 1555 3655 2.06 LINK MG MG B 703 O HOH B 765 1555 1555 2.22 LINK MG MG B 703 O HOH B 765 1555 3655 2.20 LINK MG MG B 703 O HOH B 801 1555 1555 3.12 LINK MG MG B 703 O HOH B 801 1555 3655 3.06 SITE 1 AC1 6 ASP A 198 GLU A 224 GLU A 250 HOH A 956 SITE 2 AC1 6 HOH A 968 HOH A 971 SITE 1 AC2 6 ASP B 198 GLU B 224 GLU B 250 HOH B 758 SITE 2 AC2 6 HOH B 981 HOH B 994 SITE 1 AC3 4 ASN B 265 HOH B 745 HOH B 765 HOH B 801 CRYST1 88.636 139.168 121.153 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011282 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007186 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008254 0.00000 MASTER 403 0 3 31 42 0 5 6 0 0 0 62 END