HEADER HYDROLASE ACTIVATOR 28-JUN-07 2QFZ TITLE CRYSTAL STRUCTURE OF HUMAN TBC1 DOMAIN FAMILY MEMBER 22A COMPND MOL_ID: 1; COMPND 2 MOLECULE: TBC1 DOMAIN FAMILY MEMBER 22A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RAB-GAP TBC DOMAIN: RESIDUES 191-517; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TBC1D22A, C22ORF4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS(DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A-MHL KEYWDS RAB-GAP, GTPASE ACTIVATOR, TBC1, STRUCTURAL GENOMICS, STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM, SGC, HYDROLASE ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR Y.TONG,W.TEMPEL,S.DIMOV,A.DONG,R.LANDRY,C.H.ARROWSMITH,A.M.EDWARDS, AUTHOR 2 M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 3 18-OCT-17 2QFZ 1 REMARK REVDAT 2 24-FEB-09 2QFZ 1 VERSN REVDAT 1 10-JUL-07 2QFZ 0 JRNL AUTH Y.TONG,W.TEMPEL,S.DIMOV,A.DONG,R.LANDRY,C.H.ARROWSMITH, JRNL AUTH 2 A.M.EDWARDS,M.SUNDSTROM,J.WEIGELT,A.BOCHKAREV,H.PARK JRNL TITL CRYSTAL STRUCTURE OF HUMAN TBC1 DOMAIN FAMILY MEMBER 22A. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 39184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : THIN SHELLS REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.229 REMARK 3 FREE R VALUE TEST SET COUNT : 2049 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2683 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2440 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : 0.2960 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4872 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.59700 REMARK 3 B22 (A**2) : -0.92400 REMARK 3 B33 (A**2) : 0.19300 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.05600 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.234 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.202 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.236 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.945 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5041 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3441 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6861 ; 1.395 ; 1.947 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8324 ; 0.993 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 603 ; 5.574 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 237 ;37.673 ;22.827 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 833 ;14.573 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;18.829 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 755 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5539 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1103 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1068 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3261 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2453 ; 0.181 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2353 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 101 ; 0.149 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.155 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 31 ; 0.140 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3133 ; 2.742 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1187 ; 0.770 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4889 ; 3.883 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2251 ; 2.776 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1967 ; 3.786 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. ARP/WARP, MOLPROBITY, COOT PROGRAMS HAVE ALSO BEEN REMARK 3 USED IN REFINEMENT. REMARK 4 REMARK 4 2QFZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-07. REMARK 100 THE DEPOSITION ID IS D_1000043550. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-07 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39313 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.96600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2G77 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 28.0% PEG400, 0.2M CALCIUM CHLORIDE, REMARK 280 0.1M SODIUM HEPES, PH 7.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 60.75750 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT THE REMARK 300 BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 HIS A 177 REMARK 465 HIS A 178 REMARK 465 HIS A 179 REMARK 465 SER A 180 REMARK 465 SER A 181 REMARK 465 GLY A 182 REMARK 465 ARG A 183 REMARK 465 GLU A 184 REMARK 465 ASN A 185 REMARK 465 LEU A 186 REMARK 465 TYR A 187 REMARK 465 PHE A 188 REMARK 465 GLN A 189 REMARK 465 GLY A 190 REMARK 465 SER A 191 REMARK 465 GLU A 192 REMARK 465 ARG A 193 REMARK 465 GLU A 194 REMARK 465 ALA A 195 REMARK 465 TYR A 265 REMARK 465 ASP A 266 REMARK 465 SER A 267 REMARK 465 ARG A 268 REMARK 465 ASN A 269 REMARK 465 ASP A 270 REMARK 465 GLU A 271 REMARK 465 VAL A 272 REMARK 465 ALA A 340 REMARK 465 GLU A 341 REMARK 465 GLU A 342 REMARK 465 VAL A 343 REMARK 465 ASP A 344 REMARK 465 ALA A 509 REMARK 465 ASP A 510 REMARK 465 ALA A 511 REMARK 465 PRO A 512 REMARK 465 ASN A 513 REMARK 465 HIS A 514 REMARK 465 TYR A 515 REMARK 465 LYS A 516 REMARK 465 LYS A 517 REMARK 465 MET B 173 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 465 HIS B 177 REMARK 465 HIS B 178 REMARK 465 HIS B 179 REMARK 465 SER B 180 REMARK 465 SER B 181 REMARK 465 GLY B 182 REMARK 465 ARG B 183 REMARK 465 GLU B 184 REMARK 465 ASN B 185 REMARK 465 LEU B 186 REMARK 465 TYR B 187 REMARK 465 PHE B 188 REMARK 465 GLN B 189 REMARK 465 GLY B 190 REMARK 465 SER B 191 REMARK 465 GLU B 192 REMARK 465 ARG B 193 REMARK 465 GLU B 194 REMARK 465 ALA B 195 REMARK 465 ASP B 266 REMARK 465 SER B 267 REMARK 465 ARG B 268 REMARK 465 ASN B 269 REMARK 465 ASP B 270 REMARK 465 GLU B 271 REMARK 465 VAL B 272 REMARK 465 ALA B 340 REMARK 465 GLU B 341 REMARK 465 GLU B 342 REMARK 465 VAL B 343 REMARK 465 ASP B 344 REMARK 465 THR B 345 REMARK 465 PHE B 508 REMARK 465 ALA B 509 REMARK 465 ASP B 510 REMARK 465 ALA B 511 REMARK 465 PRO B 512 REMARK 465 ASN B 513 REMARK 465 HIS B 514 REMARK 465 TYR B 515 REMARK 465 LYS B 516 REMARK 465 LYS B 517 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 199 CG OD1 OD2 REMARK 470 LYS A 202 CE NZ REMARK 470 GLU A 213 CD OE1 OE2 REMARK 470 ARG A 217 CD NE CZ NH1 NH2 REMARK 470 GLU A 256 CD OE1 OE2 REMARK 470 GLU A 290 CG CD OE1 OE2 REMARK 470 LYS A 297 CD CE NZ REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 THR A 345 OG1 CG2 REMARK 470 ARG A 398 NE CZ NH1 NH2 REMARK 470 GLU A 401 CG CD OE1 OE2 REMARK 470 LYS A 466 CD CE NZ REMARK 470 GLU A 470 CG CD OE1 OE2 REMARK 470 ASP A 491 CG OD1 OD2 REMARK 470 GLU A 492 CG CD OE1 OE2 REMARK 470 LEU A 496 CD1 CD2 REMARK 470 PHE A 508 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 200 CE NZ REMARK 470 ASN B 209 CG OD1 ND2 REMARK 470 GLU B 213 CD OE1 OE2 REMARK 470 GLU B 214 CD OE1 OE2 REMARK 470 ARG B 217 CD NE CZ NH1 NH2 REMARK 470 ASP B 244 CG OD1 OD2 REMARK 470 ARG B 245 NE CZ NH1 NH2 REMARK 470 LYS B 255 CE NZ REMARK 470 GLN B 274 CG CD OE1 NE2 REMARK 470 GLU B 290 CG CD OE1 OE2 REMARK 470 LEU B 294 CG CD1 CD2 REMARK 470 LYS B 297 CD CE NZ REMARK 470 GLU B 300 CD OE1 OE2 REMARK 470 GLU B 339 CG CD OE1 OE2 REMARK 470 ASP B 376 OD1 OD2 REMARK 470 GLN B 386 CG CD OE1 NE2 REMARK 470 ARG B 398 NE CZ NH1 NH2 REMARK 470 GLU B 401 CG CD OE1 OE2 REMARK 470 GLU B 411 CD OE1 OE2 REMARK 470 HIS B 451 CG ND1 CD2 CE1 NE2 REMARK 470 LEU B 454 CG CD1 CD2 REMARK 470 LYS B 466 CD CE NZ REMARK 470 GLU B 471 CD OE1 OE2 REMARK 470 LYS B 472 CE NZ REMARK 470 ASP B 473 CG OD1 OD2 REMARK 470 PHE B 474 CD1 CD2 CE1 CE2 CZ REMARK 470 GLN B 475 CD OE1 NE2 REMARK 470 LEU B 496 CD1 CD2 REMARK 470 GLU B 500 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN B 320 UNK UNX B 1011 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 286 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 400 76.66 -156.49 REMARK 500 ASN A 483 53.50 -143.87 REMARK 500 HIS B 263 -72.96 -65.80 REMARK 500 ASN B 483 56.56 -150.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX B 1011 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 1012 DBREF 2QFZ A 191 517 UNP Q8WUA7 TB22A_HUMAN 191 517 DBREF 2QFZ B 191 517 UNP Q8WUA7 TB22A_HUMAN 191 517 SEQADV 2QFZ MET A 173 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS A 174 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS A 175 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS A 176 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS A 177 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS A 178 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS A 179 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ SER A 180 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ SER A 181 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ GLY A 182 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ ARG A 183 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ GLU A 184 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ ASN A 185 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ LEU A 186 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ TYR A 187 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ PHE A 188 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ GLN A 189 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ GLY A 190 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ MET B 173 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS B 174 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS B 175 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS B 176 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS B 177 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS B 178 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ HIS B 179 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ SER B 180 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ SER B 181 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ GLY B 182 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ ARG B 183 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ GLU B 184 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ ASN B 185 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ LEU B 186 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ TYR B 187 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ PHE B 188 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ GLN B 189 UNP Q8WUA7 CLONING ARTIFACT SEQADV 2QFZ GLY B 190 UNP Q8WUA7 CLONING ARTIFACT SEQRES 1 A 345 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 A 345 LEU TYR PHE GLN GLY SER GLU ARG GLU ALA SER ARG LEU SEQRES 3 A 345 ASP LYS PHE LYS GLN LEU LEU ALA GLY PRO ASN THR ASP SEQRES 4 A 345 LEU GLU GLU LEU ARG ARG LEU SER TRP SER GLY ILE PRO SEQRES 5 A 345 LYS PRO VAL ARG PRO MET THR TRP LYS LEU LEU SER GLY SEQRES 6 A 345 TYR LEU PRO ALA ASN VAL ASP ARG ARG PRO ALA THR LEU SEQRES 7 A 345 GLN ARG LYS GLN LYS GLU TYR PHE ALA PHE ILE GLU HIS SEQRES 8 A 345 TYR TYR ASP SER ARG ASN ASP GLU VAL HIS GLN ASP THR SEQRES 9 A 345 TYR ARG GLN ILE HIS ILE ASP ILE PRO ARG MET SER PRO SEQRES 10 A 345 GLU ALA LEU ILE LEU GLN PRO LYS VAL THR GLU ILE PHE SEQRES 11 A 345 GLU ARG ILE LEU PHE ILE TRP ALA ILE ARG HIS PRO ALA SEQRES 12 A 345 SER GLY TYR VAL GLN GLY ILE ASN ASP LEU VAL THR PRO SEQRES 13 A 345 PHE PHE VAL VAL PHE ILE CYS GLU TYR ILE GLU ALA GLU SEQRES 14 A 345 GLU VAL ASP THR VAL ASP VAL SER GLY VAL PRO ALA GLU SEQRES 15 A 345 VAL LEU CYS ASN ILE GLU ALA ASP THR TYR TRP CYS MET SEQRES 16 A 345 SER LYS LEU LEU ASP GLY ILE GLN ASP ASN TYR THR PHE SEQRES 17 A 345 ALA GLN PRO GLY ILE GLN MET LYS VAL LYS MET LEU GLU SEQRES 18 A 345 GLU LEU VAL SER ARG ILE ASP GLU GLN VAL HIS ARG HIS SEQRES 19 A 345 LEU ASP GLN HIS GLU VAL ARG TYR LEU GLN PHE ALA PHE SEQRES 20 A 345 ARG TRP MET ASN ASN LEU LEU MET ARG GLU VAL PRO LEU SEQRES 21 A 345 ARG CYS THR ILE ARG LEU TRP ASP THR TYR GLN SER GLU SEQRES 22 A 345 PRO ASP GLY PHE SER HIS PHE HIS LEU TYR VAL CYS ALA SEQRES 23 A 345 ALA PHE LEU VAL ARG TRP ARG LYS GLU ILE LEU GLU GLU SEQRES 24 A 345 LYS ASP PHE GLN GLU LEU LEU LEU PHE LEU GLN ASN LEU SEQRES 25 A 345 PRO THR ALA HIS TRP ASP ASP GLU ASP ILE SER LEU LEU SEQRES 26 A 345 LEU ALA GLU ALA TYR ARG LEU LYS PHE ALA PHE ALA ASP SEQRES 27 A 345 ALA PRO ASN HIS TYR LYS LYS SEQRES 1 B 345 MET HIS HIS HIS HIS HIS HIS SER SER GLY ARG GLU ASN SEQRES 2 B 345 LEU TYR PHE GLN GLY SER GLU ARG GLU ALA SER ARG LEU SEQRES 3 B 345 ASP LYS PHE LYS GLN LEU LEU ALA GLY PRO ASN THR ASP SEQRES 4 B 345 LEU GLU GLU LEU ARG ARG LEU SER TRP SER GLY ILE PRO SEQRES 5 B 345 LYS PRO VAL ARG PRO MET THR TRP LYS LEU LEU SER GLY SEQRES 6 B 345 TYR LEU PRO ALA ASN VAL ASP ARG ARG PRO ALA THR LEU SEQRES 7 B 345 GLN ARG LYS GLN LYS GLU TYR PHE ALA PHE ILE GLU HIS SEQRES 8 B 345 TYR TYR ASP SER ARG ASN ASP GLU VAL HIS GLN ASP THR SEQRES 9 B 345 TYR ARG GLN ILE HIS ILE ASP ILE PRO ARG MET SER PRO SEQRES 10 B 345 GLU ALA LEU ILE LEU GLN PRO LYS VAL THR GLU ILE PHE SEQRES 11 B 345 GLU ARG ILE LEU PHE ILE TRP ALA ILE ARG HIS PRO ALA SEQRES 12 B 345 SER GLY TYR VAL GLN GLY ILE ASN ASP LEU VAL THR PRO SEQRES 13 B 345 PHE PHE VAL VAL PHE ILE CYS GLU TYR ILE GLU ALA GLU SEQRES 14 B 345 GLU VAL ASP THR VAL ASP VAL SER GLY VAL PRO ALA GLU SEQRES 15 B 345 VAL LEU CYS ASN ILE GLU ALA ASP THR TYR TRP CYS MET SEQRES 16 B 345 SER LYS LEU LEU ASP GLY ILE GLN ASP ASN TYR THR PHE SEQRES 17 B 345 ALA GLN PRO GLY ILE GLN MET LYS VAL LYS MET LEU GLU SEQRES 18 B 345 GLU LEU VAL SER ARG ILE ASP GLU GLN VAL HIS ARG HIS SEQRES 19 B 345 LEU ASP GLN HIS GLU VAL ARG TYR LEU GLN PHE ALA PHE SEQRES 20 B 345 ARG TRP MET ASN ASN LEU LEU MET ARG GLU VAL PRO LEU SEQRES 21 B 345 ARG CYS THR ILE ARG LEU TRP ASP THR TYR GLN SER GLU SEQRES 22 B 345 PRO ASP GLY PHE SER HIS PHE HIS LEU TYR VAL CYS ALA SEQRES 23 B 345 ALA PHE LEU VAL ARG TRP ARG LYS GLU ILE LEU GLU GLU SEQRES 24 B 345 LYS ASP PHE GLN GLU LEU LEU LEU PHE LEU GLN ASN LEU SEQRES 25 B 345 PRO THR ALA HIS TRP ASP ASP GLU ASP ILE SER LEU LEU SEQRES 26 B 345 LEU ALA GLU ALA TYR ARG LEU LYS PHE ALA PHE ALA ASP SEQRES 27 B 345 ALA PRO ASN HIS TYR LYS LYS HET UNX A1001 1 HET UNX A1004 1 HET UNX A1006 1 HET UNX A1007 1 HET UNX A1008 1 HET UNX A1009 1 HET UNX A1012 1 HET UNX B1002 1 HET UNX B1003 1 HET UNX B1005 1 HET UNX B1010 1 HET UNX B1011 1 HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 UNX 12(X) FORMUL 15 HOH *80(H2 O) HELIX 1 1 SER A 196 GLY A 207 1 12 HELIX 2 2 ASP A 211 TRP A 220 1 10 HELIX 3 3 PRO A 224 PRO A 226 5 3 HELIX 4 4 VAL A 227 SER A 236 1 10 HELIX 5 5 ASN A 242 ASP A 244 5 3 HELIX 6 6 ARG A 245 TYR A 264 1 20 HELIX 7 7 HIS A 273 ILE A 284 1 12 HELIX 8 8 PRO A 285 MET A 287 5 3 HELIX 9 9 PRO A 289 LEU A 294 1 6 HELIX 10 10 GLN A 295 HIS A 313 1 19 HELIX 11 11 GLY A 321 CYS A 335 1 15 HELIX 12 12 GLU A 336 ILE A 338 5 3 HELIX 13 13 PRO A 352 GLY A 373 1 22 HELIX 14 14 ILE A 374 TYR A 378 5 5 HELIX 15 15 GLN A 382 ASP A 400 1 19 HELIX 16 16 ASP A 400 HIS A 410 1 11 HELIX 17 17 ARG A 413 ASN A 424 1 12 HELIX 18 18 PRO A 431 GLN A 443 1 13 HELIX 19 19 HIS A 451 TRP A 464 1 14 HELIX 20 20 TRP A 464 GLU A 471 1 8 HELIX 21 21 ASP A 473 GLN A 482 1 10 HELIX 22 22 ASP A 490 PHE A 508 1 19 HELIX 23 23 SER B 196 ALA B 206 1 11 HELIX 24 24 ASP B 211 TRP B 220 1 10 HELIX 25 25 PRO B 224 PRO B 226 5 3 HELIX 26 26 VAL B 227 SER B 236 1 10 HELIX 27 27 ASN B 242 ASP B 244 5 3 HELIX 28 28 ARG B 245 TYR B 265 1 21 HELIX 29 29 HIS B 273 ILE B 284 1 12 HELIX 30 30 PRO B 285 MET B 287 5 3 HELIX 31 31 PRO B 289 LEU B 294 1 6 HELIX 32 32 GLN B 295 HIS B 313 1 19 HELIX 33 33 GLY B 321 GLU B 336 1 16 HELIX 34 34 PRO B 352 ILE B 374 1 23 HELIX 35 35 GLN B 375 TYR B 378 5 4 HELIX 36 36 GLN B 382 ASP B 400 1 19 HELIX 37 37 ASP B 400 HIS B 410 1 11 HELIX 38 38 ARG B 413 ASN B 424 1 12 HELIX 39 39 PRO B 431 GLU B 445 1 15 HELIX 40 40 HIS B 451 TRP B 464 1 14 HELIX 41 41 TRP B 464 GLU B 471 1 8 HELIX 42 42 ASP B 473 GLN B 482 1 10 HELIX 43 43 ASP B 490 ALA B 507 1 18 CISPEP 1 GLY A 207 PRO A 208 0 9.33 CISPEP 2 SER A 288 PRO A 289 0 -5.11 CISPEP 3 GLY B 207 PRO B 208 0 13.68 CISPEP 4 SER B 288 PRO B 289 0 1.70 SITE 1 AC1 3 GLN A 375 GLU A 471 GLU A 476 SITE 1 AC2 6 ARG B 420 ASN B 424 LEU B 426 MET B 427 SITE 2 AC2 6 ARG B 428 GLU B 429 SITE 1 AC3 4 GLN B 416 PHE B 417 PHE B 419 ARG B 420 SITE 1 AC4 7 ARG A 420 TRP A 421 ASN A 424 LEU A 426 SITE 2 AC4 7 MET A 427 ARG A 428 GLU A 429 SITE 1 AC5 4 PHE B 449 SER B 450 HOH B2028 HOH B2046 SITE 1 AC6 3 PHE A 417 ARG A 420 TRP A 421 SITE 1 AC7 3 PHE A 449 SER A 450 HOH A2041 SITE 1 AC8 3 ASP A 493 LEU A 496 LEU A 497 SITE 1 AC9 2 ARG A 217 SER A 221 SITE 1 BC1 1 ARG B 433 SITE 1 BC2 6 ASP A 408 HOH A2066 ASP B 283 GLN B 320 SITE 2 BC2 6 HOH B2052 HOH B2069 SITE 1 BC3 3 ASP A 283 GLN A 320 ASP B 408 CRYST1 42.911 121.515 66.278 90.00 93.64 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023300 0.000000 0.001480 0.00000 SCALE2 0.000000 0.008230 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015120 0.00000 MASTER 482 0 12 43 0 0 15 6 0 0 0 54 END